Wall clock time and date at job start Tue Mar 31 2020 03:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00263 * 2 1 4 4 H 1.48503 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46972 * 300.00117 * 3 2 1 6 6 H 1.48503 * 109.47310 * 59.99709 * 3 2 1 7 7 C 1.38810 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00219 * 197.36394 * 7 2 1 9 9 N 1.36939 * 120.00171 * 17.36919 * 7 2 1 10 10 C 1.46922 * 120.63481 * 207.69343 * 9 7 2 11 11 C 1.53170 * 108.76657 * 233.58787 * 10 9 7 12 12 C 1.53032 * 109.32666 * 305.34672 * 11 10 9 13 13 H 1.08999 * 109.46138 * 181.38503 * 12 11 10 14 14 N 1.46500 * 109.46690 * 301.36382 * 12 11 10 15 15 C 1.34774 * 119.99872 * 275.03081 * 14 12 11 16 16 O 1.21620 * 120.00144 * 359.71535 * 15 14 12 17 17 C 1.47176 * 119.99933 * 179.97438 * 15 14 12 18 18 C 1.38242 * 128.47623 * 179.70095 * 17 15 14 19 19 N 1.31233 * 111.88958 * 179.80780 * 18 17 15 20 20 N 1.27334 * 120.03831 * 0.53140 * 19 18 17 21 21 S 1.56639 * 109.74035 * 359.69409 * 20 19 18 22 22 C 1.53049 * 109.52573 * 61.37545 * 12 11 10 23 23 H 1.09007 * 109.49385 * 58.58914 * 22 12 11 24 24 O 1.42899 * 109.49749 * 178.68936 * 22 12 11 25 25 C 1.46927 * 120.62922 * 27.66561 * 9 7 2 26 26 H 0.96997 * 119.99860 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58468 * 353.36558 * 10 9 7 28 28 H 1.08994 * 109.59079 * 113.79628 * 10 9 7 29 29 H 1.08999 * 109.47483 * 185.40466 * 11 10 9 30 30 H 1.08998 * 109.50384 * 65.31453 * 11 10 9 31 31 H 0.97007 * 119.99942 * 95.01887 * 14 12 11 32 32 H 1.08001 * 124.05266 * 359.96169 * 18 17 15 33 33 H 0.96704 * 113.99873 * 180.02562 * 24 22 12 34 34 H 1.08996 * 109.58802 * 6.63210 * 25 9 7 35 35 H 1.09002 * 109.70910 * 246.27558 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2797 9 7 1.3724 -2.3612 -0.3530 10 6 1.8191 -3.6547 0.1819 11 6 2.0741 -4.6100 -0.9879 12 6 0.8185 -4.6904 -1.8591 13 1 0.9892 -5.3886 -2.6785 14 7 -0.3094 -5.1557 -1.0483 15 6 -0.5082 -6.4761 -0.8650 16 8 0.2458 -7.2814 -1.3770 17 6 -1.6410 -6.9435 -0.0499 18 6 -2.0096 -8.2427 0.2458 19 7 -3.0769 -8.2869 1.0082 20 7 -3.6445 -7.2072 1.3734 21 16 -2.8709 -5.9781 0.7866 22 6 0.5007 -3.3053 -2.4274 23 1 1.3494 -2.9479 -3.0106 24 8 -0.6540 -3.3871 -3.2653 25 6 0.2279 -2.3349 -1.2739 26 1 -0.4850 0.8400 -0.0004 27 1 2.7398 -3.5173 0.7488 28 1 1.0467 -4.0685 0.8300 29 1 2.3132 -5.6010 -0.6022 30 1 2.9079 -4.2403 -1.5846 31 1 -0.9131 -4.5135 -0.6432 32 1 -1.4811 -9.1163 -0.1063 33 1 -0.9135 -2.5436 -3.6608 34 1 0.0987 -1.3267 -1.6675 35 1 -0.6758 -2.6396 -0.7460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090116333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:27 Heat of formation + Delta-G solvation = -6.829585 kcal Electronic energy + Delta-G solvation = -22380.294938 eV Core-core repulsion = 18927.028816 eV Total energy + Delta-G solvation = -3453.266122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94822 -41.17038 -39.32305 -36.83478 -35.75610 -33.91259 -33.11417 -31.39308 -30.50533 -28.62421 -27.15173 -24.63159 -23.79626 -23.39537 -21.88138 -20.62221 -20.11996 -19.00893 -18.45822 -18.05227 -17.13966 -16.98570 -16.74381 -16.15873 -15.93707 -15.71812 -15.43232 -15.32395 -14.96679 -14.42156 -13.89206 -13.82561 -13.55475 -13.25614 -13.01532 -12.85370 -12.67453 -12.66448 -12.13428 -11.98132 -11.81094 -11.49958 -11.29567 -11.20260 -11.16274 -10.94680 -10.91055 -10.57218 -10.16987 -8.68913 -7.88156 -5.32795 -1.37614 -0.25444 0.39710 0.87076 1.48134 1.53235 1.61109 1.85613 1.88231 2.51796 2.94433 3.14386 3.29104 3.58162 3.64716 3.67970 3.94593 4.14896 4.28339 4.38541 4.47690 4.57795 4.70355 4.86851 4.97109 5.09449 5.18205 5.30540 5.42122 5.61801 5.69133 6.26117 6.37451 6.53261 6.84164 6.91343 7.15066 7.82663 8.33319 9.17566 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.004536 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.792872 B = 6171.009402 C = 6669.273536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.040 4.040 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.601 5.601 10 C 0.143 3.857 11 C -0.133 4.133 12 C 0.167 3.833 13 H 0.087 0.913 14 N -0.694 5.694 15 C 0.605 3.395 16 O -0.550 6.550 17 C -0.299 4.299 18 C 0.081 3.919 19 N -0.272 5.272 20 N -0.282 5.282 21 S 0.479 5.521 22 C 0.083 3.917 23 H 0.068 0.932 24 O -0.574 6.574 25 C 0.153 3.847 26 H 0.251 0.749 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.405 0.595 32 H 0.237 0.763 33 H 0.393 0.607 34 H 0.067 0.933 35 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 -9.668 -2.810 10.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.224 1.224 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.326 5.326 10 C 0.018 3.982 11 C -0.173 4.173 12 C 0.063 3.937 13 H 0.105 0.895 14 N -0.345 5.345 15 C 0.389 3.611 16 O -0.429 6.429 17 C -0.440 4.440 18 C -0.087 4.087 19 N -0.135 5.135 20 N -0.264 5.264 21 S 0.614 5.386 22 C 0.022 3.978 23 H 0.086 0.914 24 O -0.381 6.381 25 C 0.027 3.973 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.241 0.759 32 H 0.253 0.747 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -3.789 -10.085 -1.933 10.946 hybrid contribution 1.006 1.260 -0.506 1.690 sum -2.783 -8.825 -2.439 9.569 Atomic orbital electron populations 1.70127 1.06267 1.25873 1.55042 1.25631 0.95963 1.00945 1.01083 0.85337 0.78715 0.80450 0.76666 1.19462 1.21649 1.22360 1.19495 0.93074 0.85771 1.40908 0.91528 1.44164 1.35827 1.02133 1.50491 1.21013 0.97783 0.85586 0.93868 1.22285 0.96637 1.00169 0.98243 1.20892 0.85570 0.94406 0.92838 0.89480 1.45895 1.30817 1.05900 1.51856 1.16555 0.82430 0.82667 0.79448 1.90800 1.47160 1.54578 1.50402 1.27991 1.05946 0.98714 1.11336 1.24789 0.92060 0.98210 0.93620 1.70743 1.09800 1.19185 1.13747 1.78701 1.25266 0.99572 1.22834 1.82828 1.09360 1.17709 1.28745 1.22617 0.88491 0.94838 0.91888 0.91410 1.86384 1.47539 1.38168 1.65964 1.21254 0.88661 0.98167 0.89258 0.93954 0.92383 0.96402 0.90455 0.90079 0.75852 0.74692 0.75774 0.91517 0.96860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.20 11.19 21.65 0.24 -48.96 16 2 C -0.04 -2.03 4.91 84.86 0.42 -1.61 16 3 Si 0.96 41.41 29.59 68.60 2.03 43.44 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.30 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.26 -13.01 9.59 84.03 0.81 -12.21 16 8 H 0.07 3.27 7.89 -2.91 -0.02 3.25 16 9 N -0.60 -26.30 2.99 -699.15 -2.09 -28.40 16 10 C 0.14 5.24 6.26 86.36 0.54 5.79 16 11 C -0.13 -4.10 5.77 30.66 0.18 -3.92 16 12 C 0.17 5.15 2.47 45.02 0.11 5.27 16 13 H 0.09 2.72 7.57 -2.39 -0.02 2.70 16 14 N -0.69 -20.35 4.15 -445.93 -1.85 -22.20 16 15 C 0.60 17.38 7.77 86.59 0.67 18.06 16 16 O -0.55 -18.19 16.64 -4.09 -0.07 -18.26 16 17 C -0.30 -7.28 6.81 24.62 0.17 -7.11 16 18 C 0.08 1.80 11.55 84.78 0.98 2.77 16 19 N -0.27 -6.85 11.54 -57.87 -0.67 -7.52 16 20 N -0.28 -7.20 12.51 37.02 0.46 -6.74 16 21 S 0.48 10.63 23.05 -56.49 -1.30 9.33 16 22 C 0.08 2.68 3.36 30.68 0.10 2.78 16 23 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 24 O -0.57 -16.75 13.21 -148.98 -1.97 -18.72 16 25 C 0.15 6.18 4.64 86.36 0.40 6.58 16 26 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 27 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 28 H 0.02 0.66 7.74 -2.39 -0.02 0.65 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.40 11.86 6.30 -92.70 -0.58 11.28 16 32 H 0.24 3.94 8.06 -2.91 -0.02 3.92 16 33 H 0.39 8.94 9.08 -74.05 -0.67 8.26 16 34 H 0.07 3.09 6.04 -2.39 -0.01 3.08 16 35 H 0.01 0.56 6.65 -2.39 -0.02 0.55 16 Total: -1.00 -60.49 309.29 -0.94 -61.42 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.10 Total: 20.20 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 4.37 Total: 16.39 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -3.91 Total: -113.81 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -2.04 Total: -36.97 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 10.63 SS G_CDS: -1.30 Total: 9.33 kcal Total: -60.49 -0.94 -61.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090116333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.594 kcal (2) G-P(sol) polarization free energy of solvation -60.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds