Wall clock time and date at job start Tue Mar 31 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48501 * 109.47321 * 240.00287 * 3 2 1 5 5 H 1.48499 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47092 * 119.99882 * 3 2 1 7 7 C 1.38806 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99678 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00553 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00400 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46998 * 180.02562 * 11 10 9 13 13 C 1.34769 * 120.00237 * 180.02562 * 12 11 10 14 14 O 1.21779 * 119.99998 * 359.97438 * 13 12 11 15 15 C 1.41717 * 120.00487 * 180.02562 * 13 12 11 16 16 S 1.75665 * 125.09746 * 0.02562 * 15 13 12 17 17 C 1.75556 * 91.21064 * 179.97438 * 16 15 13 18 18 C 1.34200 * 110.68287 * 359.97003 * 17 16 15 19 19 C 1.37144 * 125.10916 * 179.71898 * 15 13 12 20 20 O 1.37657 * 124.47600 * 0.27108 * 19 15 13 21 21 C 1.43385 * 114.49901 * 163.26255 * 20 19 15 22 22 C 1.53222 * 109.13124 * 46.53207 * 21 20 19 23 23 O 1.38243 * 124.15000 * 180.21373 * 18 17 16 24 24 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 25 25 H 0.97010 * 119.99690 * 0.02562 * 9 7 2 26 26 H 1.09000 * 109.47175 * 60.00228 * 10 9 7 27 27 H 1.09001 * 109.47297 * 299.99735 * 10 9 7 28 28 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 29 29 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 30 30 H 0.97010 * 119.99909 * 359.97438 * 12 11 10 31 31 H 1.07999 * 124.65961 * 179.97438 * 17 16 15 32 32 H 1.09002 * 109.52953 * 166.43357 * 21 20 19 33 33 H 1.09002 * 109.52469 * 286.56919 * 21 20 19 34 34 H 1.09005 * 109.52142 * 57.63207 * 22 21 20 35 35 H 1.09001 * 109.52160 * 177.75774 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 7 1.7963 -6.0884 -0.0006 13 6 1.1225 -7.2556 -0.0015 14 8 -0.0953 -7.2556 -0.0024 15 6 1.8311 -8.4829 -0.0004 16 16 3.5807 -8.6391 0.0029 17 6 3.4617 -10.3906 0.0032 18 6 2.1769 -10.7783 0.0016 19 6 1.2538 -9.7269 0.0044 20 8 -0.1036 -9.9561 0.0033 21 6 -0.4813 -11.2888 -0.3670 22 6 0.3948 -12.2890 0.3944 23 8 1.7645 -12.0978 0.0057 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.6848 -3.7145 0.8895 27 1 2.6848 -3.7145 -0.8905 28 1 0.4369 -4.7621 0.8885 29 1 0.4375 -4.7617 -0.8914 30 1 2.7664 -6.0884 -0.0002 31 1 4.3063 -11.0636 0.0046 32 1 -1.5283 -11.4546 -0.1134 33 1 -0.3407 -11.4225 -1.4396 34 1 0.2865 -12.1256 1.4667 35 1 0.0864 -13.3049 0.1478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146535681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:53 Heat of formation + Delta-G solvation = -79.582525 kcal Electronic energy + Delta-G solvation = -20961.311914 eV Core-core repulsion = 17472.598237 eV Total energy + Delta-G solvation = -3488.713677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.14317 -40.75111 -38.10699 -37.39470 -36.65852 -35.53942 -33.25580 -31.27865 -30.79645 -29.25491 -26.34677 -25.10959 -24.70543 -23.14602 -22.25508 -20.37076 -20.21935 -19.31020 -18.36543 -18.12503 -17.48756 -16.94187 -16.73884 -16.44413 -16.20119 -15.83822 -15.72624 -15.42591 -15.20073 -15.13284 -14.93833 -14.55649 -14.13454 -13.70862 -13.11391 -13.04043 -12.63707 -12.59913 -12.40388 -12.12365 -12.11498 -12.04662 -11.86714 -11.81371 -11.24394 -10.97862 -10.31090 -9.68722 -9.07012 -9.05847 -7.96073 -5.27985 -0.76835 0.23924 0.48211 1.03029 1.49019 1.53183 1.59182 1.98265 2.01241 2.20967 2.45703 2.58591 3.05464 3.37922 3.52267 3.87359 3.90878 3.97470 4.03145 4.13398 4.19160 4.25567 4.39835 4.51212 4.56243 4.59103 4.84455 4.98258 5.10734 5.27285 5.48835 5.58851 5.95777 6.24161 6.37085 7.06118 7.30464 8.01480 8.25273 9.27548 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.037292 B = 0.002701 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.655320 B =10362.412061 C =11067.036729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.981 3.019 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.747 5.747 10 C 0.149 3.851 11 C 0.130 3.870 12 N -0.710 5.710 13 C 0.587 3.413 14 O -0.569 6.569 15 C -0.325 4.325 16 S 0.273 5.727 17 C -0.187 4.187 18 C 0.012 3.988 19 C 0.123 3.877 20 O -0.296 6.296 21 C 0.002 3.998 22 C 0.018 3.982 23 O -0.299 6.299 24 H 0.252 0.748 25 H 0.374 0.626 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.410 0.590 31 H 0.217 0.783 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.503 -29.945 0.065 31.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.381 4.381 8 H 0.102 0.898 9 N -0.390 5.390 10 C 0.022 3.978 11 C 0.005 3.995 12 N -0.363 5.363 13 C 0.376 3.624 14 O -0.450 6.450 15 C -0.445 4.445 16 S 0.537 5.463 17 C -0.325 4.325 18 C -0.044 4.044 19 C 0.060 3.940 20 O -0.210 6.210 21 C -0.073 4.073 22 C -0.057 4.057 23 O -0.215 6.215 24 H 0.061 0.939 25 H 0.206 0.794 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.247 0.753 31 H 0.233 0.767 32 H 0.167 0.833 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.953 -28.824 0.064 30.183 hybrid contribution -1.438 0.021 -0.006 1.438 sum 7.515 -28.804 0.057 29.768 Atomic orbital electron populations 1.69841 1.06890 1.26395 1.59079 1.25698 0.96446 1.01543 1.03281 0.85104 0.77089 0.78487 0.78401 1.20030 1.22331 1.20042 1.19629 0.91785 0.84781 1.41892 0.89780 1.42414 1.05768 1.01027 1.89818 1.20847 0.93500 0.83962 0.99457 1.21192 0.94853 0.82011 1.01417 1.45577 1.10500 1.04849 1.75420 1.15907 0.86801 0.83174 0.76500 1.90858 1.14710 1.87781 1.51683 1.22511 1.01070 0.94675 1.26216 1.83864 0.94418 0.97751 1.70302 1.25484 0.99021 1.00286 1.07670 1.18268 0.92446 0.84420 1.09260 1.19279 0.84956 0.92062 0.97686 1.87160 1.17134 1.33188 1.83494 1.24104 1.02871 0.79492 1.00854 1.23929 0.78834 1.02983 1.00001 1.87104 1.29909 1.18746 1.85702 0.93883 0.79435 0.94254 0.94257 0.92561 0.92547 0.75340 0.76651 0.83347 0.89886 0.90152 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.75 -38.83 5.60 -343.45 -1.92 -40.75 16 10 C 0.15 5.90 6.37 86.38 0.55 6.45 16 11 C 0.13 4.79 5.79 86.38 0.50 5.29 16 12 N -0.71 -21.67 5.54 -472.03 -2.62 -24.28 16 13 C 0.59 19.99 7.59 85.10 0.65 20.63 16 14 O -0.57 -24.51 15.86 11.67 0.19 -24.32 16 15 C -0.33 -8.71 6.25 22.87 0.14 -8.57 16 16 S 0.27 4.33 22.17 -56.49 -1.25 3.08 16 17 C -0.19 -2.65 11.17 66.90 0.75 -1.91 16 18 C 0.01 0.24 6.54 21.75 0.14 0.38 16 19 C 0.12 3.20 6.57 22.42 0.15 3.35 16 20 O -0.30 -8.24 9.60 -90.56 -0.87 -9.10 16 21 C 0.00 0.03 7.13 72.06 0.51 0.54 16 22 C 0.02 0.20 7.15 72.06 0.52 0.72 16 23 O -0.30 -5.05 10.78 -113.01 -1.22 -6.27 16 24 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.37 21.02 7.67 -92.70 -0.71 20.31 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.41 9.71 7.41 -92.70 -0.69 9.02 16 31 H 0.22 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 0.90 8.14 -2.38 -0.02 0.89 16 35 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -79.37 317.96 -0.42 -79.79 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.25 Total: 24.46 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.21 Total: 9.74 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -4.26 Total: -125.44 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.90 Total: -39.69 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.25 Total: 3.08 kcal Total: -79.37 -0.42 -79.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146535681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.209 kcal (2) G-P(sol) polarization free energy of solvation -79.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds