Wall clock time and date at job start Tue Mar 31 2020 04:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99651 * 2 1 4 4 H 1.48490 * 109.47411 * 270.00156 * 3 2 1 5 5 H 1.48500 * 109.46919 * 30.00124 * 3 2 1 6 6 H 1.48498 * 109.47213 * 149.99646 * 3 2 1 7 7 C 1.37878 * 120.00540 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99536 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99976 * 180.02562 * 7 2 1 10 10 O 1.42097 * 106.40377 * 66.46450 * 9 7 2 11 11 O 1.42102 * 106.40087 * 293.54116 * 9 7 2 12 12 N 1.65598 * 107.21556 * 180.02562 * 9 7 2 13 13 C 1.46502 * 120.00108 * 64.99912 * 12 9 7 14 14 C 1.53000 * 109.47085 * 165.00049 * 13 12 9 15 15 N 1.46901 * 109.47158 * 180.02562 * 14 13 12 16 16 C 1.46830 * 110.98168 * 294.21498 * 15 14 13 17 17 C 1.53038 * 109.51757 * 174.15669 * 16 15 14 18 18 C 1.53127 * 109.27941 * 59.17550 * 17 16 15 19 19 C 1.53117 * 109.15989 * 302.34585 * 18 17 16 20 20 F 1.39901 * 109.50789 * 297.71707 * 19 18 17 21 21 F 1.39899 * 109.50269 * 177.59031 * 19 18 17 22 22 C 1.46847 * 111.00144 * 170.00079 * 15 14 13 23 23 H 0.96996 * 120.00763 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00339 * 245.00070 * 12 9 7 25 25 H 1.09002 * 109.47193 * 45.00178 * 13 12 9 26 26 H 1.08998 * 109.47554 * 285.00113 * 13 12 9 27 27 H 1.09001 * 109.47466 * 60.00253 * 14 13 12 28 28 H 1.09002 * 109.47083 * 299.99668 * 14 13 12 29 29 H 1.08995 * 109.46742 * 54.13906 * 16 15 14 30 30 H 1.09004 * 109.45381 * 294.16241 * 16 15 14 31 31 H 1.08997 * 109.50308 * 299.23764 * 17 16 15 32 32 H 1.09000 * 109.50697 * 179.11489 * 17 16 15 33 33 H 1.08997 * 109.52581 * 182.44219 * 18 17 16 34 34 H 1.08998 * 109.57452 * 62.28001 * 18 17 16 35 35 H 1.09002 * 109.46448 * 65.81961 * 22 15 14 36 36 H 1.08994 * 109.45958 * 305.84326 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7666 -1.1938 0.0012 10 8 4.1674 -0.6492 1.2510 11 8 4.1683 -0.6496 -1.2485 12 7 4.2569 -2.7756 0.0011 13 6 3.9620 -3.6337 -1.1491 14 6 4.8209 -4.8978 -1.0757 15 7 4.5257 -5.7581 -2.2293 16 6 3.1476 -6.2614 -2.1708 17 6 2.8294 -7.0309 -3.4549 18 6 3.8123 -8.1956 -3.6031 19 6 5.2423 -7.6483 -3.6127 20 9 5.4122 -6.8044 -4.7155 21 9 6.1486 -8.7110 -3.6926 22 6 5.4906 -6.8610 -2.3240 23 1 -0.4851 0.8399 -0.0004 24 1 4.7393 -3.1339 0.7625 25 1 4.1853 -3.0958 -2.0705 26 1 2.9076 -3.9096 -1.1358 27 1 4.5977 -5.4358 -0.1544 28 1 5.8753 -4.6219 -1.0891 29 1 2.4586 -5.4230 -2.0696 30 1 3.0398 -6.9256 -1.3133 31 1 2.9238 -6.3638 -4.3117 32 1 1.8116 -7.4178 -3.4045 33 1 3.6170 -8.7204 -4.5382 34 1 3.6915 -8.8842 -2.7668 35 1 5.3717 -7.5223 -1.4657 36 1 6.5032 -6.4577 -2.3341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:25 Heat of formation + Delta-G solvation = -180.484469 kcal Electronic energy + Delta-G solvation = -22798.013034 eV Core-core repulsion = 18886.527485 eV Total energy + Delta-G solvation = -3911.485549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.095 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.07978 -47.06731 -39.00235 -35.70972 -35.23099 -34.43226 -33.08387 -32.95972 -30.49907 -27.97623 -26.41880 -24.47191 -23.54677 -21.63109 -20.33243 -19.14041 -17.70831 -17.38165 -17.00826 -16.59067 -16.56350 -16.00510 -15.45899 -15.26590 -14.77007 -14.47488 -14.22081 -13.87943 -13.52202 -13.49179 -13.40392 -13.21353 -12.98152 -12.84514 -12.76578 -12.37812 -11.84451 -11.58894 -11.42188 -11.35392 -11.14330 -11.08383 -10.78148 -10.62316 -10.56256 -10.49242 -9.84940 -9.23949 -9.21451 -8.65616 -8.58012 -6.81285 -5.35413 2.04264 3.07395 3.18551 3.25021 3.27859 3.64531 3.83204 3.95464 4.14013 4.25719 4.40900 4.59004 4.65918 4.82216 4.97130 5.02367 5.09611 5.16746 5.24073 5.34217 5.35832 5.42485 5.50223 5.55316 5.75901 5.96107 6.04710 6.07001 6.19698 6.49188 6.70219 6.78892 7.46435 7.69384 8.18369 8.69797 10.30976 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.030934 B = 0.003620 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.946460 B = 7732.762043 C = 8087.663770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.153 3.847 3 Si 0.802 3.198 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.120 0.880 9 S 2.678 3.322 10 O -1.009 7.009 11 O -1.009 7.009 12 N -1.125 6.125 13 C 0.128 3.872 14 C 0.052 3.948 15 N -0.529 5.529 16 C 0.039 3.961 17 C -0.118 4.118 18 C -0.160 4.160 19 C 0.293 3.707 20 F -0.187 7.187 21 F -0.203 7.203 22 C 0.019 3.981 23 H 0.281 0.719 24 H 0.404 0.596 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.546 -16.825 -4.539 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.066 4.066 3 Si 0.622 3.378 4 H -0.169 1.169 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.150 5.150 8 H 0.138 0.862 9 S 2.779 3.221 10 O -0.999 6.999 11 O -0.999 6.999 12 N -0.881 5.881 13 C 0.001 3.999 14 C -0.076 4.076 15 N -0.254 5.254 16 C -0.088 4.088 17 C -0.155 4.155 18 C -0.198 4.198 19 C 0.256 3.744 20 F -0.168 7.168 21 F -0.184 7.184 22 C -0.110 4.110 23 H 0.091 0.909 24 H 0.235 0.765 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.933 -15.651 -5.162 17.880 hybrid contribution -0.233 -0.356 0.950 1.041 sum 6.700 -16.008 -4.212 17.857 Atomic orbital electron populations 1.69979 1.06606 1.29076 1.39638 1.24423 0.94786 0.98844 0.88560 0.87849 0.83552 0.84477 0.81877 1.16948 1.17947 1.14225 1.30449 1.15660 1.02122 1.66785 0.86163 1.01292 0.77282 0.70281 0.73240 1.93476 1.85546 1.75763 1.45112 1.93413 1.84997 1.75969 1.45535 1.55470 1.74449 1.31659 1.26569 1.21056 0.98548 0.90652 0.89651 1.22315 1.01265 0.93507 0.90560 1.61677 1.02307 1.18365 1.43065 1.22403 0.89889 0.99723 0.96811 1.21598 0.98566 0.96040 0.99331 1.22599 0.92078 1.00001 1.05125 1.20962 0.88900 0.79095 0.85413 1.93035 1.96190 1.71711 1.55876 1.93002 1.70492 1.58102 1.96828 1.22929 0.99128 0.93903 0.95048 0.90897 0.76478 0.89413 0.91736 0.93727 0.89712 0.88394 0.94038 0.89628 0.89714 0.89313 0.89150 0.91780 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.53 13.96 55.43 0.77 -22.76 16 2 C 0.15 4.36 5.47 -17.82 -0.10 4.26 16 3 Si 0.80 20.47 26.54 -169.99 -4.51 15.95 16 4 H -0.25 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.22 -5.71 5.61 56.52 0.32 -5.40 16 7 C -1.02 -27.77 10.26 30.60 0.31 -27.45 16 8 H 0.12 3.28 8.06 -52.49 -0.42 2.86 16 9 S 2.68 65.25 4.24 -107.50 -0.46 64.80 16 10 O -1.01 -26.56 16.02 -57.17 -0.92 -27.47 16 11 O -1.01 -26.62 16.30 -57.17 -0.93 -27.56 16 12 N -1.13 -20.27 6.00 -10.61 -0.06 -20.33 16 13 C 0.13 2.02 6.15 -4.04 -0.02 1.99 16 14 C 0.05 0.62 5.10 -3.82 -0.02 0.60 16 15 N -0.53 -5.94 4.59 -234.68 -1.08 -7.02 16 16 C 0.04 0.39 5.29 -3.84 -0.02 0.37 16 17 C -0.12 -1.00 5.97 -26.65 -0.16 -1.16 16 18 C -0.16 -1.28 5.53 -26.61 -0.15 -1.42 16 19 C 0.29 2.99 2.14 -26.65 -0.06 2.93 16 20 F -0.19 -2.38 16.60 2.25 0.04 -2.35 16 21 F -0.20 -2.20 17.07 2.25 0.04 -2.16 16 22 C 0.02 0.19 4.95 -3.83 -0.02 0.17 16 23 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.40 6.04 8.65 -34.47 -0.30 5.75 16 25 H 0.09 1.51 7.75 -51.93 -0.40 1.11 16 26 H 0.06 0.99 6.43 -51.93 -0.33 0.66 16 27 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.08 0.94 7.99 -51.93 -0.41 0.53 16 29 H 0.10 1.06 6.21 -51.93 -0.32 0.74 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.84 7.91 -51.93 -0.41 0.43 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.93 8.01 -51.93 -0.42 0.51 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -33.08 310.14 -7.44 -40.52 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.78 Total: 3.44 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -0.23 Total: -19.73 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.37 Total: -50.11 kcal Atomic # 8 Polarization: -53.18 SS G_CDS: -1.85 Total: -55.03 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.08 Total: -4.51 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.51 Total: 15.95 kcal Atomic # 16 Polarization: 65.25 SS G_CDS: -0.46 Total: 64.80 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.08 -7.44 -40.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.969 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds