Wall clock time and date at job start Tue Mar 31 2020 03:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99945 * 2 1 4 4 H 1.48494 * 109.47328 * 272.94525 * 3 2 1 5 5 H 1.48504 * 109.46905 * 32.94845 * 3 2 1 6 6 H 1.48497 * 109.46935 * 152.94439 * 3 2 1 7 7 C 1.38813 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00080 * 339.34582 * 7 2 1 9 9 N 1.36940 * 119.99880 * 159.34393 * 7 2 1 10 10 C 1.46922 * 120.63109 * 152.60875 * 9 7 2 11 11 C 1.53191 * 108.77594 * 126.40882 * 10 9 7 12 12 C 1.53044 * 109.31257 * 54.63956 * 11 10 9 13 13 H 1.09000 * 109.46196 * 58.64747 * 12 11 10 14 14 N 1.46492 * 109.46342 * 178.61345 * 12 11 10 15 15 C 1.34778 * 119.99887 * 275.06926 * 14 12 11 16 16 O 1.21622 * 120.00210 * 359.97438 * 15 14 12 17 17 C 1.47177 * 119.99887 * 180.02562 * 15 14 12 18 18 C 1.38245 * 128.47405 * 179.70217 * 17 15 14 19 19 N 1.31238 * 111.88571 * 179.81081 * 18 17 15 20 20 N 1.27333 * 120.04273 * 0.52738 * 19 18 17 21 21 S 1.56639 * 109.73954 * 359.69752 * 20 19 18 22 22 C 1.53049 * 109.53531 * 298.63302 * 12 11 10 23 23 H 1.09000 * 109.49463 * 301.41134 * 22 12 11 24 24 O 1.42896 * 109.49765 * 181.31387 * 22 12 11 25 25 C 1.46932 * 120.62969 * 332.62837 * 9 7 2 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.59027 * 246.19740 * 10 9 7 28 28 H 1.09001 * 109.58368 * 6.62809 * 10 9 7 29 29 H 1.08998 * 109.50651 * 294.68827 * 11 10 9 30 30 H 1.09004 * 109.50140 * 174.58614 * 11 10 9 31 31 H 0.97003 * 120.00329 * 95.06219 * 14 12 11 32 32 H 1.08003 * 124.05458 * 359.97015 * 18 17 15 33 33 H 0.96698 * 114.00247 * 179.97438 * 24 22 12 34 34 H 1.08999 * 109.58342 * 113.80371 * 25 9 7 35 35 H 1.08994 * 109.70567 * 353.44960 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4354 2.0825 -1.3981 5 1 1.4801 2.6339 0.7615 6 1 3.5775 1.4230 0.6368 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3308 9 7 3.3136 -1.2404 -0.4178 10 6 4.2351 -2.2628 0.0962 11 6 4.8752 -2.9908 -1.0900 12 6 5.5290 -1.9659 -2.0198 13 1 6.2781 -1.3995 -1.4666 14 7 6.1707 -2.6610 -3.1383 15 6 7.4212 -3.1453 -3.0024 16 8 8.0169 -3.0048 -1.9514 17 6 8.0662 -3.8432 -4.1262 18 6 9.3308 -4.3989 -4.1817 19 7 9.5732 -4.9476 -5.3490 20 7 8.6899 -4.9130 -6.2655 21 16 7.4139 -4.1701 -5.7426 22 6 4.4621 -1.0098 -2.5585 23 1 3.6995 -1.5783 -3.0908 24 8 5.0684 -0.0723 -3.4503 25 6 3.8173 -0.2594 -1.3889 26 1 -0.4850 0.8401 0.0004 27 1 5.0116 -1.7871 0.6951 28 1 3.6841 -2.9766 0.7086 29 1 4.1088 -3.5406 -1.6363 30 1 5.6318 -3.6856 -0.7253 31 1 5.6958 -2.7729 -3.9766 32 1 10.0338 -4.3854 -3.3620 33 1 4.4493 0.5658 -3.8307 34 1 4.5597 0.3797 -0.9110 35 1 2.9923 0.3507 -1.7565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090116330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:23 Heat of formation + Delta-G solvation = 20.071113 kcal Electronic energy + Delta-G solvation = -21991.113178 eV Core-core repulsion = 18539.013558 eV Total energy + Delta-G solvation = -3452.099620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12941 -40.00388 -38.26362 -35.63308 -34.74282 -32.68850 -32.09778 -30.35180 -29.35584 -27.78732 -25.33192 -23.47071 -22.89425 -21.68662 -20.79573 -19.92928 -19.46078 -17.82799 -17.06658 -16.84065 -16.48167 -16.17166 -15.50902 -14.94924 -14.82977 -14.44930 -14.36271 -13.97055 -13.49073 -13.02682 -12.97443 -12.60447 -12.53994 -12.29467 -12.23889 -11.51504 -11.13814 -11.03475 -10.63566 -10.60931 -10.49956 -10.40364 -10.36052 -10.15971 -9.91096 -9.75815 -9.61641 -9.12761 -8.77066 -7.17200 -6.08961 -3.46960 -0.58014 0.48509 1.15513 1.67274 2.77674 2.81149 3.17714 3.39490 3.42026 3.70653 4.16431 4.38241 4.39002 4.51530 4.79162 5.03805 5.16995 5.26659 5.29776 5.48507 5.62967 5.66705 5.81463 6.06935 6.12781 6.27124 6.39132 6.40539 6.48858 6.69830 7.19337 7.33202 7.68013 7.83757 7.89260 8.18614 8.77077 9.55851 9.90885 11.06464 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.032892 B = 0.003704 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.058204 B = 7556.981610 C = 7737.066870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.089 0.911 9 N -0.601 5.601 10 C 0.148 3.852 11 C -0.143 4.143 12 C 0.162 3.838 13 H 0.095 0.905 14 N -0.704 5.704 15 C 0.599 3.401 16 O -0.517 6.517 17 C -0.278 4.278 18 C 0.070 3.930 19 N -0.252 5.252 20 N -0.260 5.260 21 S 0.422 5.578 22 C 0.079 3.921 23 H 0.066 0.934 24 O -0.572 6.572 25 C 0.102 3.898 26 H 0.264 0.736 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.216 0.784 33 H 0.379 0.621 34 H 0.037 0.963 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.677 -6.206 -10.609 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.711 3.289 4 H -0.217 1.217 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.393 4.393 8 H 0.107 0.893 9 N -0.326 5.326 10 C 0.022 3.978 11 C -0.183 4.183 12 C 0.058 3.942 13 H 0.113 0.887 14 N -0.353 5.353 15 C 0.382 3.618 16 O -0.393 6.393 17 C -0.420 4.420 18 C -0.096 4.096 19 N -0.116 5.116 20 N -0.241 5.241 21 S 0.557 5.443 22 C 0.018 3.982 23 H 0.083 0.917 24 O -0.377 6.377 25 C -0.025 4.025 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.233 0.767 33 H 0.227 0.773 34 H 0.055 0.945 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.181 -6.928 -11.516 18.824 hybrid contribution 0.134 1.605 0.790 1.794 sum 13.315 -5.323 -10.726 17.907 Atomic orbital electron populations 1.69830 1.05725 1.26747 1.52291 1.25304 0.95247 0.97600 0.99275 0.87001 0.80210 0.84643 0.77040 1.21710 1.22865 1.19407 1.18934 0.84697 0.94997 1.40717 0.89299 1.44336 1.08886 1.33357 1.46046 1.20968 0.92511 0.91407 0.92932 1.22463 0.99892 0.97871 0.98095 1.21113 0.94425 0.92151 0.86478 0.88702 1.45971 1.14629 1.57246 1.17501 1.16471 0.81556 0.78573 0.85237 1.90860 1.63755 1.57535 1.27173 1.28184 1.00527 1.11475 1.01775 1.24481 0.95121 0.94107 0.95925 1.70696 1.23414 1.18555 0.98982 1.78870 1.01970 1.18946 1.24308 1.82666 1.23260 1.38177 1.00207 1.22810 0.93397 0.90244 0.91775 0.91656 1.86426 1.40001 1.47644 1.63598 1.22031 0.97856 0.92787 0.89844 0.92582 0.95191 0.90936 0.91263 0.91121 0.76777 0.76729 0.77344 0.94468 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.97 55.49 0.78 -25.55 16 2 C 0.03 0.69 5.23 -17.43 -0.09 0.60 16 3 Si 0.88 21.10 24.35 -169.99 -4.14 16.96 16 4 H -0.29 -6.52 6.62 56.52 0.37 -6.14 16 5 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.27 -6.43 6.64 56.52 0.38 -6.06 16 7 C -0.27 -6.93 10.04 -15.06 -0.15 -7.08 16 8 H 0.09 2.48 8.05 -52.49 -0.42 2.06 16 9 N -0.60 -13.14 2.77 -172.32 -0.48 -13.61 16 10 C 0.15 2.70 6.52 -3.71 -0.02 2.68 16 11 C -0.14 -2.18 5.65 -26.61 -0.15 -2.33 16 12 C 0.16 2.44 2.12 -67.89 -0.14 2.29 16 13 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 14 N -0.70 -8.72 4.91 -54.92 -0.27 -8.99 16 15 C 0.60 7.77 7.77 -12.63 -0.10 7.67 16 16 O -0.52 -8.33 16.64 5.26 0.09 -8.24 16 17 C -0.28 -2.92 6.81 -35.95 -0.25 -3.16 16 18 C 0.07 0.71 11.55 -17.80 -0.21 0.50 16 19 N -0.25 -2.87 11.54 30.36 0.35 -2.52 16 20 N -0.26 -2.85 12.51 60.35 0.75 -2.10 16 21 S 0.42 3.57 23.05 -107.50 -2.48 1.09 16 22 C 0.08 1.24 3.14 -26.61 -0.08 1.16 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 O -0.57 -8.04 13.16 -35.23 -0.46 -8.50 16 25 C 0.10 2.01 3.83 -3.71 -0.01 2.00 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.40 4.00 8.03 -40.82 -0.33 3.67 16 32 H 0.22 1.71 8.06 -52.48 -0.42 1.28 16 33 H 0.38 4.09 9.08 45.56 0.41 4.50 16 34 H 0.04 0.76 7.08 -51.93 -0.37 0.40 16 35 H 0.08 1.70 4.50 -51.93 -0.23 1.46 16 LS Contribution 307.10 15.07 4.63 4.63 Total: -1.00 -31.86 307.10 -5.48 -37.34 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -3.05 Total: 5.16 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.21 Total: 4.33 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 1.13 Total: -52.76 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.38 Total: -16.74 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.96 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.48 Total: 1.09 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.86 -5.48 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090116330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.411 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds