Wall clock time and date at job start Tue Mar 31 2020 03:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46794 * 2 1 4 4 C 1.52993 * 109.47060 * 240.00451 * 2 1 3 5 5 N 1.46496 * 109.47165 * 119.99790 * 2 1 3 6 6 N 1.39897 * 125.76546 * 239.99928 * 5 2 1 7 7 C 1.30354 * 109.20596 * 180.02562 * 6 5 2 8 8 C 1.41417 * 108.20520 * 0.02562 * 7 6 5 9 9 C 1.43195 * 126.50048 * 180.02562 * 8 7 6 10 10 N 6.06180 * 98.48340 * 137.80352 * 2 1 3 11 11 C 1.34934 * 125.75992 * 60.00121 * 5 2 1 12 12 N 1.38186 * 126.43972 * 359.73900 * 11 5 2 13 13 S 1.65601 * 119.99645 * 180.02562 * 12 11 5 14 14 O 1.42109 * 106.40126 * 178.54132 * 13 12 11 15 15 O 1.42101 * 106.40271 * 311.45545 * 13 12 11 16 16 C 1.76198 * 107.22304 * 64.99703 * 13 12 11 17 17 H 1.07996 * 119.99529 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00445 * 179.97438 * 16 13 12 19 19 N 1.31523 * 119.99530 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 120.00171 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46882 * 90.00085 * 20 18 16 22 22 H 1.48495 * 109.47393 * 209.99896 * 20 18 16 23 23 H 1.48504 * 109.47351 * 330.00451 * 20 18 16 24 24 H 1.09000 * 109.47180 * 299.99886 * 1 2 3 25 25 H 1.08999 * 109.47053 * 59.99893 * 1 2 3 26 26 H 1.08994 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46956 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47407 * 299.99890 * 3 2 1 29 29 H 1.09000 * 109.47164 * 60.00104 * 3 2 1 30 30 H 1.09004 * 109.47034 * 299.99519 * 4 2 1 31 31 H 1.08993 * 109.47678 * 59.99520 * 4 2 1 32 32 H 1.09001 * 109.47342 * 180.02562 * 4 2 1 33 33 H 1.08001 * 125.89781 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00364 * 359.97438 * 12 11 5 35 35 H 0.96998 * 119.99190 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 7 2.0184 -0.6905 1.1962 6 7 2.8261 -0.1300 2.1914 7 6 3.0679 -1.0287 3.1041 8 6 2.4158 -2.2262 2.7288 9 6 2.4220 -3.4621 3.4519 10 7 2.4243 -4.4417 4.0270 11 6 1.7651 -1.9747 1.5239 12 7 0.9999 -2.8706 0.8018 13 16 0.7927 -4.4173 1.3559 14 8 -0.0587 -5.0674 0.4220 15 8 2.0859 -4.8989 1.6947 16 6 -0.1109 -4.3141 2.8650 17 1 -0.4143 -3.3510 3.2479 18 6 -0.4316 -5.4630 3.5566 19 7 -0.0626 -6.6360 3.0899 20 14 -1.3889 -5.3535 5.1568 21 1 -2.8442 -5.4180 4.8683 22 1 -1.0087 -6.4854 6.0396 23 1 -1.0751 -4.0700 5.8346 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7215 -1.2491 33 1 3.6640 -0.8841 3.9930 34 1 0.5836 -2.5933 -0.0293 35 1 -0.2879 -7.4442 3.5767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192934695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:17 Heat of formation + Delta-G solvation = 6.262995 kcal Electronic energy + Delta-G solvation = -23321.396395 eV Core-core repulsion = 19868.698010 eV Total energy + Delta-G solvation = -3452.698385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.58043 -38.27610 -37.67429 -36.72234 -36.36104 -36.14641 -35.10200 -31.45790 -30.09043 -28.41513 -28.36543 -28.22104 -24.07436 -23.22569 -21.32893 -21.13805 -20.00588 -18.66787 -18.26047 -17.73408 -17.05408 -16.65899 -16.41087 -16.06979 -15.94218 -15.00670 -14.91487 -14.66960 -14.16079 -13.81946 -13.68592 -13.55507 -13.38604 -13.26223 -13.17474 -13.06521 -12.96170 -12.87170 -12.75010 -12.70237 -12.60370 -12.41571 -12.17694 -12.14079 -11.98237 -11.48788 -11.20359 -11.01848 -10.04200 -9.19244 -8.78250 -7.46350 -0.19598 0.63337 1.22672 1.28553 1.33083 1.39233 1.43261 2.13846 2.34033 2.46274 2.61978 3.15657 3.33807 3.43864 3.65970 3.76204 3.78971 3.89562 4.04871 4.06723 4.53310 4.54445 4.66477 4.73385 4.75072 4.80105 4.88745 4.92896 5.04630 5.23341 5.23993 5.31444 5.50262 5.61591 5.83371 6.08376 6.62877 6.78450 7.38097 8.18423 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.006650 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.006308 B = 4209.393489 C = 4542.804036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.163 3.837 3 C -0.130 4.130 4 C -0.171 4.171 5 N -0.360 5.360 6 N -0.288 5.288 7 C 0.129 3.871 8 C -0.246 4.246 9 C 0.274 3.726 10 N -0.432 5.432 11 C 0.399 3.601 12 N -1.024 6.024 13 S 2.699 3.301 14 O -1.020 7.020 15 O -0.999 6.999 16 C -1.016 5.016 17 H 0.116 0.884 18 C 0.100 3.900 19 N -0.880 5.880 20 Si 0.971 3.029 21 H -0.249 1.249 22 H -0.269 1.269 23 H -0.253 1.253 24 H 0.068 0.932 25 H 0.119 0.881 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.231 0.769 34 H 0.430 0.570 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 18.720 -6.289 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.082 3.918 3 C -0.187 4.187 4 C -0.229 4.229 5 N -0.146 5.146 6 N -0.106 5.106 7 C -0.060 4.060 8 C -0.265 4.265 9 C -0.041 4.041 10 N -0.111 5.111 11 C 0.166 3.834 12 N -0.772 5.772 13 S 2.801 3.199 14 O -1.010 7.010 15 O -0.987 6.987 16 C -1.150 5.150 17 H 0.134 0.866 18 C -0.116 4.116 19 N -0.511 5.511 20 Si 0.791 3.209 21 H -0.173 1.173 22 H -0.194 1.194 23 H -0.177 1.177 24 H 0.087 0.913 25 H 0.138 0.862 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.139 0.861 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.269 0.731 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.822 17.455 -6.333 18.658 hybrid contribution -1.070 -0.937 0.663 1.569 sum 0.753 16.518 -5.670 17.481 Atomic orbital electron populations 1.22459 0.91909 1.03002 1.05588 1.21342 0.95218 0.95107 0.80132 1.21848 1.02178 0.90497 1.04223 1.22458 1.02739 1.00453 0.97286 1.49029 1.40380 1.04887 1.20342 1.77058 1.13536 1.20904 0.99114 1.24181 0.96411 0.86476 0.98979 1.15830 1.19091 0.93007 0.98585 1.24248 0.94309 0.91662 0.93910 1.80976 1.08629 1.08970 1.12537 1.17652 0.91101 0.84240 0.90371 1.53617 1.59371 1.30248 1.33973 1.01007 0.74100 0.69317 0.75503 1.93361 1.69142 1.71495 1.67007 1.93472 1.43599 1.76799 1.84856 1.30364 1.54152 1.01355 1.29138 0.86612 1.25511 0.92184 0.92708 1.01188 1.69931 1.40361 0.99909 1.40865 0.85388 0.78977 0.79642 0.76910 1.17284 1.19405 1.17686 0.91335 0.86250 0.93239 0.91671 0.87751 0.91600 0.93485 0.86147 0.91442 0.75280 0.73095 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 8.46 71.98 0.61 -2.28 16 2 C 0.16 3.09 1.06 3.60 0.00 3.10 16 3 C -0.13 -1.80 7.96 71.98 0.57 -1.23 16 4 C -0.17 -2.89 8.46 71.98 0.61 -2.28 16 5 N -0.36 -9.91 3.46 -303.60 -1.05 -10.96 16 6 N -0.29 -7.77 11.53 -56.24 -0.65 -8.42 16 7 C 0.13 3.66 11.99 85.70 1.03 4.69 16 8 C -0.25 -9.41 5.86 -21.01 -0.12 -9.53 16 9 C 0.27 13.13 10.06 88.33 0.89 14.02 16 10 N -0.43 -23.50 15.76 19.00 0.30 -23.20 16 11 C 0.40 14.18 6.95 132.59 0.92 15.10 16 12 N -1.02 -39.03 5.13 -54.46 -0.28 -39.31 16 13 S 2.70 141.24 4.56 -56.49 -0.26 140.98 16 14 O -1.02 -58.59 18.02 -128.00 -2.31 -60.90 16 15 O -1.00 -57.98 13.42 -128.00 -1.72 -59.70 16 16 C -1.02 -54.99 6.62 67.73 0.45 -54.55 16 17 H 0.12 5.80 7.81 -2.91 -0.02 5.78 16 18 C 0.10 5.57 5.01 84.65 0.42 5.99 16 19 N -0.88 -52.87 13.19 21.45 0.28 -52.59 16 20 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 21 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.01 5.84 -2.39 -0.01 0.99 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.95 5.88 -2.39 -0.01 0.94 16 31 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.23 4.49 8.06 -2.91 -0.02 4.47 16 34 H 0.43 13.30 5.01 -96.75 -0.48 12.82 16 35 H 0.30 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -80.83 306.28 2.39 -78.44 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.66 Total: 17.14 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 5.38 Total: -26.96 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -1.39 Total: -134.48 kcal Atomic # 8 Polarization: -116.57 SS G_CDS: -4.02 Total: -120.59 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 141.24 SS G_CDS: -0.26 Total: 140.98 kcal Total: -80.83 2.39 -78.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.700 kcal (2) G-P(sol) polarization free energy of solvation -80.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds