Wall clock time and date at job start Tue Mar 31 2020 03:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47142 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47443 * 120.00202 * 3 2 1 6 6 H 1.48507 * 109.46844 * 240.00176 * 3 2 1 7 7 C 1.38811 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00567 * 162.76498 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08996 * 109.45012 * 301.22835 * 12 11 10 14 14 N 1.46499 * 109.46007 * 181.25927 * 12 11 10 15 15 C 1.34781 * 119.99985 * 84.93549 * 14 12 11 16 16 O 1.21600 * 119.99470 * 0.02562 * 15 14 12 17 17 C 1.47446 * 120.00112 * 179.97438 * 15 14 12 18 18 C 1.37976 * 124.15624 * 179.97438 * 17 15 14 19 19 S 1.72104 * 104.03489 * 179.97438 * 18 17 15 20 20 N 1.56400 * 96.15230 * 0.02562 * 19 18 17 21 21 N 1.27417 * 109.87814 * 359.72489 * 20 19 18 22 22 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 23 23 H 1.08998 * 109.52193 * 178.66778 * 22 12 11 24 24 O 1.42894 * 109.49909 * 58.58688 * 22 12 11 25 25 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 26 26 H 0.97000 * 119.99965 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 28 28 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 29 29 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 30 30 H 1.08998 * 109.38819 * 65.51098 * 11 10 9 31 31 H 0.97006 * 120.00167 * 264.93568 * 14 12 11 32 32 H 1.07998 * 127.98224 * 0.03939 * 18 17 15 33 33 H 0.96705 * 113.99942 * 180.16232 * 24 22 12 34 34 H 1.09004 * 109.58525 * 246.16048 * 25 9 7 35 35 H 1.08995 * 109.58430 * 6.43945 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1038 1.6964 -1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2233 -0.2766 9 7 1.3717 -2.3613 0.3524 10 6 0.2275 -2.3357 1.2737 11 6 0.4938 -3.3040 2.4248 12 6 0.8147 -4.6893 1.8591 13 1 -0.0220 -5.0368 1.2532 14 7 1.0409 -5.6265 2.9622 15 6 -0.0044 -6.2470 3.5443 16 8 -1.1351 -6.0293 3.1535 17 6 0.2232 -7.1907 4.6542 18 6 -0.7815 -7.8712 5.3108 19 16 0.0511 -8.8102 6.4886 20 7 1.4873 -8.3226 6.1069 21 7 1.4212 -7.4941 5.1412 22 6 2.0734 -4.6090 0.9922 23 1 2.3154 -5.6002 0.6087 24 8 3.1634 -4.1225 1.7777 25 6 1.8216 -3.6549 -0.1795 26 1 -0.4850 0.8400 0.0004 27 1 0.0986 -1.3278 1.6683 28 1 -0.6750 -2.6411 0.7442 29 1 -0.3892 -3.3664 3.0609 30 1 1.3399 -2.9453 3.0109 31 1 1.9430 -5.8004 3.2737 32 1 -1.8448 -7.8259 5.1273 33 1 3.9950 -4.0436 1.2905 34 1 1.0518 -4.0702 -0.8300 35 1 2.7427 -3.5168 -0.7455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090453570.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:54 Heat of formation + Delta-G solvation = -12.077922 kcal Electronic energy + Delta-G solvation = -22059.029946 eV Core-core repulsion = 18605.536239 eV Total energy + Delta-G solvation = -3453.493707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18068 -40.82153 -39.39343 -36.59987 -35.79495 -33.79828 -33.17306 -31.70333 -30.43067 -28.23008 -27.06640 -25.03132 -23.91844 -23.24344 -21.83286 -21.16489 -20.15396 -18.99519 -17.96946 -17.51291 -17.21584 -17.09087 -16.71937 -16.40241 -15.86802 -15.72390 -15.40783 -15.37501 -14.92398 -14.53261 -13.79630 -13.72113 -13.63149 -13.10143 -12.98719 -12.77597 -12.66472 -12.45257 -12.11639 -12.08635 -11.91064 -11.62610 -11.34135 -11.22576 -11.16858 -10.90261 -10.87911 -10.49999 -10.10815 -8.66863 -7.85745 -5.30161 -0.94410 -0.05638 0.30397 0.53567 1.47570 1.51227 1.57159 1.95536 2.03062 2.52246 2.72696 3.29078 3.37946 3.60862 3.65958 3.80415 3.88220 4.03050 4.25498 4.33822 4.37697 4.69980 4.72861 4.86786 4.92549 4.99977 5.10927 5.36375 5.46955 5.64255 5.69709 6.23420 6.38675 6.55759 6.95314 7.01003 7.15228 7.84918 8.36966 9.21065 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.033467 B = 0.003361 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.432581 B = 8330.079497 C = 8523.587178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.298 1.298 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.256 4.256 8 H 0.073 0.927 9 N -0.598 5.598 10 C 0.184 3.816 11 C -0.127 4.127 12 C 0.166 3.834 13 H 0.085 0.915 14 N -0.690 5.690 15 C 0.598 3.402 16 O -0.559 6.559 17 C -0.044 4.044 18 C -0.238 4.238 19 S 0.571 5.429 20 N -0.331 5.331 21 N -0.234 5.234 22 C 0.097 3.903 23 H 0.085 0.915 24 O -0.565 6.565 25 C 0.113 3.887 26 H 0.249 0.751 27 H 0.054 0.946 28 H -0.003 1.003 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.418 0.582 32 H 0.228 0.772 33 H 0.391 0.609 34 H 0.028 0.972 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -20.189 11.621 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.224 1.224 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.386 4.386 8 H 0.090 0.910 9 N -0.321 5.321 10 C 0.057 3.943 11 C -0.167 4.167 12 C 0.061 3.939 13 H 0.103 0.897 14 N -0.340 5.340 15 C 0.380 3.620 16 O -0.437 6.437 17 C -0.192 4.192 18 C -0.394 4.394 19 S 0.706 5.294 20 N -0.312 5.312 21 N -0.103 5.103 22 C 0.036 3.964 23 H 0.103 0.897 24 O -0.373 6.373 25 C -0.014 4.014 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.015 0.985 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.255 0.745 32 H 0.245 0.755 33 H 0.240 0.760 34 H 0.045 0.955 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.068 -20.708 12.867 24.404 hybrid contribution -0.022 2.076 -1.543 2.587 sum 1.046 -18.632 11.324 21.829 Atomic orbital electron populations 1.70184 1.06741 1.25826 1.55558 1.25794 0.95990 1.01584 1.01547 0.85347 0.77512 0.79318 0.78291 1.22394 1.20748 1.19792 1.19480 0.93014 0.85855 1.40222 0.90982 1.44087 1.35411 1.02159 1.50472 1.20381 0.88058 0.97294 0.88546 1.22154 1.00070 0.95461 0.99040 1.20897 0.97404 0.88315 0.87255 0.89655 1.45898 1.10225 1.42743 1.35099 1.17019 0.84781 0.79352 0.80809 1.90827 1.23274 1.65338 1.64245 1.22473 0.89180 1.04614 1.02899 1.29288 1.08508 1.00599 1.01026 1.81081 0.93310 1.30883 1.24158 1.78297 1.23275 1.15344 1.14321 1.71587 1.23163 1.09879 1.05690 1.22394 0.86292 0.96622 0.91060 0.89693 1.86427 1.21137 1.89144 1.40547 1.21790 0.99148 0.86432 0.94012 0.94238 0.92716 0.98473 0.93362 0.92519 0.74518 0.75497 0.76018 0.95450 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.32 11.19 21.65 0.24 -56.08 16 2 C -0.05 -3.04 4.91 84.86 0.42 -2.62 16 3 Si 0.97 45.25 29.59 68.60 2.03 47.28 16 4 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.26 -13.86 9.58 84.03 0.81 -13.05 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 9 N -0.60 -29.67 2.94 -699.93 -2.06 -31.73 16 10 C 0.18 9.30 5.28 86.22 0.46 9.76 16 11 C -0.13 -5.36 5.49 30.53 0.17 -5.19 16 12 C 0.17 5.85 2.20 45.02 0.10 5.94 16 13 H 0.09 3.20 7.58 -2.39 -0.02 3.18 16 14 N -0.69 -21.24 5.05 -445.64 -2.25 -23.48 16 15 C 0.60 18.51 7.77 86.67 0.67 19.18 16 16 O -0.56 -20.38 16.46 -4.03 -0.07 -20.44 16 17 C -0.04 -1.07 6.87 41.36 0.28 -0.79 16 18 C -0.24 -3.83 11.21 67.76 0.76 -3.07 16 19 S 0.57 6.30 23.38 -56.49 -1.32 4.98 16 20 N -0.33 -6.86 12.49 37.02 0.46 -6.40 16 21 N -0.23 -5.85 11.24 -50.35 -0.57 -6.41 16 22 C 0.10 3.07 3.38 30.67 0.10 3.18 16 23 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 24 O -0.57 -17.67 12.09 -148.98 -1.80 -19.48 16 25 C 0.11 4.33 6.16 86.36 0.53 4.87 16 26 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.05 3.15 6.04 -2.38 -0.01 3.14 16 28 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 29 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.06 2.51 7.61 -2.39 -0.02 2.49 16 31 H 0.42 11.95 7.84 -92.70 -0.73 11.22 16 32 H 0.23 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.39 9.23 9.08 -74.05 -0.67 8.55 16 34 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.08 2.72 7.93 -2.39 -0.02 2.70 16 Total: -1.00 -72.96 311.51 -1.27 -74.23 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.24 Total: 19.33 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 4.30 Total: 18.20 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -4.17 Total: -124.10 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.87 Total: -39.92 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 6.30 SS G_CDS: -1.32 Total: 4.98 kcal Total: -72.96 -1.27 -74.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090453570.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.153 kcal (2) G-P(sol) polarization free energy of solvation -72.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds