Wall clock time and date at job start Tue Mar 31 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00244 * 2 1 4 4 H 1.09000 * 110.63878 * 26.85383 * 3 2 1 5 5 C 1.54336 * 111.00042 * 263.78013 * 3 2 1 6 6 N 1.47021 * 107.26378 * 219.59922 * 5 3 2 7 7 C 1.36930 * 125.64701 * 178.85098 * 6 5 3 8 8 H 1.08001 * 120.00119 * 189.75453 * 7 6 5 9 9 C 1.38810 * 119.99961 * 9.75277 * 7 6 5 10 10 N 1.31631 * 119.99846 * 195.14253 * 9 7 6 11 11 Si 1.86798 * 120.00326 * 15.13878 * 9 7 6 12 12 H 1.48505 * 109.47267 * 174.49184 * 11 9 7 13 13 H 1.48507 * 109.46844 * 54.49250 * 11 9 7 14 14 H 1.48496 * 109.47237 * 294.49670 * 11 9 7 15 15 C 1.47425 * 108.70462 * 358.58474 * 6 5 3 16 16 C 1.54912 * 104.83156 * 24.35748 * 15 6 5 17 17 H 1.08997 * 111.00807 * 81.06150 * 16 15 6 18 18 N 1.46501 * 111.00340 * 204.87978 * 16 15 6 19 19 C 1.34771 * 119.99686 * 273.54097 * 18 16 15 20 20 O 1.21607 * 120.00378 * 0.02562 * 19 18 16 21 21 C 1.47449 * 120.00005 * 180.02562 * 19 18 16 22 22 C 1.37978 * 124.15670 * 180.02562 * 21 19 18 23 23 S 1.72104 * 104.03605 * 179.97438 * 22 21 19 24 24 N 1.56410 * 96.15080 * 0.02562 * 23 22 21 25 25 N 1.27415 * 109.87808 * 359.74741 * 24 23 22 26 26 H 1.09000 * 109.47149 * 59.99836 * 1 2 3 27 27 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47126 * 300.00482 * 1 2 3 29 29 H 1.09008 * 109.99015 * 100.12321 * 5 3 2 30 30 H 1.08998 * 109.77984 * 338.95447 * 5 3 2 31 31 H 0.96996 * 119.99667 * 2.97181 * 10 9 7 32 32 H 1.08997 * 110.36537 * 143.19228 * 15 6 5 33 33 H 1.08997 * 110.36694 * 265.52137 * 15 6 5 34 34 H 0.97001 * 119.99960 * 93.55138 * 18 16 15 35 35 H 1.08000 * 127.98683 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9803 -2.4155 8 1 5.3619 3.3380 -2.2816 9 6 3.7475 3.0581 -3.6628 10 7 4.4777 3.2811 -4.7351 11 14 1.8982 2.8464 -3.8197 12 1 1.4877 3.1041 -5.2234 13 1 1.2118 3.8070 -2.9189 14 1 1.5249 1.4598 -3.4413 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9171 0.3654 0.5365 18 7 3.2172 1.5207 2.1639 19 6 4.2052 1.1830 3.0160 20 8 5.2335 0.6921 2.5911 21 6 4.0395 1.4088 4.4637 22 6 4.9933 1.0966 5.4106 23 16 4.2723 1.5682 6.9005 24 7 2.9309 2.0826 6.2821 25 7 2.9556 1.9422 5.0160 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6128 2.4181 -1.8233 30 1 2.4707 0.8724 -2.0758 31 1 5.4424 3.3480 -4.6595 32 1 5.1786 2.3788 0.1248 33 1 3.7841 3.4306 0.5171 34 1 2.3971 1.9125 2.5029 35 1 5.9678 0.6584 5.2532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081992216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:21 Heat of formation + Delta-G solvation = 10.574156 kcal Electronic energy + Delta-G solvation = -21950.153140 eV Core-core repulsion = 18497.641701 eV Total energy + Delta-G solvation = -3452.511439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21346 -40.97655 -39.72522 -37.72872 -35.86720 -34.17413 -33.22280 -30.87132 -29.74226 -28.11563 -27.51213 -26.06892 -24.48404 -22.84439 -22.14501 -21.83800 -20.54548 -19.67573 -18.26394 -18.06199 -17.49869 -17.14141 -16.82736 -16.27892 -16.22203 -15.91567 -15.66394 -15.48104 -15.11686 -15.01724 -14.46618 -13.85216 -13.68307 -13.60275 -13.37251 -13.07109 -13.05719 -12.45535 -12.35130 -11.81391 -11.64576 -11.56586 -11.30565 -11.21404 -11.19502 -10.98040 -10.91427 -10.63493 -10.25834 -9.19801 -8.70500 -5.54175 -0.95683 -0.07741 0.26615 0.51874 1.37501 1.47739 1.67587 1.81317 1.93329 2.51852 2.54189 2.66257 3.06706 3.25436 3.41993 3.60784 3.64959 3.79091 3.86891 4.15958 4.23934 4.34786 4.43596 4.55681 4.62107 4.72319 4.76119 4.84045 4.87535 5.17762 5.46242 6.02180 6.12021 6.13669 6.49268 6.74368 6.89045 7.33828 7.97862 8.82502 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.003879 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.437920 B = 7217.429335 C = 7905.826083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.390 6.390 3 C 0.090 3.910 4 H 0.110 0.890 5 C 0.087 3.913 6 N -0.625 5.625 7 C -0.317 4.317 8 H 0.047 0.953 9 C -0.076 4.076 10 N -0.960 5.960 11 Si 1.106 2.894 12 H -0.308 1.308 13 H -0.274 1.274 14 H -0.252 1.252 15 C 0.130 3.870 16 C 0.150 3.850 17 H 0.091 0.909 18 N -0.686 5.686 19 C 0.605 3.395 20 O -0.555 6.555 21 C -0.043 4.043 22 C -0.238 4.238 23 S 0.573 5.427 24 N -0.329 5.329 25 N -0.231 5.231 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.248 0.752 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.420 0.580 35 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 -6.090 27.230 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.309 6.309 3 C 0.030 3.970 4 H 0.128 0.872 5 C -0.038 4.038 6 N -0.354 5.354 7 C -0.446 4.446 8 H 0.065 0.935 9 C -0.269 4.269 10 N -0.604 5.604 11 Si 0.933 3.067 12 H -0.237 1.237 13 H -0.201 1.201 14 H -0.177 1.177 15 C 0.003 3.997 16 C 0.044 3.956 17 H 0.109 0.891 18 N -0.337 5.337 19 C 0.388 3.612 20 O -0.432 6.432 21 C -0.190 4.190 22 C -0.394 4.394 23 S 0.708 5.292 24 N -0.310 5.310 25 N -0.101 5.101 26 H 0.064 0.936 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.258 0.742 35 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.164 -5.916 27.170 28.980 hybrid contribution 2.215 0.212 -0.804 2.366 sum -5.949 -5.704 26.367 27.625 Atomic orbital electron populations 1.23145 0.78790 1.04537 1.01365 1.87933 1.22189 1.25964 1.94772 1.23163 0.94000 0.86268 0.93533 0.87238 1.22554 0.88077 0.95580 0.97595 1.44594 1.22030 1.66030 1.02796 1.20066 0.96751 1.38621 0.89122 0.93460 1.27208 1.10535 0.98812 0.90383 1.71011 1.06362 1.53490 1.29488 0.83466 0.70961 0.78475 0.73825 1.23735 1.20125 1.17725 1.21939 0.97715 0.95942 0.84067 1.21956 0.95973 0.98868 0.78830 0.89075 1.45515 1.19807 1.62799 1.05561 1.16948 0.83134 0.77564 0.83540 1.90856 1.28924 1.45422 1.77962 1.22346 0.92682 1.07088 0.96915 1.29290 1.07340 1.04332 0.98471 1.81152 1.01831 1.36682 1.09503 1.78296 1.22633 1.24527 1.05583 1.71565 1.22476 1.13866 1.02146 0.93559 0.87662 0.91660 0.94161 0.93765 0.94308 0.94408 0.93784 0.74180 0.75618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.85 113.37 1.23 1.59 16 2 O -0.39 -11.83 10.45 -148.98 -1.56 -13.39 16 3 C 0.09 2.90 3.06 31.79 0.10 2.99 16 4 H 0.11 2.82 7.68 -2.39 -0.02 2.80 16 5 C 0.09 3.71 4.40 86.73 0.38 4.09 16 6 N -0.63 -31.37 3.33 -691.97 -2.30 -33.67 16 7 C -0.32 -19.06 10.56 84.03 0.89 -18.17 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 9 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 10 N -0.96 -63.07 13.71 21.65 0.30 -62.77 16 11 Si 1.11 53.66 24.52 68.60 1.68 55.34 16 12 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 13 H -0.27 -12.15 6.82 99.48 0.68 -11.47 16 14 H -0.25 -10.90 5.41 99.48 0.54 -10.36 16 15 C 0.13 5.44 6.93 86.86 0.60 6.04 16 16 C 0.15 5.19 3.04 46.38 0.14 5.34 16 17 H 0.09 3.58 7.73 -2.39 -0.02 3.56 16 18 N -0.69 -19.13 5.23 -439.19 -2.30 -21.43 16 19 C 0.61 17.53 7.81 86.67 0.68 18.20 16 20 O -0.55 -19.73 16.54 -4.05 -0.07 -19.79 16 21 C -0.04 -0.95 6.87 41.36 0.28 -0.66 16 22 C -0.24 -3.46 11.21 67.76 0.76 -2.70 16 23 S 0.57 5.42 23.38 -56.49 -1.32 4.10 16 24 N -0.33 -6.07 12.49 37.02 0.46 -5.60 16 25 N -0.23 -5.12 11.24 -50.34 -0.57 -5.68 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.06 8.11 -2.39 -0.02 1.04 16 29 H 0.04 1.71 3.89 -2.38 -0.01 1.70 16 30 H 0.04 2.05 6.62 -2.39 -0.02 2.04 16 31 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.42 9.65 8.10 -92.71 -0.75 8.90 16 35 H 0.23 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -79.74 309.97 0.01 -79.72 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.16 Total: 10.66 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.52 Total: 12.52 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -4.41 Total: -129.16 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.62 Total: -33.18 kcal Atomic # 14 Polarization: 53.66 SS G_CDS: 1.68 Total: 55.34 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -1.32 Total: 4.10 kcal Total: -79.74 0.01 -79.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081992216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.299 kcal (2) G-P(sol) polarization free energy of solvation -79.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds