Wall clock time and date at job start Tue Mar 31 2020 04:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47150 * 270.00282 * 3 2 1 5 5 H 1.48503 * 109.47102 * 29.99561 * 3 2 1 6 6 H 1.48495 * 109.47482 * 149.99824 * 3 2 1 7 7 C 1.40060 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.41573 * 119.99336 * 0.02562 * 7 2 1 10 10 N 1.33444 * 119.24239 * 359.97438 * 9 7 2 11 11 C 1.32175 * 120.85826 * 179.97438 * 10 9 7 12 12 Cl 1.73603 * 120.33699 * 179.97438 * 11 10 9 13 13 C 1.38843 * 119.32529 * 359.72639 * 11 10 9 14 14 C 1.40003 * 118.59030 * 0.55146 * 13 11 10 15 15 N 1.38537 * 120.44689 * 179.71297 * 14 13 11 16 16 C 1.46501 * 120.00270 * 359.73371 * 15 14 13 17 17 H 1.09002 * 110.28731 * 34.29646 * 16 15 14 18 18 C 1.54382 * 110.40946 * 272.11212 * 16 15 14 19 19 N 1.48561 * 104.59231 * 217.20800 * 18 16 15 20 20 C 1.48551 * 104.22369 * 39.48238 * 19 18 16 21 21 C 1.54259 * 110.32785 * 156.42403 * 16 15 14 22 22 H 1.08994 * 110.32496 * 237.99666 * 21 16 15 23 23 C 1.53007 * 110.32228 * 0.10066 * 21 16 15 24 24 O 1.42895 * 109.47045 * 184.99885 * 23 21 16 25 25 N 1.32591 * 119.10234 * 359.45040 * 14 13 11 26 26 H 0.96999 * 120.00402 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.70369 * 180.30427 * 13 11 10 28 28 H 0.97008 * 120.00188 * 179.73064 * 15 14 13 29 29 H 1.09005 * 110.40941 * 335.98484 * 18 16 15 30 30 H 1.08998 * 110.41294 * 98.42738 * 18 16 15 31 31 H 1.00898 * 110.99761 * 159.04411 * 19 18 16 32 32 H 1.09004 * 110.40983 * 201.73644 * 20 19 18 33 33 H 1.09000 * 110.41267 * 79.29794 * 20 19 18 34 34 H 1.09001 * 109.46898 * 305.00253 * 23 21 16 35 35 H 1.09004 * 109.47134 * 64.99908 * 23 21 16 36 36 H 0.96702 * 113.99643 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4884 2.0465 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5384 1.4402 0.7000 7 6 2.0072 -1.2129 0.0005 8 1 3.0872 -1.2128 0.0001 9 6 1.2993 -2.4389 0.0005 10 7 -0.0350 -2.4212 0.0005 11 6 -0.7279 -3.5468 0.0000 12 17 -2.4635 -3.5079 0.0007 13 6 -0.0536 -4.7604 -0.0063 14 6 1.3463 -4.7491 -0.0001 15 7 2.0580 -5.9377 -0.0001 16 6 1.3458 -7.2180 -0.0007 17 1 0.4242 -7.1375 -0.5771 18 6 1.0369 -7.6629 1.4450 19 7 1.2126 -9.1379 1.4283 20 6 2.4025 -9.3541 0.5657 21 6 2.2441 -8.3306 -0.5791 22 1 1.7643 -8.7951 -1.4405 23 6 3.6078 -7.7607 -0.9748 24 8 4.3819 -8.7777 -1.6137 25 7 1.9818 -3.5854 0.0004 26 1 -0.4851 0.8400 -0.0004 27 1 -0.5976 -5.6935 -0.0118 28 1 3.0279 -5.9223 0.0003 29 1 1.7385 -7.2043 2.1420 30 1 0.0119 -7.4050 1.7113 31 1 1.3712 -9.4937 2.3591 32 1 2.4057 -10.3697 0.1699 33 1 3.3178 -9.1603 1.1250 34 1 3.4673 -6.9258 -1.6613 35 1 4.1293 -7.4137 -0.0827 36 1 5.2608 -8.4862 -1.8926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170772514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:46 Heat of formation + Delta-G solvation = 7.382087 kcal Electronic energy + Delta-G solvation = -21785.308681 eV Core-core repulsion = 18330.615117 eV Total energy + Delta-G solvation = -3454.693564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80996 -38.69629 -36.48726 -35.64426 -34.92752 -33.43230 -31.48220 -30.84165 -29.40196 -27.49514 -26.41564 -25.10196 -22.25424 -22.12265 -21.42149 -19.52301 -18.38620 -17.54293 -16.68602 -16.31131 -15.97751 -15.62013 -14.96798 -14.64699 -14.15395 -13.86809 -13.61897 -13.53376 -13.44139 -13.14715 -12.82812 -12.54191 -11.86743 -11.67422 -11.46165 -11.41099 -11.13594 -11.11304 -10.86551 -10.77913 -10.41619 -10.22216 -10.16783 -9.97019 -9.17094 -9.06169 -8.72234 -8.32181 -7.54000 -7.25264 -6.60987 -4.84701 2.48470 2.91458 2.94371 3.03011 3.06415 3.10111 3.56495 3.84315 4.01800 4.34934 4.48181 4.57052 4.72711 4.98168 5.19517 5.27537 5.31816 5.40777 5.62337 5.68498 5.80330 5.91951 5.96532 6.04242 6.05478 6.29975 6.39019 6.54431 6.78352 6.89284 7.08911 7.15190 7.44025 7.63595 8.04494 8.10946 8.46803 8.54193 8.99374 10.04259 10.18964 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.004413 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.137374 B = 6342.893394 C = 7608.676021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.065 3.935 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.394 4.394 8 H 0.096 0.904 9 C 0.434 3.566 10 N -0.526 5.526 11 C 0.270 3.730 12 Cl -0.081 7.081 13 C -0.405 4.405 14 C 0.454 3.546 15 N -0.727 5.727 16 C 0.166 3.834 17 H 0.097 0.903 18 C 0.020 3.980 19 N -0.666 5.666 20 C 0.047 3.953 21 C -0.097 4.097 22 H 0.095 0.905 23 C 0.079 3.921 24 O -0.573 6.573 25 N -0.642 5.642 26 H 0.278 0.722 27 H 0.113 0.887 28 H 0.396 0.604 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.337 0.663 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 -11.345 0.514 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.163 4.163 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.429 4.429 8 H 0.114 0.886 9 C 0.198 3.802 10 N -0.248 5.248 11 C 0.089 3.911 12 Cl -0.053 7.053 13 C -0.437 4.437 14 C 0.208 3.792 15 N -0.366 5.366 16 C 0.059 3.941 17 H 0.115 0.885 18 C -0.111 4.111 19 N -0.295 5.295 20 C -0.083 4.083 21 C -0.117 4.117 22 H 0.114 0.886 23 C 0.000 4.000 24 O -0.379 6.379 25 N -0.371 5.371 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.234 0.766 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.152 0.848 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.150 -10.871 0.141 11.319 hybrid contribution 1.178 0.572 0.550 1.421 sum 4.328 -10.299 0.691 11.192 Atomic orbital electron populations 1.70140 1.07241 1.28445 1.26296 1.26128 0.95051 1.01436 0.93681 0.86128 0.80316 0.79881 0.79398 1.19202 1.19936 1.18322 1.19354 0.94727 0.87293 1.41511 0.88645 1.19460 0.83615 0.89865 0.87232 1.68599 1.08139 1.25642 1.22378 1.21459 0.85413 0.90762 0.93513 1.98299 1.11545 1.98819 1.96649 1.20950 0.93148 0.97233 1.32409 1.18132 0.87456 0.86259 0.87397 1.44348 1.07802 1.01489 1.82930 1.21446 0.95722 0.81767 0.95215 0.88474 1.23517 1.02493 0.87766 0.97365 1.63707 1.37529 1.12346 1.15884 1.22899 0.91828 0.99749 0.93789 1.22118 0.94668 0.95785 0.99146 0.88641 1.22220 0.91217 0.90269 0.96263 1.86444 1.31452 1.39636 1.80337 1.68216 1.40147 0.96940 1.31840 0.91106 0.86926 0.76608 0.93384 0.89333 0.84794 0.89835 0.94072 0.92157 0.93532 0.77348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.17 11.42 55.55 0.63 -17.53 16 2 C 0.07 1.61 5.50 -17.36 -0.10 1.51 16 3 Si 0.92 18.01 29.56 -169.99 -5.02 12.98 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 7 C -0.39 -10.42 9.37 -37.63 -0.35 -10.77 16 8 H 0.10 2.40 7.85 -52.49 -0.41 1.99 16 9 C 0.43 11.93 7.37 -158.35 -1.17 10.76 16 10 N -0.53 -14.45 7.86 -9.83 -0.08 -14.52 16 11 C 0.27 6.59 7.33 -17.18 -0.13 6.47 16 12 Cl -0.08 -1.71 29.15 -51.86 -1.51 -3.22 16 13 C -0.40 -8.92 9.13 -38.70 -0.35 -9.28 16 14 C 0.45 9.95 7.71 -154.98 -1.19 8.76 16 15 N -0.73 -12.16 4.64 -52.43 -0.24 -12.40 16 16 C 0.17 2.32 3.06 -66.55 -0.20 2.12 16 17 H 0.10 1.46 6.50 -51.93 -0.34 1.12 16 18 C 0.02 0.26 7.18 -2.18 -0.02 0.24 16 19 N -0.67 -7.54 7.62 -109.66 -0.84 -8.38 16 20 C 0.05 0.51 6.91 -2.19 -0.02 0.49 16 21 C -0.10 -1.16 3.33 -89.24 -0.30 -1.46 16 22 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 23 C 0.08 0.88 4.99 37.16 0.19 1.06 16 24 O -0.57 -6.00 13.55 -35.23 -0.48 -6.48 16 25 N -0.64 -16.20 10.39 -11.90 -0.12 -16.32 16 26 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 27 H 0.11 2.20 6.34 -52.48 -0.33 1.87 16 28 H 0.40 6.20 6.05 -40.82 -0.25 5.95 16 29 H 0.05 0.66 8.06 -51.93 -0.42 0.24 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.34 3.21 8.92 -39.29 -0.35 2.86 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.43 7.75 -51.93 -0.40 0.03 16 34 H 0.06 0.74 7.43 -51.93 -0.39 0.35 16 35 H 0.05 0.50 7.13 -51.93 -0.37 0.13 16 36 H 0.38 2.37 9.12 45.56 0.42 2.78 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -30.14 315.26 -9.79 -39.93 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -3.24 Total: 11.28 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -3.63 Total: 9.92 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -0.65 Total: -69.16 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.48 Total: -6.48 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.98 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.51 Total: -3.22 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.14 -9.79 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170772514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.312 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds