Wall clock time and date at job start Tue Mar 31 2020 04:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48507 * 109.46936 * 269.99932 * 3 2 1 5 5 H 1.48495 * 109.47230 * 30.00108 * 3 2 1 6 6 H 1.48498 * 109.47010 * 150.00452 * 3 2 1 7 7 C 1.40058 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.41568 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.33444 * 119.24263 * 359.97438 * 9 7 2 11 11 C 1.32170 * 120.86500 * 180.02562 * 10 9 7 12 12 Cl 1.73608 * 120.34329 * 179.97438 * 11 10 9 13 13 C 1.38848 * 119.32272 * 359.97438 * 11 10 9 14 14 C 1.39997 * 118.58920 * 0.02562 * 13 11 10 15 15 N 1.38547 * 120.44671 * 179.97438 * 14 13 11 16 16 C 1.46500 * 120.00172 * 0.02562 * 15 14 13 17 17 H 1.09006 * 110.64191 * 31.83937 * 16 15 14 18 18 C 1.54933 * 110.72177 * 268.50064 * 16 15 14 19 19 N 1.48534 * 103.22918 * 204.22702 * 18 16 15 20 20 C 1.47906 * 105.81681 * 39.20123 * 19 18 16 21 21 C 1.53996 * 107.06117 * 334.67510 * 20 19 18 22 22 H 1.08993 * 110.30544 * 120.13627 * 21 20 19 23 23 C 1.52999 * 110.30497 * 242.20934 * 21 20 19 24 24 O 1.42895 * 109.47043 * 293.54096 * 23 21 20 25 25 N 1.32591 * 119.10848 * 0.25125 * 14 13 11 26 26 H 0.96996 * 120.00326 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.70177 * 179.97438 * 13 11 10 28 28 H 0.97002 * 120.00020 * 179.97438 * 15 14 13 29 29 H 1.09004 * 110.67035 * 85.78708 * 18 16 15 30 30 H 1.09002 * 110.66721 * 322.66174 * 18 16 15 31 31 H 1.00905 * 110.99850 * 278.69336 * 19 18 16 32 32 H 1.09003 * 109.91125 * 94.02808 * 20 19 18 33 33 H 1.08997 * 109.91647 * 215.12246 * 20 19 18 34 34 H 1.08997 * 109.47518 * 53.54845 * 23 21 20 35 35 H 1.09004 * 109.46637 * 173.54249 * 23 21 20 36 36 H 0.96707 * 114.00068 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0464 -1.4002 5 1 1.4385 2.6526 0.7000 6 1 3.5385 1.4401 0.6999 7 6 2.0072 -1.2130 -0.0005 8 1 3.0872 -1.2130 -0.0010 9 6 1.2994 -2.4390 -0.0016 10 7 -0.0350 -2.4213 -0.0016 11 6 -0.7280 -3.5467 -0.0021 12 17 -2.4636 -3.5079 -0.0014 13 6 -0.0537 -4.7605 -0.0032 14 6 1.3462 -4.7492 -0.0032 15 7 2.0579 -5.9379 -0.0037 16 6 1.3457 -7.2181 -0.0049 17 1 0.4018 -7.1322 -0.5433 18 6 1.1118 -7.7166 1.4433 19 7 0.9687 -9.1857 1.2781 20 6 1.9633 -9.5751 0.2550 21 6 2.2251 -8.3327 -0.6165 22 1 3.2774 -8.0529 -0.5697 23 6 1.8122 -8.6034 -2.0646 24 8 2.6698 -9.5988 -2.6263 25 7 1.9818 -3.5855 0.0029 26 1 -0.4850 0.8400 0.0004 27 1 -0.5977 -5.6935 -0.0032 28 1 3.0278 -5.9224 -0.0041 29 1 0.1998 -7.2852 1.8561 30 1 1.9692 -7.4820 2.0741 31 1 0.0341 -9.4273 0.9843 32 1 2.8879 -9.8917 0.7376 33 1 1.5681 -10.3854 -0.3576 34 1 0.7812 -8.9564 -2.0886 35 1 1.8948 -7.6837 -2.6438 36 1 2.4658 -9.8207 -3.5452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170772524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:48 Heat of formation + Delta-G solvation = -25.991067 kcal Electronic energy + Delta-G solvation = -21657.012710 eV Core-core repulsion = 18200.871978 eV Total energy + Delta-G solvation = -3456.140732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = -0.01 seconds Orbital eigenvalues (eV) -41.15057 -40.16759 -37.50379 -37.36767 -36.42257 -35.14416 -33.12987 -31.96973 -31.05394 -28.69850 -28.26712 -25.78035 -24.06380 -23.77168 -22.43242 -21.19238 -19.83438 -18.60538 -18.18495 -17.79855 -17.31888 -16.81493 -16.44798 -15.96162 -15.61266 -15.37666 -15.21632 -15.08085 -14.72333 -14.58402 -13.75214 -13.52067 -13.19998 -13.10084 -12.94083 -12.85516 -12.76804 -12.42953 -12.28169 -12.03409 -11.95129 -11.85668 -11.56344 -10.99849 -10.95641 -10.89248 -10.20290 -9.71505 -9.43586 -8.78651 -8.44705 -6.80725 0.62631 1.11982 1.12520 1.42418 1.53153 1.58527 2.17400 2.27728 2.73738 3.06784 3.30684 3.65153 3.77635 3.86817 3.98068 4.16603 4.23168 4.29798 4.35457 4.46173 4.55940 4.59574 4.63415 4.75537 4.95172 4.96957 5.02410 5.10270 5.13702 5.32587 5.64103 6.00058 6.16006 6.40255 6.45771 6.65987 6.71330 6.83837 7.19992 8.18578 8.35571 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.004078 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.090840 B = 6864.741852 C = 7665.189257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.025 3.975 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.427 4.427 8 H 0.094 0.906 9 C 0.409 3.591 10 N -0.563 5.563 11 C 0.247 3.753 12 Cl -0.057 7.057 13 C -0.398 4.398 14 C 0.452 3.548 15 N -0.704 5.704 16 C 0.135 3.865 17 H 0.091 0.909 18 C 0.035 3.965 19 N -0.671 5.671 20 C 0.061 3.939 21 C -0.121 4.121 22 H 0.082 0.918 23 C 0.090 3.910 24 O -0.584 6.584 25 N -0.665 5.665 26 H 0.285 0.715 27 H 0.139 0.861 28 H 0.402 0.598 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.348 0.652 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -13.788 -2.772 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.199 4.199 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.462 4.462 8 H 0.112 0.888 9 C 0.172 3.828 10 N -0.285 5.285 11 C 0.068 3.932 12 Cl -0.029 7.029 13 C -0.431 4.431 14 C 0.204 3.796 15 N -0.339 5.339 16 C 0.027 3.973 17 H 0.109 0.891 18 C -0.096 4.096 19 N -0.299 5.299 20 C -0.069 4.069 21 C -0.141 4.141 22 H 0.100 0.900 23 C 0.012 3.988 24 O -0.393 6.393 25 N -0.396 5.396 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.238 0.762 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.165 0.835 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.877 -13.083 -1.567 13.205 hybrid contribution -0.769 0.423 -1.408 1.659 sum 0.108 -12.660 -2.975 13.005 Atomic orbital electron populations 1.70221 1.08915 1.29862 1.26949 1.27064 0.95837 1.04616 0.92398 0.84951 0.78815 0.74726 0.79665 1.18458 1.18833 1.17887 1.19702 0.94987 0.88411 1.43101 0.88752 1.19853 0.84252 0.90954 0.87754 1.68575 1.08384 1.27152 1.24408 1.21906 0.86713 0.91089 0.93482 1.98288 1.09317 1.98794 1.96545 1.21143 0.93217 0.97417 1.31293 1.18433 0.87995 0.86827 0.86323 1.44102 1.07945 1.00798 1.81050 1.22529 0.95812 0.81462 0.97466 0.89082 1.23470 1.02671 0.87913 0.95551 1.62725 1.09616 1.12424 1.45137 1.22649 0.97200 0.95679 0.91333 1.22524 1.00778 0.95834 0.95007 0.89965 1.22087 0.93381 0.90748 0.92614 1.86407 1.59349 1.59977 1.33558 1.68261 1.40561 0.97655 1.33171 0.90408 0.84374 0.76183 0.90363 0.90766 0.83495 0.90643 0.89510 0.91874 0.94458 0.75173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.07 11.42 21.84 0.25 -38.82 16 2 C 0.03 1.28 5.50 85.30 0.47 1.74 16 3 Si 1.00 37.29 29.56 68.60 2.03 39.31 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 6 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.43 -23.42 9.37 23.53 0.22 -23.20 16 8 H 0.09 4.97 7.85 -2.91 -0.02 4.95 16 9 C 0.41 23.24 7.37 135.16 1.00 24.24 16 10 N -0.56 -31.59 7.86 -185.01 -1.45 -33.04 16 11 C 0.25 12.06 7.33 84.79 0.62 12.68 16 12 Cl -0.06 -2.36 29.15 -2.72 -0.08 -2.43 16 13 C -0.40 -17.12 9.13 22.84 0.21 -16.91 16 14 C 0.45 19.82 7.71 133.37 1.03 20.85 16 15 N -0.70 -23.22 5.33 -318.35 -1.70 -24.92 16 16 C 0.14 3.36 2.71 46.19 0.12 3.48 16 17 H 0.09 2.29 6.13 -2.38 -0.01 2.27 16 18 C 0.04 0.84 7.23 86.65 0.63 1.47 16 19 N -0.67 -13.14 7.51 -502.19 -3.77 -16.91 16 20 C 0.06 1.12 7.03 86.45 0.61 1.73 16 21 C -0.12 -2.49 3.01 -9.92 -0.03 -2.52 16 22 H 0.08 1.87 7.75 -2.39 -0.02 1.86 16 23 C 0.09 1.65 6.12 71.98 0.44 2.09 16 24 O -0.58 -10.12 13.41 -148.98 -2.00 -12.12 16 25 N -0.67 -34.65 10.39 -191.55 -1.99 -36.64 16 26 H 0.28 13.52 8.29 -92.71 -0.77 12.75 16 27 H 0.14 4.97 6.30 -2.91 -0.02 4.96 16 28 H 0.40 12.86 8.51 -92.71 -0.79 12.07 16 29 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.35 5.57 8.92 -89.69 -0.80 4.77 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.38 7.61 -2.39 -0.02 1.36 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.40 3.41 9.12 -74.05 -0.68 2.73 16 Total: -1.00 -66.44 319.63 -4.50 -70.95 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -1.10 Total: 28.97 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 5.31 Total: 25.66 kcal Atomic # 7 Polarization: -141.67 SS G_CDS: -8.66 Total: -150.34 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -2.00 Total: -12.12 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.43 kcal Total: -66.44 -4.50 -70.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170772524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.956 kcal (2) G-P(sol) polarization free energy of solvation -66.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.01 seconds