Wall clock time and date at job start Tue Mar 31 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99651 * 2 1 4 4 H 1.48490 * 109.47411 * 270.00156 * 3 2 1 5 5 H 1.48500 * 109.46919 * 30.00124 * 3 2 1 6 6 H 1.48498 * 109.47213 * 149.99646 * 3 2 1 7 7 C 1.37878 * 120.00540 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99536 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99976 * 180.02562 * 7 2 1 10 10 O 1.42097 * 106.40377 * 66.46450 * 9 7 2 11 11 O 1.42102 * 106.40087 * 293.54116 * 9 7 2 12 12 N 1.65598 * 107.21556 * 180.02562 * 9 7 2 13 13 C 1.46502 * 120.00108 * 64.99912 * 12 9 7 14 14 C 1.53000 * 109.47085 * 165.00049 * 13 12 9 15 15 N 1.46901 * 109.47158 * 180.02562 * 14 13 12 16 16 C 1.46830 * 110.98168 * 294.21498 * 15 14 13 17 17 C 1.53038 * 109.51757 * 174.15669 * 16 15 14 18 18 C 1.53127 * 109.27941 * 59.17550 * 17 16 15 19 19 C 1.53117 * 109.15989 * 302.34585 * 18 17 16 20 20 F 1.39901 * 109.50789 * 297.71707 * 19 18 17 21 21 F 1.39899 * 109.50269 * 177.59031 * 19 18 17 22 22 C 1.46847 * 111.00144 * 170.00079 * 15 14 13 23 23 H 0.96996 * 120.00763 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00339 * 245.00070 * 12 9 7 25 25 H 1.09002 * 109.47193 * 45.00178 * 13 12 9 26 26 H 1.08998 * 109.47554 * 285.00113 * 13 12 9 27 27 H 1.09001 * 109.47466 * 60.00253 * 14 13 12 28 28 H 1.09002 * 109.47083 * 299.99668 * 14 13 12 29 29 H 1.08995 * 109.46742 * 54.13906 * 16 15 14 30 30 H 1.09004 * 109.45381 * 294.16241 * 16 15 14 31 31 H 1.08997 * 109.50308 * 299.23764 * 17 16 15 32 32 H 1.09000 * 109.50697 * 179.11489 * 17 16 15 33 33 H 1.08997 * 109.52581 * 182.44219 * 18 17 16 34 34 H 1.08998 * 109.57452 * 62.28001 * 18 17 16 35 35 H 1.09002 * 109.46448 * 65.81961 * 22 15 14 36 36 H 1.08994 * 109.45958 * 305.84326 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7666 -1.1938 0.0012 10 8 4.1674 -0.6492 1.2510 11 8 4.1683 -0.6496 -1.2485 12 7 4.2569 -2.7756 0.0011 13 6 3.9620 -3.6337 -1.1491 14 6 4.8209 -4.8978 -1.0757 15 7 4.5257 -5.7581 -2.2293 16 6 3.1476 -6.2614 -2.1708 17 6 2.8294 -7.0309 -3.4549 18 6 3.8123 -8.1956 -3.6031 19 6 5.2423 -7.6483 -3.6127 20 9 5.4122 -6.8044 -4.7155 21 9 6.1486 -8.7110 -3.6926 22 6 5.4906 -6.8610 -2.3240 23 1 -0.4851 0.8399 -0.0004 24 1 4.7393 -3.1339 0.7625 25 1 4.1853 -3.0958 -2.0705 26 1 2.9076 -3.9096 -1.1358 27 1 4.5977 -5.4358 -0.1544 28 1 5.8753 -4.6219 -1.0891 29 1 2.4586 -5.4230 -2.0696 30 1 3.0398 -6.9256 -1.3133 31 1 2.9238 -6.3638 -4.3117 32 1 1.8116 -7.4178 -3.4045 33 1 3.6170 -8.7204 -4.5382 34 1 3.6915 -8.8842 -2.7668 35 1 5.3717 -7.5223 -1.4657 36 1 6.5032 -6.4577 -2.3341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:24 Heat of formation + Delta-G solvation = -207.332327 kcal Electronic energy + Delta-G solvation = -22799.177245 eV Core-core repulsion = 18886.527485 eV Total energy + Delta-G solvation = -3912.649759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.90850 -47.92120 -39.83042 -37.68712 -36.52039 -36.47197 -35.17078 -33.94420 -31.28219 -29.02911 -28.53582 -25.42823 -24.29165 -22.66374 -21.17752 -20.97190 -19.49227 -18.67976 -18.24911 -17.82847 -17.50446 -17.13205 -17.00246 -16.39585 -16.15513 -15.65390 -15.37724 -15.22295 -15.09234 -14.90660 -14.57867 -14.27331 -14.18612 -13.80918 -13.64026 -13.46485 -13.34727 -13.18935 -12.89633 -12.69871 -12.61239 -12.52721 -12.37758 -11.92513 -11.88384 -11.78481 -11.32944 -11.30681 -11.19001 -10.20536 -9.43645 -8.95114 -7.50752 0.15063 1.06942 1.16439 1.23458 1.90862 2.31710 2.44986 2.71475 2.95087 3.12042 3.33340 3.42364 3.58001 3.83255 4.01186 4.08734 4.18983 4.28123 4.36251 4.46098 4.48741 4.51495 4.65709 4.71480 4.74912 4.89938 4.95286 5.07298 5.12296 5.29500 5.39992 5.85023 5.96029 6.02652 6.33626 6.55816 8.22238 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.030934 B = 0.003620 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.946460 B = 7732.762043 C = 8087.663770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.110 3.890 3 Si 0.823 3.177 4 H -0.241 1.241 5 H -0.221 1.221 6 H -0.228 1.228 7 C -1.037 5.037 8 H 0.109 0.891 9 S 2.701 3.299 10 O -1.028 7.028 11 O -1.031 7.031 12 N -1.108 6.108 13 C 0.121 3.879 14 C 0.062 3.938 15 N -0.547 5.547 16 C 0.035 3.965 17 C -0.114 4.114 18 C -0.154 4.154 19 C 0.284 3.716 20 F -0.207 7.207 21 F -0.208 7.208 22 C 0.021 3.979 23 H 0.291 0.709 24 H 0.421 0.579 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.126 -18.066 -4.041 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.107 4.107 3 Si 0.641 3.359 4 H -0.164 1.164 5 H -0.143 1.143 6 H -0.151 1.151 7 C -1.169 5.169 8 H 0.127 0.873 9 S 2.800 3.200 10 O -1.018 7.018 11 O -1.021 7.021 12 N -0.869 5.869 13 C -0.006 4.006 14 C -0.067 4.067 15 N -0.272 5.272 16 C -0.092 4.092 17 C -0.152 4.152 18 C -0.192 4.192 19 C 0.247 3.753 20 F -0.188 7.188 21 F -0.189 7.189 22 C -0.108 4.108 23 H 0.101 0.899 24 H 0.257 0.743 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.489 -16.890 -4.653 19.053 hybrid contribution -0.407 -0.081 0.762 0.868 sum 7.082 -16.971 -3.891 18.797 Atomic orbital electron populations 1.70000 1.07421 1.30444 1.40495 1.25131 0.95592 1.01378 0.88611 0.87512 0.82938 0.82983 0.82510 1.16415 1.14322 1.15072 1.30969 1.18001 1.01724 1.66239 0.87274 1.00406 0.75725 0.71618 0.72252 1.93441 1.85259 1.77370 1.45763 1.93384 1.84720 1.77524 1.46423 1.54886 1.73936 1.30022 1.28104 1.21231 0.99753 0.91839 0.87746 1.22165 1.00724 0.91924 0.91887 1.61584 1.03282 1.19392 1.42987 1.22461 0.88918 0.99647 0.98214 1.21578 0.99900 0.95871 0.97873 1.22609 0.90167 0.99914 1.06503 1.21314 0.90011 0.78967 0.84966 1.92996 1.96367 1.72430 1.57020 1.92990 1.70847 1.58207 1.96821 1.22951 0.98648 0.93722 0.95506 0.89872 0.74325 0.91316 0.91643 0.91523 0.88831 0.89966 0.92179 0.91572 0.87742 0.88591 0.86978 0.89458 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.82 13.96 21.45 0.30 -48.52 16 2 C 0.11 6.23 5.47 84.66 0.46 6.69 16 3 Si 0.82 40.81 26.54 68.60 1.82 42.63 16 4 H -0.24 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.22 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.23 -11.59 5.61 99.48 0.56 -11.03 16 7 C -1.04 -57.01 10.26 67.73 0.69 -56.32 16 8 H 0.11 6.06 8.06 -2.91 -0.02 6.03 16 9 S 2.70 130.29 4.24 -56.49 -0.24 130.05 16 10 O -1.03 -53.30 16.02 -128.00 -2.05 -55.35 16 11 O -1.03 -54.10 16.30 -128.00 -2.09 -56.19 16 12 N -1.11 -38.53 6.00 -187.49 -1.12 -39.66 16 13 C 0.12 3.69 6.15 86.38 0.53 4.22 16 14 C 0.06 1.32 5.10 86.30 0.44 1.76 16 15 N -0.55 -11.29 4.59 -896.39 -4.12 -15.41 16 16 C 0.03 0.63 5.29 86.33 0.46 1.08 16 17 C -0.11 -1.76 5.97 30.65 0.18 -1.58 16 18 C -0.15 -2.09 5.53 30.68 0.17 -1.93 16 19 C 0.28 5.30 2.14 30.65 0.07 5.36 16 20 F -0.21 -5.16 16.60 44.97 0.75 -4.41 16 21 F -0.21 -4.14 17.07 44.97 0.77 -3.37 16 22 C 0.02 0.35 4.95 86.33 0.43 0.78 16 23 H 0.29 15.01 8.31 -92.71 -0.77 14.24 16 24 H 0.42 11.73 8.65 -96.74 -0.84 10.89 16 25 H 0.07 2.37 7.75 -2.39 -0.02 2.35 16 26 H 0.07 1.99 6.43 -2.39 -0.02 1.98 16 27 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 28 H 0.09 1.84 7.99 -2.39 -0.02 1.83 16 29 H 0.08 1.73 6.21 -2.39 -0.01 1.71 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.07 1.28 7.91 -2.39 -0.02 1.26 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.66 8.01 -2.39 -0.02 1.64 16 Total: -1.00 -70.29 310.14 -2.44 -72.73 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.12 Total: 17.41 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 3.43 Total: -39.92 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.94 Total: -103.59 kcal Atomic # 8 Polarization: -107.40 SS G_CDS: -4.14 Total: -111.53 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 1.51 Total: -7.78 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.82 Total: 42.63 kcal Atomic # 16 Polarization: 130.29 SS G_CDS: -0.24 Total: 130.05 kcal Total: -70.29 -2.44 -72.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.606 kcal (2) G-P(sol) polarization free energy of solvation -70.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds