Wall clock time and date at job start Tue Mar 31 2020 04:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86800 * 120.00700 * 2 1 4 4 H 1.48495 * 109.47086 * 239.99963 * 3 2 1 5 5 H 1.48498 * 109.47075 * 119.99669 * 3 2 1 6 6 H 1.48504 * 109.46763 * 359.97438 * 3 2 1 7 7 C 1.40056 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00208 * 355.89364 * 7 2 1 9 9 C 1.41575 * 120.00353 * 175.90093 * 7 2 1 10 10 N 1.33450 * 119.23448 * 6.77186 * 9 7 2 11 11 C 1.32175 * 120.86098 * 180.02562 * 10 9 7 12 12 Cl 1.73606 * 120.33870 * 180.02562 * 11 10 9 13 13 C 1.38842 * 119.32189 * 359.97438 * 11 10 9 14 14 C 1.40005 * 118.59279 * 0.02562 * 13 11 10 15 15 N 1.38540 * 120.44652 * 179.97438 * 14 13 11 16 16 C 1.46494 * 120.00040 * 0.02562 * 15 14 13 17 17 H 1.09003 * 110.27655 * 325.70006 * 16 15 14 18 18 C 1.53989 * 110.30970 * 87.79237 * 16 15 14 19 19 N 1.47906 * 107.06320 * 117.68932 * 18 16 15 20 20 C 1.48535 * 105.81505 * 25.32881 * 19 18 16 21 21 C 1.54601 * 110.30630 * 203.60896 * 16 15 14 22 22 H 1.08995 * 110.72409 * 337.48683 * 21 16 15 23 23 C 1.53000 * 110.72151 * 100.77274 * 21 16 15 24 24 O 1.42903 * 109.47348 * 184.99884 * 23 21 16 25 25 N 1.32590 * 119.09823 * 359.73065 * 14 13 11 26 26 H 0.96997 * 120.00523 * 185.15540 * 1 2 3 27 27 H 1.08000 * 120.70379 * 179.97438 * 13 11 10 28 28 H 0.97001 * 119.99561 * 180.02562 * 15 14 13 29 29 H 1.08999 * 109.92002 * 237.04189 * 18 16 15 30 30 H 1.09003 * 109.92186 * 358.13764 * 18 16 15 31 31 H 1.00899 * 110.99768 * 264.82060 * 19 18 16 32 32 H 1.09001 * 110.66458 * 79.23227 * 20 19 18 33 33 H 1.09000 * 110.66184 * 202.19068 * 20 19 18 34 34 H 1.08998 * 109.47031 * 304.99765 * 23 21 16 35 35 H 1.09000 * 109.47458 * 64.99608 * 23 21 16 36 36 H 0.96698 * 113.99835 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2411 1.6176 0.0000 4 1 3.0948 1.6962 -1.2125 5 1 3.0948 1.6962 1.2125 6 1 1.2762 2.7464 -0.0006 7 6 2.0071 -1.2130 -0.0005 8 1 1.4691 -2.1471 0.0660 9 6 3.4201 -1.2147 -0.0882 10 7 4.0780 -0.0550 -0.0324 11 6 5.3969 -0.0192 -0.1116 12 17 6.2390 1.4970 -0.0368 13 6 6.1020 -1.2068 -0.2541 14 6 5.3859 -2.4086 -0.3098 15 7 6.0506 -3.6158 -0.4520 16 6 7.5124 -3.6407 -0.5446 17 1 7.8726 -2.7576 -1.0722 18 6 8.1358 -3.7145 0.8616 19 7 8.8874 -4.9861 0.9369 20 6 9.2480 -5.3268 -0.4632 21 6 7.9826 -4.9253 -1.2650 22 1 7.2224 -5.7037 -1.2007 23 6 8.3348 -4.6295 -2.7242 24 8 8.6533 -5.8508 -3.3944 25 7 4.0635 -2.3760 -0.2197 26 1 -0.4851 -0.8366 0.0755 27 1 7.1799 -1.2035 -0.3214 28 1 5.5479 -4.4446 -0.4902 29 1 8.8128 -2.8736 1.0122 30 1 7.3505 -3.6986 1.6173 31 1 8.3258 -5.7139 1.3529 32 1 10.1100 -4.7454 -0.7907 33 1 9.4461 -6.3942 -0.5605 34 1 7.4839 -4.1570 -3.2148 35 1 9.1939 -3.9596 -2.7620 36 1 8.8867 -5.7388 -4.3261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170772526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:50 Heat of formation + Delta-G solvation = -43.235451 kcal Electronic energy + Delta-G solvation = -21798.518304 eV Core-core repulsion = 18341.629799 eV Total energy + Delta-G solvation = -3456.888505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50195 -40.29550 -37.74378 -37.49112 -36.60062 -35.50831 -33.46317 -32.25474 -31.38475 -28.87661 -28.21796 -25.71537 -24.38134 -23.64848 -22.38986 -21.34792 -20.61205 -18.91203 -18.43612 -18.10263 -17.41464 -16.50382 -16.44729 -16.13622 -15.99139 -15.73810 -15.51413 -15.12038 -14.83088 -14.43846 -14.23122 -14.12830 -13.43521 -13.15986 -13.01438 -12.79870 -12.66771 -12.56803 -12.38688 -12.19548 -11.77873 -11.74475 -11.65877 -11.32994 -10.97734 -10.84643 -10.42535 -9.80581 -9.63807 -9.45340 -8.98903 -7.13661 0.35110 0.67937 0.79348 1.59967 1.67172 2.01041 2.08495 2.42116 2.53851 2.97881 3.33854 3.47095 3.63946 3.79375 3.86767 3.91601 4.15193 4.18479 4.30015 4.37522 4.39615 4.54040 4.63475 4.66763 4.74347 4.89742 4.97341 5.03596 5.14116 5.28138 5.65176 5.69810 5.85331 6.12941 6.30680 6.38307 6.44077 6.79052 6.84662 7.74292 7.84025 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.004386 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.350672 B = 6382.353722 C = 6984.518971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.027 3.973 3 Si 1.184 2.816 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.326 1.326 7 C -0.469 4.469 8 H 0.074 0.926 9 C 0.432 3.568 10 N -0.645 5.645 11 C 0.270 3.730 12 Cl -0.036 7.036 13 C -0.372 4.372 14 C 0.464 3.536 15 N -0.701 5.701 16 C 0.134 3.866 17 H 0.099 0.901 18 C 0.033 3.967 19 N -0.674 5.674 20 C 0.062 3.938 21 C -0.124 4.124 22 H 0.081 0.919 23 C 0.091 3.909 24 O -0.587 6.587 25 N -0.656 5.656 26 H 0.286 0.714 27 H 0.158 0.842 28 H 0.403 0.597 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.343 0.657 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.999 -7.434 -3.693 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.193 4.193 3 Si 1.017 2.983 4 H -0.220 1.220 5 H -0.215 1.215 6 H -0.260 1.260 7 C -0.506 4.506 8 H 0.092 0.908 9 C 0.194 3.806 10 N -0.375 5.375 11 C 0.098 3.902 12 Cl -0.008 7.008 13 C -0.404 4.404 14 C 0.215 3.785 15 N -0.335 5.335 16 C 0.027 3.973 17 H 0.117 0.883 18 C -0.099 4.099 19 N -0.301 5.301 20 C -0.068 4.068 21 C -0.144 4.144 22 H 0.099 0.901 23 C 0.013 3.987 24 O -0.395 6.395 25 N -0.386 5.386 26 H 0.098 0.902 27 H 0.175 0.825 28 H 0.239 0.761 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.158 0.842 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 18.481 -5.725 -2.873 19.559 hybrid contribution -0.590 -2.031 -0.879 2.291 sum 17.890 -7.757 -3.752 19.857 Atomic orbital electron populations 1.70645 1.08143 1.33104 1.31152 1.28418 0.95523 1.07237 0.88126 0.81372 0.69749 0.67904 0.79275 1.21979 1.21469 1.25962 1.20480 0.89334 0.96284 1.44468 0.90793 1.19458 0.93856 0.80996 0.86268 1.66324 1.08762 1.29766 1.32658 1.21636 0.89379 0.87492 0.91719 1.98334 1.74689 1.31585 1.96176 1.21252 1.01411 0.89596 1.28153 1.18540 0.87988 0.86910 0.85021 1.44429 1.05681 1.04367 1.79022 1.22329 0.78198 0.99492 0.97256 0.88348 1.23219 0.96774 0.94471 0.95404 1.62770 1.43473 1.05272 1.18563 1.23143 0.95697 1.02183 0.85785 1.22884 1.00037 0.96437 0.95077 0.90051 1.22026 0.99341 0.86336 0.91042 1.86396 1.91555 1.31992 1.29607 1.68264 1.08125 1.29746 1.32477 0.90234 0.82477 0.76063 0.89091 0.92049 0.84164 0.89058 0.89367 0.94363 0.91339 0.75139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.30 13.65 21.84 0.30 -44.01 16 2 C 0.03 1.50 5.52 85.30 0.47 1.97 16 3 Si 1.18 58.67 25.44 68.60 1.75 60.41 16 4 H -0.29 -14.46 6.90 99.48 0.69 -13.77 16 5 H -0.29 -14.16 6.97 99.48 0.69 -13.47 16 6 H -0.33 -15.67 7.11 99.48 0.71 -14.96 16 7 C -0.47 -26.50 9.81 23.53 0.23 -26.27 16 8 H 0.07 4.32 8.05 -2.91 -0.02 4.29 16 9 C 0.43 23.08 7.25 135.16 0.98 24.06 16 10 N -0.64 -32.60 4.51 -185.02 -0.83 -33.43 16 11 C 0.27 11.56 7.33 84.79 0.62 12.18 16 12 Cl -0.04 -1.28 29.15 -2.72 -0.08 -1.36 16 13 C -0.37 -13.78 9.12 22.84 0.21 -13.57 16 14 C 0.46 18.12 7.71 133.38 1.03 19.14 16 15 N -0.70 -20.09 5.17 -319.89 -1.65 -21.74 16 16 C 0.13 2.79 2.59 45.87 0.12 2.91 16 17 H 0.10 2.01 6.22 -2.39 -0.01 1.99 16 18 C 0.03 0.66 7.32 86.44 0.63 1.30 16 19 N -0.67 -11.83 7.51 -501.89 -3.77 -15.60 16 20 C 0.06 0.93 6.95 86.71 0.60 1.54 16 21 C -0.12 -2.13 3.04 -9.53 -0.03 -2.15 16 22 H 0.08 1.57 7.75 -2.39 -0.02 1.55 16 23 C 0.09 1.42 6.36 71.98 0.46 1.88 16 24 O -0.59 -9.05 13.60 -148.98 -2.03 -11.08 16 25 N -0.66 -31.86 10.39 -191.56 -1.99 -33.85 16 26 H 0.29 15.12 8.72 -92.71 -0.81 14.31 16 27 H 0.16 4.60 6.35 -2.91 -0.02 4.58 16 28 H 0.40 11.35 8.49 -92.71 -0.79 10.56 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.47 7.92 -2.39 -0.02 1.46 16 31 H 0.34 5.60 8.92 -89.69 -0.80 4.80 16 32 H 0.09 1.27 7.94 -2.39 -0.02 1.26 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.84 8.00 -2.39 -0.02 0.82 16 36 H 0.40 2.77 9.12 -74.06 -0.68 2.09 16 Total: -1.00 -64.35 315.28 -4.16 -68.51 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -1.17 Total: 9.16 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 5.32 Total: 22.97 kcal Atomic # 7 Polarization: -140.68 SS G_CDS: -7.95 Total: -148.63 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -2.03 Total: -11.08 kcal Atomic # 14 Polarization: 58.67 SS G_CDS: 1.75 Total: 60.41 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -64.35 -4.16 -68.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170772526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.278 kcal (2) G-P(sol) polarization free energy of solvation -64.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds