Wall clock time and date at job start Tue Mar 31 2020 03:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46794 * 2 1 4 4 C 1.52993 * 109.47060 * 240.00451 * 2 1 3 5 5 N 1.46496 * 109.47165 * 119.99790 * 2 1 3 6 6 N 1.39897 * 125.76546 * 239.99928 * 5 2 1 7 7 C 1.30354 * 109.20596 * 180.02562 * 6 5 2 8 8 C 1.41417 * 108.20520 * 0.02562 * 7 6 5 9 9 C 1.43195 * 126.50048 * 180.02562 * 8 7 6 10 10 N 6.06180 * 98.48340 * 137.80352 * 2 1 3 11 11 C 1.34934 * 125.75992 * 60.00121 * 5 2 1 12 12 N 1.38186 * 126.43972 * 359.73900 * 11 5 2 13 13 S 1.65601 * 119.99645 * 180.02562 * 12 11 5 14 14 O 1.42109 * 106.40126 * 178.54132 * 13 12 11 15 15 O 1.42101 * 106.40271 * 311.45545 * 13 12 11 16 16 C 1.76198 * 107.22304 * 64.99703 * 13 12 11 17 17 H 1.07996 * 119.99529 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00445 * 179.97438 * 16 13 12 19 19 N 1.31523 * 119.99530 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 120.00171 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46882 * 90.00085 * 20 18 16 22 22 H 1.48495 * 109.47393 * 209.99896 * 20 18 16 23 23 H 1.48504 * 109.47351 * 330.00451 * 20 18 16 24 24 H 1.09000 * 109.47180 * 299.99886 * 1 2 3 25 25 H 1.08999 * 109.47053 * 59.99893 * 1 2 3 26 26 H 1.08994 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46956 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47407 * 299.99890 * 3 2 1 29 29 H 1.09000 * 109.47164 * 60.00104 * 3 2 1 30 30 H 1.09004 * 109.47034 * 299.99519 * 4 2 1 31 31 H 1.08993 * 109.47678 * 59.99520 * 4 2 1 32 32 H 1.09001 * 109.47342 * 180.02562 * 4 2 1 33 33 H 1.08001 * 125.89781 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00364 * 359.97438 * 12 11 5 35 35 H 0.96998 * 119.99190 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 7 2.0184 -0.6905 1.1962 6 7 2.8261 -0.1300 2.1914 7 6 3.0679 -1.0287 3.1041 8 6 2.4158 -2.2262 2.7288 9 6 2.4220 -3.4621 3.4519 10 7 2.4243 -4.4417 4.0270 11 6 1.7651 -1.9747 1.5239 12 7 0.9999 -2.8706 0.8018 13 16 0.7927 -4.4173 1.3559 14 8 -0.0587 -5.0674 0.4220 15 8 2.0859 -4.8989 1.6947 16 6 -0.1109 -4.3141 2.8650 17 1 -0.4143 -3.3510 3.2479 18 6 -0.4316 -5.4630 3.5566 19 7 -0.0626 -6.6360 3.0899 20 14 -1.3889 -5.3535 5.1568 21 1 -2.8442 -5.4180 4.8683 22 1 -1.0087 -6.4854 6.0396 23 1 -1.0751 -4.0700 5.8346 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7215 -1.2491 33 1 3.6640 -0.8841 3.9930 34 1 0.5836 -2.5933 -0.0293 35 1 -0.2879 -7.4442 3.5767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192934695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:18 Heat of formation + Delta-G solvation = 33.633001 kcal Electronic energy + Delta-G solvation = -23320.209542 eV Core-core repulsion = 19868.698010 eV Total energy + Delta-G solvation = -3451.511532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29727 -36.99701 -35.96243 -34.94399 -34.57095 -34.11595 -33.03533 -30.24062 -28.64882 -27.63030 -27.56000 -26.18311 -22.76196 -21.92292 -19.97806 -19.22995 -18.26191 -17.16063 -16.53246 -16.18618 -15.45007 -15.31081 -15.02311 -14.25482 -14.07496 -13.92193 -13.82657 -13.42609 -12.59485 -12.45057 -12.39372 -12.18936 -11.98348 -11.95442 -11.86368 -11.49233 -11.43525 -11.34231 -11.28658 -11.17890 -11.01499 -10.94385 -10.59173 -10.48306 -10.33958 -9.81990 -9.18734 -8.98038 -8.77769 -7.66686 -6.72497 -5.33470 1.70002 2.05879 2.50276 2.71472 3.09255 3.16739 3.23463 3.93564 4.04942 4.19362 4.36272 4.56869 4.66356 4.67914 4.93131 4.97653 5.20735 5.27583 5.30478 5.40054 5.41644 5.46573 5.55919 5.62442 5.65117 5.79533 5.88200 5.99778 6.02637 6.15380 6.39877 6.73851 6.87678 7.30237 7.43612 7.88375 7.92222 8.87668 9.16097 10.23065 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.006650 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.006308 B = 4209.393489 C = 4542.804036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.179 3.821 3 C -0.136 4.136 4 C -0.170 4.170 5 N -0.374 5.374 6 N -0.300 5.300 7 C 0.116 3.884 8 C -0.208 4.208 9 C 0.257 3.743 10 N -0.369 5.369 11 C 0.409 3.591 12 N -1.037 6.037 13 S 2.683 3.317 14 O -0.987 6.987 15 O -0.967 6.967 16 C -1.007 5.007 17 H 0.105 0.895 18 C 0.149 3.851 19 N -0.835 5.835 20 Si 0.921 3.079 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.261 1.261 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.194 0.806 34 H 0.414 0.586 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 15.574 -5.812 16.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.096 3.904 3 C -0.194 4.194 4 C -0.228 4.228 5 N -0.162 5.162 6 N -0.120 5.120 7 C -0.074 4.074 8 C -0.227 4.227 9 C -0.059 4.059 10 N -0.047 5.047 11 C 0.178 3.822 12 N -0.779 5.779 13 S 2.784 3.216 14 O -0.978 6.978 15 O -0.956 6.956 16 C -1.142 5.142 17 H 0.123 0.877 18 C -0.071 4.071 19 N -0.464 5.464 20 Si 0.745 3.255 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.185 1.185 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.211 0.789 34 H 0.250 0.750 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.320 14.265 -5.814 15.578 hybrid contribution -1.277 -0.132 0.638 1.434 sum 1.043 14.133 -5.177 15.087 Atomic orbital electron populations 1.22393 0.92906 1.03641 1.03928 1.20757 0.94315 0.93973 0.81334 1.21836 1.02563 0.92192 1.02794 1.22385 1.02963 1.01080 0.96370 1.48514 1.41669 1.06307 1.19707 1.77036 1.14172 1.21360 0.99391 1.23667 0.97149 0.88540 0.98024 1.15463 1.16626 0.93039 0.97584 1.23596 0.96019 0.91386 0.94890 1.80987 1.06216 1.07187 1.10297 1.17664 0.91021 0.82984 0.90555 1.54483 1.58749 1.31498 1.33202 1.01837 0.75064 0.68576 0.76089 1.93412 1.68499 1.69473 1.66369 1.93510 1.42488 1.75069 1.84514 1.30095 1.54526 1.00907 1.28623 0.87679 1.24518 0.91521 0.93097 0.97960 1.69849 1.38506 0.98968 1.39076 0.86142 0.79287 0.79289 0.80810 1.19460 1.19863 1.18472 0.90904 0.89904 0.91550 0.91106 0.91124 0.91058 0.91804 0.89846 0.90973 0.78899 0.75042 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 8.46 37.16 0.31 -1.39 16 2 C 0.18 1.97 1.06 -131.82 -0.14 1.83 16 3 C -0.14 -1.21 7.96 37.16 0.30 -0.91 16 4 C -0.17 -1.68 8.46 37.15 0.31 -1.36 16 5 N -0.37 -5.57 3.46 -47.31 -0.16 -5.73 16 6 N -0.30 -4.46 11.53 30.87 0.36 -4.10 16 7 C 0.12 1.76 11.99 -16.97 -0.20 1.56 16 8 C -0.21 -4.05 5.86 -106.40 -0.62 -4.67 16 9 C 0.26 6.09 10.06 -22.48 -0.23 5.86 16 10 N -0.37 -9.77 15.76 41.84 0.66 -9.11 16 11 C 0.41 7.47 6.95 -153.56 -1.07 6.40 16 12 N -1.04 -19.86 5.13 31.43 0.16 -19.70 16 13 S 2.68 68.82 4.56 -107.50 -0.49 68.33 16 14 O -0.99 -27.70 18.02 -57.17 -1.03 -28.73 16 15 O -0.97 -27.22 13.42 -57.17 -0.77 -27.98 16 16 C -1.01 -26.99 6.62 30.60 0.20 -26.79 16 17 H 0.11 2.63 7.81 -52.49 -0.41 2.22 16 18 C 0.15 4.13 5.01 -17.82 -0.09 4.04 16 19 N -0.84 -24.46 13.19 55.43 0.73 -23.73 16 20 Si 0.92 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.74 5.84 -51.93 -0.30 0.44 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.71 5.88 -51.93 -0.31 0.40 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.19 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.41 6.51 5.01 -34.47 -0.17 6.34 16 35 H 0.29 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 306.28 15.07 4.62 4.62 Total: -1.00 -36.09 306.28 -5.88 -41.97 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.71 Total: 3.23 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.22 Total: -15.43 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 1.74 Total: -62.36 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -1.80 Total: -56.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 68.82 SS G_CDS: -0.49 Total: 68.33 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.09 -5.88 -41.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.603 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds