Wall clock time and date at job start Tue Mar 31 2020 03:21:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86801 * 120.00029 * 2 1
4 4 H 1.48496 * 109.47142 * 270.00287 * 3 2 1
5 5 H 1.48505 * 109.46946 * 30.00249 * 3 2 1
6 6 H 1.48501 * 109.47091 * 150.00126 * 3 2 1
7 7 C 1.37876 * 120.00243 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99852 * 0.02562 * 7 2 1
9 9 S 1.76201 * 120.00224 * 179.97438 * 7 2 1
10 10 O 1.42092 * 106.40186 * 66.46000 * 9 7 2
11 11 O 1.42103 * 106.40024 * 293.54214 * 9 7 2
12 12 N 1.65604 * 107.21967 * 180.02562 * 9 7 2
13 13 C 1.46495 * 120.00014 * 64.99721 * 12 9 7
14 14 C 1.52998 * 109.47000 * 164.99966 * 13 12 9
15 15 N 1.46508 * 109.47135 * 179.97438 * 14 13 12
16 16 C 1.34780 * 119.99852 * 179.97438 * 15 14 13
17 17 O 1.21557 * 120.00061 * 0.02562 * 16 15 14
18 18 C 1.47845 * 119.99555 * 180.02562 * 16 15 14
19 19 C 1.39575 * 120.13807 * 180.02562 * 18 16 15
20 20 C 1.37966 * 119.85100 * 179.97438 * 19 18 16
21 21 C 1.38359 * 120.14194 * 359.97438 * 20 19 18
22 22 C 1.38356 * 120.29572 * 0.04433 * 21 20 19
23 23 C 1.37965 * 120.14354 * 359.95888 * 22 21 20
24 24 H 0.97001 * 120.00003 * 359.97438 * 1 2 3
25 25 H 0.96996 * 119.99679 * 245.00377 * 12 9 7
26 26 H 1.09002 * 109.47170 * 45.00204 * 13 12 9
27 27 H 1.08999 * 109.47764 * 285.00352 * 13 12 9
28 28 H 1.08996 * 109.46951 * 60.00588 * 14 13 12
29 29 H 1.08996 * 109.47668 * 300.00178 * 14 13 12
30 30 H 0.97002 * 119.99932 * 0.02562 * 15 14 13
31 31 H 1.07998 * 120.08057 * 359.70005 * 19 18 16
32 32 H 1.08000 * 119.93085 * 179.97438 * 20 19 18
33 33 H 1.08003 * 119.85292 * 180.02562 * 21 20 19
34 34 H 1.08001 * 119.93259 * 179.97438 * 22 21 20
35 35 H 1.08003 * 120.07139 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0014
9 16 3.7665 -1.1940 -0.0012
10 8 4.1683 -0.6499 1.2484
11 8 4.1673 -0.6492 -1.2510
12 7 4.2568 -2.7758 -0.0025
13 6 3.9610 -3.6334 -1.1527
14 6 4.8199 -4.8975 -1.0806
15 7 4.5237 -5.7555 -2.2306
16 6 5.1662 -6.9312 -2.3775
17 8 5.9912 -7.2798 -1.5556
18 6 4.8677 -7.7967 -3.5383
19 6 5.5309 -9.0150 -3.6931
20 6 5.2473 -9.8182 -4.7784
21 6 4.3074 -9.4187 -5.7117
22 6 3.6466 -8.2120 -5.5644
23 6 3.9209 -7.3994 -4.4838
24 1 -0.4850 0.8401 0.0004
25 1 4.7397 -3.1344 0.7585
26 1 4.1835 -3.0951 -2.0740
27 1 2.9066 -3.9093 -1.1388
28 1 4.5974 -5.4359 -0.1593
29 1 5.8743 -4.6218 -1.0946
30 1 3.8656 -5.4772 -2.8866
31 1 6.2677 -9.3262 -2.9674
32 1 5.7601 -10.7610 -4.8996
33 1 4.0887 -10.0513 -6.5593
34 1 2.9143 -7.9057 -6.2967
35 1 3.4042 -6.4579 -4.3697
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192987998.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:21:46
Heat of formation + Delta-G solvation = -91.489659 kcal
Electronic energy + Delta-G solvation = -20870.177331 eV
Core-core repulsion = 17380.947322 eV
Total energy + Delta-G solvation = -3489.230009 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 298.082 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.36099 -38.51092 -36.18804 -35.60877 -34.48293 -33.82859 -33.06611 -31.56340
-31.23947 -28.08367 -26.45210 -24.16528 -22.94987 -22.24694 -20.67993 -19.18954
-18.38253 -17.60121 -16.75215 -16.54178 -15.99503 -15.72338 -15.47587 -15.11872
-14.90891 -14.61104 -14.30638 -13.92388 -13.74997 -13.51861 -13.34402 -12.96834
-12.83157 -12.07580 -11.96414 -11.91125 -11.45637 -11.41658 -11.30039 -10.84355
-10.67431 -10.54279 -10.15106 -9.87450 -9.41773 -9.33723 -9.31723 -9.24733
-9.11754 -8.67472 -6.84393 -5.39101 0.55850 1.03223 1.96708 2.67417
2.98494 3.06115 3.15379 3.24901 3.60540 3.92342 4.27099 4.46702
4.48384 4.55762 4.60403 4.80133 4.85947 5.03561 5.14105 5.16039
5.31483 5.45057 5.55379 5.64214 5.87478 5.96872 5.98126 6.06907
6.08711 6.10452 6.22977 6.48499 6.54222 7.31731 7.43050 7.62179
8.03167 8.15421 8.66426 10.27769
Molecular weight = 298.08amu
Principal moments of inertia in cm(-1)
A = 0.029171 B = 0.002999 C = 0.002824
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 959.611179 B = 9332.657512 C = 9911.096090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.823 5.823
2 C 0.153 3.847
3 Si 0.803 3.197
4 H -0.246 1.246
5 H -0.255 1.255
6 H -0.220 1.220
7 C -1.016 5.016
8 H 0.121 0.879
9 S 2.678 3.322
10 O -1.005 7.005
11 O -1.010 7.010
12 N -1.122 6.122
13 C 0.115 3.885
14 C 0.112 3.888
15 N -0.721 5.721
16 C 0.558 3.442
17 O -0.538 6.538
18 C -0.133 4.133
19 C -0.061 4.061
20 C -0.130 4.130
21 C -0.097 4.097
22 C -0.127 4.127
23 C -0.086 4.086
24 H 0.281 0.719
25 H 0.408 0.592
26 H 0.083 0.917
27 H 0.071 0.929
28 H 0.077 0.923
29 H 0.077 0.923
30 H 0.403 0.597
31 H 0.136 0.864
32 H 0.129 0.871
33 H 0.126 0.874
34 H 0.130 0.870
35 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.966 -16.757 -10.588 20.700
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.452 5.452
2 C -0.067 4.067
3 Si 0.623 3.377
4 H -0.170 1.170
5 H -0.179 1.179
6 H -0.142 1.142
7 C -1.150 5.150
8 H 0.139 0.861
9 S 2.779 3.221
10 O -0.996 6.996
11 O -1.000 7.000
12 N -0.878 5.878
13 C -0.013 4.013
14 C -0.013 4.013
15 N -0.374 5.374
16 C 0.345 3.655
17 O -0.416 6.416
18 C -0.136 4.136
19 C -0.080 4.080
20 C -0.148 4.148
21 C -0.115 4.115
22 C -0.145 4.145
23 C -0.104 4.104
24 H 0.091 0.909
25 H 0.240 0.760
26 H 0.101 0.899
27 H 0.090 0.910
28 H 0.095 0.905
29 H 0.095 0.905
30 H 0.239 0.761
31 H 0.154 0.846
32 H 0.147 0.853
33 H 0.144 0.856
34 H 0.148 0.852
35 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 6.876 -16.080 -10.138 20.214
hybrid contribution -0.730 0.412 -0.014 0.838
sum 6.146 -15.668 -10.152 19.655
Atomic orbital electron populations
1.69983 1.06613 1.29108 1.39495 1.24428 0.94793 0.98860 0.88587
0.87842 0.83588 0.84461 0.81818 1.17013 1.17936 1.14183 1.30434
1.15562 1.02164 1.66877 0.86091 1.01309 0.77287 0.70171 0.73284
1.93485 1.85510 1.75571 1.45009 1.93407 1.85072 1.75889 1.45629
1.55410 1.74481 1.31482 1.26416 1.21192 0.99167 0.90726 0.90206
1.21602 1.00483 0.90368 0.88875 1.45787 1.43614 1.20195 1.27774
1.18262 0.80889 0.80966 0.85357 1.90779 1.33768 1.73124 1.43901
1.19973 1.00437 0.96754 0.96463 1.21310 0.97410 0.92202 0.97063
1.21180 0.98749 1.00190 0.94657 1.21400 0.95277 0.96191 0.98618
1.21153 1.00454 0.94761 0.98142 1.21404 0.95912 0.99554 0.93572
0.90862 0.76030 0.89865 0.91044 0.90505 0.90476 0.76083 0.84629
0.85329 0.85585 0.85220 0.85262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -23.26 13.96 55.43 0.77 -22.49 16
2 C 0.15 4.29 5.47 -17.82 -0.10 4.19 16
3 Si 0.80 20.19 26.54 -169.99 -4.51 15.68 16
4 H -0.25 -6.04 7.11 56.52 0.40 -5.64 16
5 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16
6 H -0.22 -5.63 5.61 56.52 0.32 -5.31 16
7 C -1.02 -27.28 10.26 30.60 0.31 -26.96 16
8 H 0.12 3.25 8.06 -52.49 -0.42 2.83 16
9 S 2.68 63.90 4.24 -107.50 -0.46 63.44 16
10 O -1.01 -26.23 16.02 -57.17 -0.92 -27.15 16
11 O -1.01 -25.77 16.30 -57.17 -0.93 -26.70 16
12 N -1.12 -19.92 6.00 -10.62 -0.06 -19.99 16
13 C 0.11 1.70 6.34 -4.05 -0.03 1.68 16
14 C 0.11 1.43 5.82 -4.04 -0.02 1.40 16
15 N -0.72 -8.21 5.51 -61.25 -0.34 -8.55 16
16 C 0.56 7.20 7.77 -12.33 -0.10 7.11 16
17 O -0.54 -8.74 16.35 5.32 0.09 -8.65 16
18 C -0.13 -1.41 5.87 -104.97 -0.62 -2.03 16
19 C -0.06 -0.59 9.60 -39.18 -0.38 -0.97 16
20 C -0.13 -0.98 10.03 -39.64 -0.40 -1.37 16
21 C -0.10 -0.65 10.04 -39.49 -0.40 -1.05 16
22 C -0.13 -0.91 10.03 -39.64 -0.40 -1.31 16
23 C -0.09 -0.72 9.54 -39.19 -0.37 -1.09 16
24 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16
25 H 0.41 6.20 8.65 -34.47 -0.30 5.90 16
26 H 0.08 1.24 7.75 -51.93 -0.40 0.84 16
27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
30 H 0.40 3.56 6.51 -40.82 -0.27 3.29 16
31 H 0.14 1.33 7.65 -52.49 -0.40 0.93 16
32 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16
33 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16
34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16
35 H 0.13 0.83 6.41 -52.48 -0.34 0.50 16
LS Contribution 317.43 15.07 4.78 4.78
Total: -1.00 -35.06 317.43 -7.94 -43.00
By element:
Atomic # 1 Polarization: 10.90 SS G_CDS: -3.88 Total: 7.02 kcal
Atomic # 6 Polarization: -17.92 SS G_CDS: -2.49 Total: -20.41 kcal
Atomic # 7 Polarization: -51.39 SS G_CDS: 0.37 Total: -51.02 kcal
Atomic # 8 Polarization: -60.74 SS G_CDS: -1.76 Total: -62.50 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -4.51 Total: 15.68 kcal
Atomic # 16 Polarization: 63.90 SS G_CDS: -0.46 Total: 63.44 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -35.06 -7.94 -43.00 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192987998.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.487 kcal
(2) G-P(sol) polarization free energy of solvation -35.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.548 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds