Wall clock time and date at job start Tue Mar 31 2020 04:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47150 * 270.00282 * 3 2 1 5 5 H 1.48503 * 109.47102 * 29.99561 * 3 2 1 6 6 H 1.48495 * 109.47482 * 149.99824 * 3 2 1 7 7 C 1.40060 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.41573 * 119.99336 * 0.02562 * 7 2 1 10 10 N 1.33444 * 119.24239 * 359.97438 * 9 7 2 11 11 C 1.32175 * 120.85826 * 179.97438 * 10 9 7 12 12 Cl 1.73603 * 120.33699 * 179.97438 * 11 10 9 13 13 C 1.38843 * 119.32529 * 359.72639 * 11 10 9 14 14 C 1.40003 * 118.59030 * 0.55146 * 13 11 10 15 15 N 1.38537 * 120.44689 * 179.71297 * 14 13 11 16 16 C 1.46501 * 120.00270 * 359.73371 * 15 14 13 17 17 H 1.09002 * 110.28731 * 34.29646 * 16 15 14 18 18 C 1.54382 * 110.40946 * 272.11212 * 16 15 14 19 19 N 1.48561 * 104.59231 * 217.20800 * 18 16 15 20 20 C 1.48551 * 104.22369 * 39.48238 * 19 18 16 21 21 C 1.54259 * 110.32785 * 156.42403 * 16 15 14 22 22 H 1.08994 * 110.32496 * 237.99666 * 21 16 15 23 23 C 1.53007 * 110.32228 * 0.10066 * 21 16 15 24 24 O 1.42895 * 109.47045 * 184.99885 * 23 21 16 25 25 N 1.32591 * 119.10234 * 359.45040 * 14 13 11 26 26 H 0.96999 * 120.00402 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.70369 * 180.30427 * 13 11 10 28 28 H 0.97008 * 120.00188 * 179.73064 * 15 14 13 29 29 H 1.09005 * 110.40941 * 335.98484 * 18 16 15 30 30 H 1.08998 * 110.41294 * 98.42738 * 18 16 15 31 31 H 1.00898 * 110.99761 * 159.04411 * 19 18 16 32 32 H 1.09004 * 110.40983 * 201.73644 * 20 19 18 33 33 H 1.09000 * 110.41267 * 79.29794 * 20 19 18 34 34 H 1.09001 * 109.46898 * 305.00253 * 23 21 16 35 35 H 1.09004 * 109.47134 * 64.99908 * 23 21 16 36 36 H 0.96702 * 113.99643 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4884 2.0465 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5384 1.4402 0.7000 7 6 2.0072 -1.2129 0.0005 8 1 3.0872 -1.2128 0.0001 9 6 1.2993 -2.4389 0.0005 10 7 -0.0350 -2.4212 0.0005 11 6 -0.7279 -3.5468 0.0000 12 17 -2.4635 -3.5079 0.0007 13 6 -0.0536 -4.7604 -0.0063 14 6 1.3463 -4.7491 -0.0001 15 7 2.0580 -5.9377 -0.0001 16 6 1.3458 -7.2180 -0.0007 17 1 0.4242 -7.1375 -0.5771 18 6 1.0369 -7.6629 1.4450 19 7 1.2126 -9.1379 1.4283 20 6 2.4025 -9.3541 0.5657 21 6 2.2441 -8.3306 -0.5791 22 1 1.7643 -8.7951 -1.4405 23 6 3.6078 -7.7607 -0.9748 24 8 4.3819 -8.7777 -1.6137 25 7 1.9818 -3.5854 0.0004 26 1 -0.4851 0.8400 -0.0004 27 1 -0.5976 -5.6935 -0.0118 28 1 3.0279 -5.9223 0.0003 29 1 1.7385 -7.2043 2.1420 30 1 0.0119 -7.4050 1.7113 31 1 1.3712 -9.4937 2.3591 32 1 2.4057 -10.3697 0.1699 33 1 3.3178 -9.1603 1.1250 34 1 3.4673 -6.9258 -1.6613 35 1 4.1293 -7.4137 -0.0827 36 1 5.2608 -8.4862 -1.8926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170772514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:46 Heat of formation + Delta-G solvation = -16.438674 kcal Electronic energy + Delta-G solvation = -21786.341626 eV Core-core repulsion = 18330.615117 eV Total energy + Delta-G solvation = -3455.726509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22033 -40.17304 -37.43329 -37.34248 -36.44526 -35.16476 -33.17150 -32.17156 -30.87047 -28.79923 -28.24808 -26.04960 -23.97056 -23.82395 -22.55053 -20.73065 -19.91446 -18.80426 -18.21301 -17.57614 -17.30049 -16.96492 -16.40152 -15.98624 -15.55293 -15.48188 -15.06938 -14.93502 -14.69369 -14.47804 -14.26013 -13.70777 -13.19939 -13.10528 -12.90497 -12.80010 -12.76075 -12.50928 -12.16205 -12.03708 -11.92891 -11.83125 -11.59189 -10.99957 -10.93773 -10.86169 -10.14692 -9.64826 -9.43388 -8.88082 -8.43734 -6.79760 0.63351 1.11770 1.13911 1.42910 1.53721 1.59040 2.16158 2.26040 2.74669 3.09230 3.37334 3.52212 3.68845 3.88016 4.08727 4.15136 4.23949 4.26399 4.36882 4.43662 4.50684 4.59005 4.69727 4.76588 4.87993 4.96654 5.03339 5.08290 5.12377 5.29167 5.59288 5.99813 6.16301 6.32373 6.45416 6.65029 6.71079 6.82522 7.19562 8.18637 8.36396 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.004413 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.137374 B = 6342.893394 C = 7608.676021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.025 3.975 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.426 4.426 8 H 0.096 0.904 9 C 0.408 3.592 10 N -0.562 5.562 11 C 0.247 3.753 12 Cl -0.058 7.058 13 C -0.398 4.398 14 C 0.451 3.549 15 N -0.709 5.709 16 C 0.162 3.838 17 H 0.089 0.911 18 C 0.026 3.974 19 N -0.664 5.664 20 C 0.052 3.948 21 C -0.094 4.094 22 H 0.095 0.905 23 C 0.084 3.916 24 O -0.581 6.581 25 N -0.662 5.662 26 H 0.285 0.715 27 H 0.137 0.863 28 H 0.403 0.597 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.350 0.650 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -12.294 0.652 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.199 4.199 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.461 4.461 8 H 0.114 0.886 9 C 0.171 3.829 10 N -0.285 5.285 11 C 0.068 3.932 12 Cl -0.030 7.030 13 C -0.430 4.430 14 C 0.203 3.797 15 N -0.347 5.347 16 C 0.055 3.945 17 H 0.107 0.893 18 C -0.105 4.105 19 N -0.294 5.294 20 C -0.077 4.077 21 C -0.114 4.114 22 H 0.113 0.887 23 C 0.006 3.994 24 O -0.390 6.390 25 N -0.393 5.393 26 H 0.096 0.904 27 H 0.155 0.845 28 H 0.242 0.758 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.001 -11.910 0.281 12.568 hybrid contribution 0.885 0.646 0.487 1.199 sum 4.886 -11.264 0.768 12.302 Atomic orbital electron populations 1.70222 1.08960 1.29846 1.26983 1.27070 0.95818 1.04652 0.92407 0.84949 0.78825 0.74722 0.79642 1.18498 1.18956 1.17772 1.19698 0.95009 0.88314 1.43119 0.88598 1.19870 0.84236 0.90990 0.87800 1.68586 1.08441 1.27059 1.24372 1.21902 0.86685 0.91090 0.93515 1.98288 1.09416 1.98795 1.96542 1.21191 0.93425 0.97452 1.30928 1.18436 0.87969 0.86915 0.86355 1.44404 1.08136 1.00869 1.81298 1.21613 0.95765 0.80953 0.96141 0.89321 1.23349 1.01913 0.89029 0.96238 1.63685 1.38029 1.10789 1.16945 1.22893 0.91863 0.99767 0.93212 1.22085 0.94693 0.95049 0.99534 0.88687 1.22054 0.91118 0.89951 0.96278 1.86398 1.32786 1.39471 1.80294 1.68251 1.40436 0.97536 1.33111 0.90439 0.84519 0.75786 0.93943 0.90010 0.83352 0.88900 0.93296 0.93491 0.92827 0.75172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.08 11.42 21.84 0.25 -38.83 16 2 C 0.03 1.25 5.50 85.31 0.47 1.72 16 3 Si 1.00 36.97 29.56 68.60 2.03 38.99 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.27 -9.30 7.11 99.48 0.71 -8.60 16 6 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 7 C -0.43 -23.14 9.37 23.53 0.22 -22.92 16 8 H 0.10 4.96 7.85 -2.91 -0.02 4.94 16 9 C 0.41 23.06 7.37 135.16 1.00 24.05 16 10 N -0.56 -31.63 7.86 -185.02 -1.45 -33.08 16 11 C 0.25 12.21 7.33 84.79 0.62 12.84 16 12 Cl -0.06 -2.45 29.15 -2.72 -0.08 -2.53 16 13 C -0.40 -17.47 9.13 22.84 0.21 -17.26 16 14 C 0.45 19.77 7.71 133.38 1.03 20.80 16 15 N -0.71 -23.11 4.64 -319.80 -1.48 -24.60 16 16 C 0.16 4.29 3.06 45.89 0.14 4.43 16 17 H 0.09 2.54 6.50 -2.39 -0.02 2.53 16 18 C 0.03 0.64 7.18 86.45 0.62 1.26 16 19 N -0.66 -13.46 7.62 -500.87 -3.82 -17.28 16 20 C 0.05 0.99 6.91 86.45 0.60 1.59 16 21 C -0.09 -2.06 3.33 -9.90 -0.03 -2.09 16 22 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 23 C 0.08 1.73 4.99 71.98 0.36 2.09 16 24 O -0.58 -10.80 13.55 -148.98 -2.02 -12.82 16 25 N -0.66 -34.04 10.39 -191.56 -1.99 -36.03 16 26 H 0.28 13.52 8.29 -92.71 -0.77 12.75 16 27 H 0.14 5.20 6.34 -2.91 -0.02 5.18 16 28 H 0.40 12.20 6.05 -92.70 -0.56 11.64 16 29 H 0.04 1.10 8.06 -2.38 -0.02 1.08 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.35 5.76 8.92 -89.70 -0.80 4.96 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 0.88 7.75 -2.39 -0.02 0.86 16 34 H 0.05 1.09 7.43 -2.39 -0.02 1.07 16 35 H 0.05 1.03 7.13 -2.39 -0.02 1.01 16 36 H 0.40 4.04 9.12 -74.06 -0.68 3.36 16 Total: -1.00 -65.74 315.26 -4.21 -69.95 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.87 Total: 29.72 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 5.23 Total: 26.50 kcal Atomic # 7 Polarization: -141.32 SS G_CDS: -8.50 Total: -149.82 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -2.02 Total: -12.82 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.08 Total: -2.53 kcal Total: -65.74 -4.21 -69.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170772514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.512 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds