Wall clock time and date at job start Tue Mar 31 2020 04:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48507 * 109.46936 * 269.99932 * 3 2 1 5 5 H 1.48495 * 109.47230 * 30.00108 * 3 2 1 6 6 H 1.48498 * 109.47010 * 150.00452 * 3 2 1 7 7 C 1.40058 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.41568 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.33444 * 119.24263 * 359.97438 * 9 7 2 11 11 C 1.32170 * 120.86500 * 180.02562 * 10 9 7 12 12 Cl 1.73608 * 120.34329 * 179.97438 * 11 10 9 13 13 C 1.38848 * 119.32272 * 359.97438 * 11 10 9 14 14 C 1.39997 * 118.58920 * 0.02562 * 13 11 10 15 15 N 1.38547 * 120.44671 * 179.97438 * 14 13 11 16 16 C 1.46500 * 120.00172 * 0.02562 * 15 14 13 17 17 H 1.09006 * 110.64191 * 31.83937 * 16 15 14 18 18 C 1.54933 * 110.72177 * 268.50064 * 16 15 14 19 19 N 1.48534 * 103.22918 * 204.22702 * 18 16 15 20 20 C 1.47906 * 105.81681 * 39.20123 * 19 18 16 21 21 C 1.53996 * 107.06117 * 334.67510 * 20 19 18 22 22 H 1.08993 * 110.30544 * 120.13627 * 21 20 19 23 23 C 1.52999 * 110.30497 * 242.20934 * 21 20 19 24 24 O 1.42895 * 109.47043 * 293.54096 * 23 21 20 25 25 N 1.32591 * 119.10848 * 0.25125 * 14 13 11 26 26 H 0.96996 * 120.00326 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.70177 * 179.97438 * 13 11 10 28 28 H 0.97002 * 120.00020 * 179.97438 * 15 14 13 29 29 H 1.09004 * 110.67035 * 85.78708 * 18 16 15 30 30 H 1.09002 * 110.66721 * 322.66174 * 18 16 15 31 31 H 1.00905 * 110.99850 * 278.69336 * 19 18 16 32 32 H 1.09003 * 109.91125 * 94.02808 * 20 19 18 33 33 H 1.08997 * 109.91647 * 215.12246 * 20 19 18 34 34 H 1.08997 * 109.47518 * 53.54845 * 23 21 20 35 35 H 1.09004 * 109.46637 * 173.54249 * 23 21 20 36 36 H 0.96707 * 114.00068 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0464 -1.4002 5 1 1.4385 2.6526 0.7000 6 1 3.5385 1.4401 0.6999 7 6 2.0072 -1.2130 -0.0005 8 1 3.0872 -1.2130 -0.0010 9 6 1.2994 -2.4390 -0.0016 10 7 -0.0350 -2.4213 -0.0016 11 6 -0.7280 -3.5467 -0.0021 12 17 -2.4636 -3.5079 -0.0014 13 6 -0.0537 -4.7605 -0.0032 14 6 1.3462 -4.7492 -0.0032 15 7 2.0579 -5.9379 -0.0037 16 6 1.3457 -7.2181 -0.0049 17 1 0.4018 -7.1322 -0.5433 18 6 1.1118 -7.7166 1.4433 19 7 0.9687 -9.1857 1.2781 20 6 1.9633 -9.5751 0.2550 21 6 2.2251 -8.3327 -0.6165 22 1 3.2774 -8.0529 -0.5697 23 6 1.8122 -8.6034 -2.0646 24 8 2.6698 -9.5988 -2.6263 25 7 1.9818 -3.5855 0.0029 26 1 -0.4850 0.8400 0.0004 27 1 -0.5977 -5.6935 -0.0032 28 1 3.0278 -5.9224 -0.0041 29 1 0.1998 -7.2852 1.8561 30 1 1.9692 -7.4820 2.0741 31 1 0.0341 -9.4273 0.9843 32 1 2.8879 -9.8917 0.7376 33 1 1.5681 -10.3854 -0.3576 34 1 0.7812 -8.9564 -2.0886 35 1 1.8948 -7.6837 -2.6438 36 1 2.4658 -9.8207 -3.5452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170772524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:48 Heat of formation + Delta-G solvation = -1.693180 kcal Electronic energy + Delta-G solvation = -21655.959074 eV Core-core repulsion = 18200.871978 eV Total energy + Delta-G solvation = -3455.087097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73631 -38.75041 -36.60038 -35.67177 -34.90567 -33.40484 -31.39606 -30.79796 -29.54860 -27.44674 -26.42712 -24.87312 -22.29103 -22.25474 -21.14733 -20.13630 -18.10445 -17.62210 -16.70484 -16.48219 -15.93957 -15.62009 -14.92426 -14.47034 -14.36671 -14.12953 -13.86313 -13.53043 -13.30973 -12.90639 -12.63532 -12.43985 -11.99783 -11.61394 -11.45213 -11.42421 -11.34793 -11.10817 -10.87053 -10.77015 -10.42415 -10.25142 -10.22778 -10.09024 -9.22419 -9.07721 -8.77610 -8.29863 -7.54489 -7.21557 -6.61942 -4.85503 2.46854 2.91214 2.91650 3.03196 3.06657 3.10214 3.60139 3.84798 3.89961 4.27866 4.55596 4.59718 4.74629 4.88796 5.12627 5.22272 5.30337 5.42539 5.51089 5.67322 5.80201 5.87749 5.97825 6.02443 6.05147 6.31980 6.34594 6.57097 6.75990 6.87770 7.07964 7.21651 7.38504 7.63599 8.05724 8.12884 8.46488 8.53865 8.99167 10.03583 10.18252 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.004078 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.090840 B = 6864.741852 C = 7665.189257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.065 3.935 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.096 0.904 9 C 0.434 3.566 10 N -0.527 5.527 11 C 0.270 3.730 12 Cl -0.082 7.082 13 C -0.409 4.409 14 C 0.457 3.543 15 N -0.718 5.718 16 C 0.137 3.863 17 H 0.090 0.910 18 C 0.029 3.971 19 N -0.674 5.674 20 C 0.055 3.945 21 C -0.127 4.127 22 H 0.091 0.909 23 C 0.085 3.915 24 O -0.573 6.573 25 N -0.640 5.640 26 H 0.278 0.722 27 H 0.109 0.891 28 H 0.399 0.601 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.336 0.664 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -12.577 -2.476 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.163 4.163 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.427 4.427 8 H 0.114 0.886 9 C 0.198 3.802 10 N -0.248 5.248 11 C 0.089 3.911 12 Cl -0.054 7.054 13 C -0.441 4.441 14 C 0.210 3.790 15 N -0.354 5.354 16 C 0.028 3.972 17 H 0.108 0.892 18 C -0.102 4.102 19 N -0.300 5.300 20 C -0.075 4.075 21 C -0.148 4.148 22 H 0.109 0.891 23 C 0.007 3.993 24 O -0.378 6.378 25 N -0.370 5.370 26 H 0.089 0.911 27 H 0.127 0.873 28 H 0.234 0.766 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.152 0.848 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.931 -11.771 -1.257 11.874 hybrid contribution -0.734 0.285 -1.480 1.677 sum 0.196 -11.486 -2.737 11.809 Atomic orbital electron populations 1.70145 1.07258 1.28471 1.26246 1.26141 0.95062 1.01482 0.93652 0.86116 0.80350 0.79798 0.79407 1.19199 1.19923 1.18256 1.19377 0.94795 0.87287 1.41238 0.88569 1.19465 0.83573 0.89901 0.87231 1.68590 1.08166 1.25623 1.22400 1.21441 0.85353 0.90772 0.93546 1.98297 1.11658 1.98823 1.96665 1.20883 0.93129 0.97014 1.33120 1.18113 0.87353 0.86274 0.87305 1.43979 1.07707 1.01075 1.82670 1.22320 0.95654 0.82684 0.96561 0.89212 1.23632 1.03385 0.86735 0.96445 1.62763 1.08623 1.13990 1.44646 1.22677 0.97321 0.95896 0.91623 1.22606 1.01787 0.96414 0.93990 0.89116 1.22193 0.92448 0.90950 0.93674 1.86457 1.59182 1.60389 1.31810 1.68233 1.40078 0.96912 1.31777 0.91100 0.87305 0.76580 0.89924 0.89625 0.84846 0.90396 0.91020 0.93622 0.93089 0.77411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.17 11.42 55.55 0.63 -17.53 16 2 C 0.06 1.60 5.50 -17.35 -0.10 1.51 16 3 Si 0.92 18.08 29.56 -169.99 -5.02 13.05 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.39 -10.42 9.37 -37.63 -0.35 -10.78 16 8 H 0.10 2.44 7.85 -52.49 -0.41 2.03 16 9 C 0.43 11.97 7.37 -158.34 -1.17 10.80 16 10 N -0.53 -14.44 7.86 -9.83 -0.08 -14.51 16 11 C 0.27 6.56 7.33 -17.18 -0.13 6.43 16 12 Cl -0.08 -1.71 29.15 -51.86 -1.51 -3.22 16 13 C -0.41 -8.91 9.13 -38.70 -0.35 -9.26 16 14 C 0.46 10.01 7.71 -154.97 -1.19 8.82 16 15 N -0.72 -12.10 5.33 -51.97 -0.28 -12.37 16 16 C 0.14 1.82 2.71 -66.07 -0.18 1.64 16 17 H 0.09 1.24 6.13 -51.93 -0.32 0.92 16 18 C 0.03 0.37 7.23 -1.90 -0.01 0.36 16 19 N -0.67 -7.43 7.51 -110.08 -0.83 -8.25 16 20 C 0.05 0.58 7.03 -2.75 -0.02 0.56 16 21 C -0.13 -1.44 3.01 -89.26 -0.27 -1.71 16 22 H 0.09 1.10 7.75 -51.93 -0.40 0.70 16 23 C 0.09 0.89 6.12 37.16 0.23 1.11 16 24 O -0.57 -5.69 13.41 -35.23 -0.47 -6.16 16 25 N -0.64 -16.31 10.39 -11.90 -0.12 -16.43 16 26 H 0.28 6.49 8.29 -40.82 -0.34 6.16 16 27 H 0.11 2.07 6.30 -52.49 -0.33 1.74 16 28 H 0.40 6.45 8.51 -40.82 -0.35 6.11 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.34 3.19 8.92 -39.29 -0.35 2.84 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.69 7.61 -51.93 -0.40 0.30 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.38 2.11 9.12 45.56 0.42 2.53 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -30.24 319.63 -9.79 -40.03 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.39 Total: 11.10 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -3.54 Total: 9.48 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -0.67 Total: -69.10 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.47 Total: -6.16 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.05 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.51 Total: -3.22 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.24 -9.79 -40.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170772524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.339 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds