Wall clock time and date at job start Tue Mar 31 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00498 * 2 1 4 4 H 1.48501 * 109.47413 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46918 * 299.99824 * 3 2 1 6 6 H 1.48504 * 109.47481 * 59.99566 * 3 2 1 7 7 C 1.37882 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99933 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00074 * 0.02562 * 7 2 1 10 10 O 1.42093 * 106.40100 * 66.46134 * 9 7 2 11 11 O 1.42101 * 106.39955 * 293.53724 * 9 7 2 12 12 N 1.65603 * 107.21557 * 180.02562 * 9 7 2 13 13 C 1.47148 * 120.97820 * 270.01892 * 12 9 7 14 14 C 1.53300 * 108.38206 * 129.44814 * 13 12 9 15 15 O 1.42955 * 109.22459 * 52.30018 * 14 13 12 16 16 C 1.42973 * 114.20296 * 297.43733 * 15 14 13 17 17 H 1.09005 * 109.48325 * 302.62216 * 16 15 14 18 18 C 1.50692 * 109.54930 * 182.46310 * 16 15 14 19 19 C 1.38226 * 119.62240 * 4.96929 * 18 16 15 20 20 C 1.38626 * 119.16302 * 179.75292 * 19 18 16 21 21 C 1.38667 * 118.42225 * 0.50914 * 20 19 18 22 22 C 1.38183 * 119.16270 * 359.73139 * 21 20 19 23 23 N 1.31857 * 119.61913 * 185.23947 * 18 16 15 24 24 C 1.47148 * 120.98254 * 90.00115 * 12 9 7 25 25 H 0.96995 * 119.99172 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.68553 * 249.16595 * 13 12 9 27 27 H 1.09004 * 109.68438 * 9.72537 * 13 12 9 28 28 H 1.09005 * 109.51071 * 172.22485 * 14 13 12 29 29 H 1.08999 * 109.50922 * 292.37543 * 14 13 12 30 30 H 1.08003 * 120.41422 * 359.97438 * 19 18 16 31 31 H 1.08002 * 120.78855 * 180.21364 * 20 19 18 32 32 H 1.08003 * 120.41910 * 179.75422 * 21 20 19 33 33 H 1.08002 * 119.62097 * 180.02562 * 22 21 20 34 34 H 1.09002 * 109.68336 * 350.27765 * 24 12 9 35 35 H 1.08999 * 109.68144 * 110.79435 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8906 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1234 -2.7201 0.0005 10 8 0.4518 -2.7956 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9355 0.0019 13 6 2.7639 -4.4917 -1.2590 14 6 4.2956 -4.4929 -1.1962 15 8 4.7170 -5.1445 0.0045 16 6 4.2936 -4.4930 1.2046 17 1 4.6594 -3.4662 1.2093 18 6 4.8427 -5.2296 2.3990 19 6 5.7080 -6.2906 2.2088 20 6 6.2115 -6.9582 3.3144 21 6 5.8158 -6.5387 4.5755 22 6 4.9433 -5.4731 4.6876 23 7 4.4881 -4.8580 3.6134 24 6 2.7617 -4.4909 1.2641 25 1 -0.4849 0.8401 -0.0004 26 1 2.4010 -5.5116 -1.3861 27 1 2.4313 -3.8763 -2.0950 28 1 4.6950 -5.0259 -2.0591 29 1 4.6610 -3.4660 -1.2005 30 1 5.9910 -6.5933 1.2114 31 1 6.8921 -7.7885 3.1963 32 1 6.1852 -7.0383 5.4589 33 1 4.6306 -5.1399 5.6662 34 1 2.4276 -3.8750 2.0991 35 1 2.3979 -5.5105 1.3914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:55 Heat of formation + Delta-G solvation = -89.151696 kcal Electronic energy + Delta-G solvation = -22480.763609 eV Core-core repulsion = 18991.634981 eV Total energy + Delta-G solvation = -3489.128627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38901 -38.71864 -35.32687 -34.32982 -33.97005 -33.06721 -33.01060 -32.19117 -29.76860 -26.62931 -26.13989 -24.56410 -23.31029 -22.26469 -20.76705 -18.65736 -17.82420 -16.91718 -16.57950 -16.34084 -15.65924 -15.37120 -15.24631 -15.11317 -14.78278 -14.41386 -14.10483 -13.68620 -13.35570 -13.32316 -13.16048 -12.51552 -12.03741 -11.85381 -11.51636 -11.38820 -11.24154 -11.21033 -10.85550 -10.59271 -10.31778 -10.26308 -10.15525 -9.98208 -9.84038 -9.36176 -9.26506 -9.07685 -8.80622 -8.16483 -6.70712 -5.33257 1.06060 1.25906 2.19812 3.05232 3.13440 3.20473 3.48256 3.76528 4.03514 4.41384 4.60295 4.63469 4.71993 4.80126 5.04661 5.11863 5.20545 5.30699 5.41293 5.49463 5.51374 5.64515 5.76873 5.82736 5.86690 5.97122 6.05902 6.14979 6.16630 6.30337 6.33396 6.64721 6.71967 7.25264 7.31284 7.47271 7.95735 7.98758 8.88009 10.23064 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.019171 B = 0.005090 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.175745 B = 5499.214226 C = 5933.292723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.270 1.270 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.713 3.287 10 O -1.002 7.002 11 O -0.999 6.999 12 N -1.015 6.015 13 C 0.091 3.909 14 C 0.052 3.948 15 O -0.380 6.380 16 C 0.128 3.872 17 H 0.088 0.912 18 C 0.139 3.861 19 C -0.148 4.148 20 C -0.080 4.080 21 C -0.180 4.180 22 C 0.103 3.897 23 N -0.473 5.473 24 C 0.115 3.885 25 H 0.291 0.709 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.158 0.842 34 H 0.109 0.891 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.153 -11.076 3.705 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.195 1.195 7 C -1.152 5.152 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.992 6.992 11 O -0.990 6.990 12 N -0.850 5.850 13 C -0.036 4.036 14 C -0.026 4.026 15 O -0.299 6.299 16 C 0.068 3.932 17 H 0.106 0.894 18 C 0.001 3.999 19 C -0.168 4.168 20 C -0.106 4.106 21 C -0.200 4.200 22 C -0.055 4.055 23 N -0.183 5.183 24 C -0.012 4.012 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.175 0.825 34 H 0.127 0.873 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.537 -10.620 3.780 16.130 hybrid contribution 1.457 0.673 -0.061 1.606 sum 12.994 -9.947 3.719 16.782 Atomic orbital electron populations 1.69905 1.06784 1.30669 1.40108 1.24752 0.94461 1.00801 0.88457 0.86134 0.80439 0.80407 0.78597 1.18631 1.19593 1.19534 1.30615 1.06052 1.11724 1.66826 0.88021 1.00645 0.72144 0.72926 0.72874 1.93353 1.72591 1.87545 1.45720 1.93364 1.72547 1.87448 1.45603 1.58451 1.62242 1.54869 1.09455 1.21894 0.94002 1.00225 0.87470 1.23023 0.94673 0.98341 0.86586 1.87741 1.76181 1.52567 1.13389 1.20948 0.94722 0.95393 0.82152 0.89405 1.20761 0.93749 0.93457 0.91929 1.21952 0.97972 0.96306 1.00560 1.21595 0.97898 0.98694 0.92442 1.22140 1.00258 0.99225 0.98367 1.22738 0.93440 0.92172 0.97132 1.67312 1.23303 1.29416 0.98248 1.21678 0.91552 1.00423 0.87522 0.89899 0.91526 0.88093 0.87872 0.92047 0.83797 0.84956 0.84951 0.82502 0.87276 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.90 13.19 55.43 0.73 -24.17 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -1.02 -28.03 9.75 30.60 0.30 -27.73 16 8 H 0.10 2.56 7.81 -52.48 -0.41 2.15 16 9 S 2.71 72.96 4.98 -107.50 -0.54 72.43 16 10 O -1.00 -29.14 16.82 -57.17 -0.96 -30.10 16 11 O -1.00 -29.69 16.82 -57.17 -0.96 -30.65 16 12 N -1.02 -21.20 3.34 -113.06 -0.38 -21.58 16 13 C 0.09 1.53 6.57 -3.53 -0.02 1.51 16 14 C 0.05 0.72 6.99 37.31 0.26 0.98 16 15 O -0.38 -5.66 8.86 -35.23 -0.31 -5.97 16 16 C 0.13 2.10 3.27 -27.73 -0.09 2.00 16 17 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 18 C 0.14 2.09 6.17 -82.59 -0.51 1.58 16 19 C -0.15 -1.83 9.41 -39.44 -0.37 -2.20 16 20 C -0.08 -0.80 10.18 -39.28 -0.40 -1.20 16 21 C -0.18 -1.73 10.11 -39.44 -0.40 -2.13 16 22 C 0.10 1.21 11.18 -17.55 -0.20 1.01 16 23 N -0.47 -7.25 10.03 -9.47 -0.09 -7.35 16 24 C 0.12 2.19 5.65 -3.53 -0.02 2.17 16 25 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.10 1.75 7.25 -51.93 -0.38 1.37 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.14 1.65 7.02 -52.48 -0.37 1.28 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.11 2.26 7.25 -51.93 -0.38 1.89 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -35.80 312.15 -8.43 -44.22 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.05 Total: 3.28 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -1.55 Total: -20.38 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.26 Total: -53.10 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: -2.24 Total: -66.73 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 72.96 SS G_CDS: -0.54 Total: 72.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.80 -8.43 -44.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.930 kcal (2) G-P(sol) polarization free energy of solvation -35.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds