Wall clock time and date at job start Tue Mar 31 2020 03:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21292 * 120.00040 * 2 1 4 4 N 1.34783 * 120.00257 * 179.97438 * 2 1 3 5 5 C 1.39926 * 119.99921 * 185.27161 * 4 2 1 6 6 C 1.38895 * 120.06745 * 33.29235 * 5 4 2 7 7 C 1.38096 * 119.92562 * 179.97438 * 6 5 4 8 8 C 1.38307 * 120.06860 * 0.26019 * 7 6 5 9 9 C 1.38254 * 120.14320 * 359.48677 * 8 7 6 10 10 C 1.50699 * 119.96681 * 180.25879 * 9 8 7 11 11 N 1.46503 * 109.46842 * 270.25261 * 10 9 8 12 12 S 1.65596 * 119.99854 * 164.99833 * 11 10 9 13 13 O 1.42104 * 106.40335 * 178.53672 * 12 11 10 14 14 O 1.42095 * 106.40327 * 311.45795 * 12 11 10 15 15 C 1.76202 * 107.22014 * 64.99984 * 12 11 10 16 16 H 1.08002 * 119.99810 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00394 * 179.97438 * 15 12 11 18 18 N 1.31508 * 120.00100 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 119.99723 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.47262 * 89.99697 * 19 17 15 21 21 H 1.48498 * 109.46957 * 210.00111 * 19 17 15 22 22 H 1.48507 * 109.47072 * 329.99829 * 19 17 15 23 23 C 1.38140 * 120.06771 * 0.50660 * 9 8 7 24 24 H 1.08998 * 109.47191 * 239.99761 * 1 2 3 25 25 H 1.09002 * 109.47525 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47334 * 120.00208 * 1 2 3 27 27 H 0.96996 * 119.99309 * 5.28135 * 4 2 1 28 28 H 1.08002 * 120.03725 * 0.02562 * 6 5 4 29 29 H 1.08000 * 119.96216 * 179.97438 * 7 6 5 30 30 H 1.07994 * 119.92473 * 179.74007 * 8 7 6 31 31 H 1.08997 * 109.47121 * 30.24890 * 10 9 8 32 32 H 1.08999 * 109.47415 * 150.25556 * 10 9 8 33 33 H 0.97001 * 120.00354 * 344.99170 * 11 10 9 34 34 H 0.97001 * 119.99731 * 180.02562 * 18 17 15 35 35 H 1.08009 * 120.03091 * 179.76930 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5757 -1.1697 0.1119 6 6 4.2150 -0.1972 0.8700 7 6 5.5917 -0.2026 0.9783 8 6 6.3341 -1.1719 0.3285 9 6 5.7004 -2.1444 -0.4226 10 6 6.5128 -3.2020 -1.1242 11 7 6.8670 -2.7350 -2.4669 12 16 8.0526 -3.5082 -3.3265 13 8 8.1332 -2.8479 -4.5823 14 8 9.1609 -3.6450 -2.4478 15 6 7.4764 -5.1399 -3.6585 16 1 6.5038 -5.4511 -3.3069 17 6 8.2667 -6.0191 -4.3680 18 7 7.8368 -7.2371 -4.6153 19 14 9.9487 -5.4807 -4.9767 20 1 10.9701 -5.7850 -3.9427 21 1 10.2787 -6.2090 -6.2280 22 1 9.9342 -4.0198 -5.2434 23 6 4.3236 -2.1445 -0.5348 24 1 -0.3633 -0.5139 0.8899 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5139 -0.8900 27 1 1.6989 -2.0054 -0.0764 28 1 3.6360 0.5620 1.3749 29 1 6.0894 0.5535 1.5673 30 1 7.4108 -1.1715 0.4114 31 1 7.4222 -3.3981 -0.5561 32 1 5.9276 -4.1184 -1.2010 33 1 6.4070 -1.9730 -2.8525 34 1 8.3930 -7.8558 -5.1142 35 1 3.8293 -2.9023 -1.1248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:26 Heat of formation + Delta-G solvation = -120.693260 kcal Electronic energy + Delta-G solvation = -21280.478580 eV Core-core repulsion = 17789.982208 eV Total energy + Delta-G solvation = -3490.496372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52611 -39.73364 -37.68157 -36.58558 -36.47288 -35.41963 -35.15967 -31.91492 -31.76052 -29.44968 -28.54899 -26.66901 -23.54975 -23.19561 -21.22799 -20.97100 -19.46408 -18.87335 -18.43578 -17.92357 -17.18434 -17.14797 -16.81558 -16.59423 -15.83281 -15.67605 -15.34594 -15.14605 -14.97693 -14.58624 -14.27434 -14.09650 -13.69389 -13.46117 -13.40544 -13.33075 -13.03053 -12.88128 -12.68539 -12.55483 -12.52256 -12.17405 -11.84386 -11.40714 -11.31813 -11.21530 -10.93746 -10.25972 -9.84797 -9.12532 -8.94938 -7.50397 0.01349 0.29088 0.45625 1.07161 1.16315 1.24018 1.57970 1.91078 2.11195 2.43809 2.56549 2.89963 3.33952 3.65249 3.79174 3.95800 4.17369 4.22621 4.37385 4.40747 4.45103 4.55613 4.61494 4.66985 4.76909 4.96570 5.02785 5.10696 5.30053 5.37609 5.40416 5.51878 5.65383 6.02871 6.03445 6.25895 6.44029 6.56002 7.12356 8.22317 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.028402 B = 0.003495 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.621906 B = 8010.298917 C = 8449.058441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.578 6.578 4 N -0.664 5.664 5 C 0.134 3.866 6 C -0.130 4.130 7 C -0.102 4.102 8 C -0.125 4.125 9 C -0.080 4.080 10 C 0.159 3.841 11 N -1.107 6.107 12 S 2.699 3.301 13 O -1.031 7.031 14 O -1.028 7.028 15 C -1.035 5.035 16 H 0.111 0.889 17 C 0.110 3.890 18 N -0.853 5.853 19 Si 0.823 3.177 20 H -0.238 1.238 21 H -0.222 1.222 22 H -0.230 1.230 23 C -0.130 4.130 24 H 0.118 0.882 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.429 0.571 28 H 0.127 0.873 29 H 0.147 0.853 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.418 0.582 34 H 0.291 0.709 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.269 9.782 11.979 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.294 3.706 3 O -0.457 6.457 4 N -0.311 5.311 5 C 0.039 3.961 6 C -0.151 4.151 7 C -0.121 4.121 8 C -0.144 4.144 9 C -0.082 4.082 10 C 0.033 3.967 11 N -0.867 5.867 12 S 2.799 3.201 13 O -1.021 7.021 14 O -1.017 7.017 15 C -1.168 5.168 16 H 0.129 0.871 17 C -0.107 4.107 18 N -0.483 5.483 19 Si 0.640 3.360 20 H -0.162 1.162 21 H -0.144 1.144 22 H -0.153 1.153 23 C -0.151 4.151 24 H 0.136 0.864 25 H 0.111 0.889 26 H 0.132 0.868 27 H 0.268 0.732 28 H 0.145 0.855 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.252 0.748 34 H 0.101 0.899 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.002 10.547 11.740 20.448 hybrid contribution -0.148 -0.784 -0.616 1.008 sum -13.151 9.763 11.124 19.799 Atomic orbital electron populations 1.21958 0.86744 1.06591 1.06913 1.21928 0.92722 0.82330 0.73627 1.90735 1.71955 1.32987 1.50007 1.43623 1.04344 1.10904 1.72248 1.17794 0.83993 0.97161 0.97105 1.21235 0.95330 0.99325 0.99193 1.21245 0.93170 0.98501 0.99161 1.21318 1.00939 0.94546 0.97590 1.19635 0.93390 0.96861 0.98328 1.20229 0.99523 0.95560 0.81348 1.55084 1.58617 1.46175 1.26784 1.00465 0.72608 0.75115 0.71895 1.93440 1.86968 1.77614 1.44083 1.93374 1.52678 1.88360 1.67306 1.30953 1.15796 1.21145 1.48920 0.87082 1.25125 1.00036 0.94137 0.91410 1.70003 1.38742 1.05533 1.34026 0.87515 0.82086 0.83578 0.82776 1.16164 1.14440 1.15268 1.20977 0.93115 1.00711 1.00247 0.86391 0.88868 0.86777 0.73175 0.85515 0.83560 0.84857 0.89767 0.90161 0.74802 0.89871 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 10.32 71.23 0.74 -0.41 16 2 C 0.50 8.92 7.68 87.65 0.67 9.59 16 3 O -0.58 -16.07 14.77 -3.07 -0.05 -16.11 16 4 N -0.66 -10.60 5.34 -303.50 -1.62 -12.22 16 5 C 0.13 3.01 6.28 38.15 0.24 3.25 16 6 C -0.13 -3.16 8.66 22.39 0.19 -2.96 16 7 C -0.10 -2.33 10.04 22.25 0.22 -2.11 16 8 C -0.12 -3.12 9.70 22.29 0.22 -2.90 16 9 C -0.08 -2.13 5.27 -19.88 -0.10 -2.23 16 10 C 0.16 5.02 6.34 85.63 0.54 5.57 16 11 N -1.11 -40.89 5.99 -190.79 -1.14 -42.03 16 12 S 2.70 131.61 4.24 -56.49 -0.24 131.37 16 13 O -1.03 -54.76 16.02 -128.00 -2.05 -56.81 16 14 O -1.03 -53.25 16.30 -128.00 -2.09 -55.34 16 15 C -1.04 -56.92 10.26 67.73 0.69 -56.23 16 16 H 0.11 6.14 8.06 -2.91 -0.02 6.11 16 17 C 0.11 6.23 5.47 84.66 0.46 6.69 16 18 N -0.85 -48.69 13.96 21.45 0.30 -48.39 16 19 Si 0.82 40.83 26.54 68.60 1.82 42.65 16 20 H -0.24 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.22 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.23 -11.78 5.61 99.48 0.56 -11.23 16 23 C -0.13 -3.03 9.62 22.39 0.22 -2.81 16 24 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.09 0.76 8.12 -2.39 -0.02 0.74 16 26 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 27 H 0.43 3.62 8.82 -92.71 -0.82 2.81 16 28 H 0.13 3.18 6.42 -2.91 -0.02 3.16 16 29 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.08 2.71 7.70 -2.39 -0.02 2.69 16 32 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 33 H 0.42 13.70 8.64 -96.75 -0.84 12.86 16 34 H 0.29 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -76.73 317.21 -1.63 -78.36 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.66 Total: 23.06 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 4.09 Total: -44.55 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -2.46 Total: -102.64 kcal Atomic # 8 Polarization: -124.08 SS G_CDS: -4.18 Total: -128.26 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.82 Total: 42.65 kcal Atomic # 16 Polarization: 131.61 SS G_CDS: -0.24 Total: 131.37 kcal Total: -76.73 -1.63 -78.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.328 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds