Wall clock time and date at job start Tue Mar 31 2020 03:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48491 * 109.47458 * 270.00203 * 3 2 1 5 5 H 1.48506 * 109.47251 * 30.00776 * 3 2 1 6 6 H 1.48502 * 109.46932 * 150.00156 * 3 2 1 7 7 C 1.37878 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99936 * 359.97438 * 7 2 1 10 10 O 1.42096 * 106.40154 * 66.46442 * 9 7 2 11 11 O 1.42102 * 106.40201 * 293.54129 * 9 7 2 12 12 N 1.65598 * 107.21529 * 180.02562 * 9 7 2 13 13 C 1.46499 * 120.00120 * 65.00285 * 12 9 7 14 14 H 1.09000 * 110.87894 * 27.38614 * 13 12 9 15 15 C 1.55144 * 110.98899 * 263.54407 * 13 12 9 16 16 C 1.54317 * 103.01756 * 206.21556 * 15 13 12 17 17 N 1.47437 * 107.23617 * 22.28581 * 16 15 13 18 18 C 1.38539 * 111.00408 * 123.25658 * 17 16 15 19 19 C 1.39662 * 120.53513 * 60.15081 * 18 17 16 20 20 C 1.38071 * 118.33870 * 180.28740 * 19 18 17 21 21 N 1.32583 * 119.19682 * 359.43810 * 20 19 18 22 22 C 1.31763 * 121.01118 * 0.28413 * 21 20 19 23 23 N 1.31774 * 121.83136 * 0.02562 * 22 21 20 24 24 C 1.47850 * 108.56702 * 0.98862 * 17 16 15 25 25 H 0.97003 * 119.99952 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00326 * 244.99569 * 12 9 7 27 27 H 1.09002 * 110.70638 * 87.83487 * 15 13 12 28 28 H 1.08993 * 110.70543 * 324.59845 * 15 13 12 29 29 H 1.08997 * 109.88900 * 262.87600 * 16 15 13 30 30 H 1.09004 * 109.88974 * 141.68779 * 16 15 13 31 31 H 1.08005 * 120.83224 * 0.02864 * 19 18 17 32 32 H 1.08002 * 120.40604 * 179.72147 * 20 19 18 33 33 H 1.08002 * 119.08108 * 179.97438 * 22 21 20 34 34 H 1.08994 * 110.37608 * 94.73167 * 24 17 16 35 35 H 1.09003 * 110.37385 * 217.07940 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2483 -3.9353 -0.0005 13 6 3.1393 -4.1088 1.1493 14 1 2.6723 -3.7386 2.0620 15 6 4.5053 -3.4154 0.9035 16 6 5.4706 -4.2226 1.7968 17 7 4.8512 -5.5400 2.0304 18 6 5.6915 -6.5631 1.6224 19 6 6.9556 -6.7147 2.1965 20 6 7.7581 -7.7463 1.7514 21 7 7.3023 -8.5600 0.8091 22 6 6.1021 -8.3941 0.2912 23 7 5.3054 -7.4197 0.6816 24 6 3.5640 -5.5904 1.3048 25 1 -0.4850 0.8401 0.0004 26 1 2.3172 -4.5325 -0.7618 27 1 4.4702 -2.3724 1.2181 28 1 4.7939 -3.4935 -0.1446 29 1 5.6155 -3.7073 2.7463 30 1 6.4277 -4.3475 1.2904 31 1 7.2985 -6.0393 2.9664 32 1 8.7435 -7.8916 2.1690 33 1 5.7623 -9.0750 -0.4751 34 1 3.6978 -6.0514 0.3262 35 1 2.8223 -6.1388 1.8855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002799.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:10 Heat of formation + Delta-G solvation = -23.969889 kcal Electronic energy + Delta-G solvation = -21972.320321 eV Core-core repulsion = 18518.310940 eV Total energy + Delta-G solvation = -3454.009381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.40983 -39.03777 -35.29468 -34.78966 -33.98461 -33.30356 -33.09387 -31.73986 -29.64926 -27.89581 -26.17045 -24.44049 -23.97670 -21.37694 -20.90882 -19.08577 -18.06879 -17.62456 -17.42799 -16.45745 -15.81443 -15.63222 -15.58711 -14.95088 -14.60450 -14.23733 -14.05020 -13.94786 -13.67737 -13.35761 -13.07463 -12.36387 -12.10034 -12.02155 -11.62707 -11.25742 -11.21575 -11.12385 -10.80481 -10.70621 -10.60667 -10.37354 -10.32305 -10.20745 -10.04225 -9.43575 -9.27959 -9.06904 -8.70493 -8.54695 -6.73329 -5.35525 0.77345 0.90940 2.27058 3.03696 3.10743 3.15263 3.25976 3.65044 3.97932 4.02817 4.06289 4.42981 4.61205 4.66355 4.75803 4.84662 4.92006 5.09273 5.22423 5.33740 5.34469 5.41199 5.59242 5.78699 5.86594 5.95615 6.08662 6.14383 6.17687 6.29931 6.53286 6.80289 6.84819 6.95343 7.28890 7.82486 7.93553 7.95758 8.85678 10.21089 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.027508 B = 0.003977 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.635609 B = 7038.567467 C = 7635.882465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.104 0.896 9 S 2.714 3.286 10 O -1.005 7.005 11 O -1.005 7.005 12 N -1.125 6.125 13 C 0.153 3.847 14 H 0.111 0.889 15 C -0.163 4.163 16 C 0.051 3.949 17 N -0.467 5.467 18 C 0.358 3.642 19 C -0.241 4.241 20 C 0.159 3.841 21 N -0.547 5.547 22 C 0.319 3.681 23 N -0.556 5.556 24 C 0.037 3.963 25 H 0.291 0.709 26 H 0.403 0.597 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.195 0.805 34 H 0.091 0.909 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.973 -10.131 3.632 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.153 5.153 8 H 0.122 0.878 9 S 2.813 3.187 10 O -0.996 6.996 11 O -0.995 6.995 12 N -0.877 5.877 13 C 0.043 3.957 14 H 0.128 0.872 15 C -0.203 4.203 16 C -0.074 4.074 17 N -0.184 5.184 18 C 0.117 3.883 19 C -0.267 4.267 20 C -0.004 4.004 21 N -0.264 5.264 22 C 0.030 3.970 23 N -0.276 5.276 24 C -0.091 4.091 25 H 0.101 0.899 26 H 0.234 0.766 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.165 0.835 32 H 0.184 0.816 33 H 0.211 0.789 34 H 0.109 0.891 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.378 -10.684 3.665 17.509 hybrid contribution 1.432 1.555 -0.323 2.139 sum 14.810 -9.129 3.342 17.716 Atomic orbital electron populations 1.69898 1.06799 1.30754 1.39960 1.24739 0.94435 1.00784 0.88529 0.86176 0.80124 0.80179 0.79138 1.19265 1.19991 1.18684 1.30568 1.06068 1.11702 1.66964 0.87816 1.00476 0.72052 0.73266 0.72860 1.93380 1.72960 1.87598 1.45634 1.93365 1.72780 1.87475 1.45904 1.55990 1.54956 1.51039 1.25743 1.21629 0.89882 0.93731 0.90474 0.87155 1.23429 0.95186 1.01350 1.00358 1.22979 0.97112 0.86122 1.01203 1.60470 1.04290 1.02407 1.51215 1.20340 0.89249 0.91951 0.86796 1.22385 0.95602 1.03518 1.05164 1.23023 0.99053 0.88206 0.90152 1.68433 1.16448 1.29098 1.12391 1.24811 0.85346 0.91664 0.95203 1.68362 1.38037 1.07555 1.13618 1.23409 0.88370 0.97592 0.99689 0.89862 0.76587 0.88422 0.90304 0.88669 0.91659 0.83462 0.81610 0.78867 0.89122 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.36 13.19 55.43 0.73 -23.63 16 2 C 0.13 3.60 5.46 -17.82 -0.10 3.51 16 3 Si 0.92 19.91 29.54 -169.99 -5.02 14.89 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -1.02 -26.73 9.72 30.60 0.30 -26.43 16 8 H 0.10 2.42 6.78 -52.49 -0.36 2.07 16 9 S 2.71 69.47 5.01 -107.50 -0.54 68.93 16 10 O -1.01 -28.92 18.02 -57.17 -1.03 -29.95 16 11 O -1.01 -28.55 17.41 -57.17 -1.00 -29.54 16 12 N -1.12 -21.19 5.65 -3.07 -0.02 -21.21 16 13 C 0.15 2.48 3.69 -65.79 -0.24 2.24 16 14 H 0.11 1.93 7.62 -51.93 -0.40 1.54 16 15 C -0.16 -2.27 6.33 -24.91 -0.16 -2.42 16 16 C 0.05 0.58 6.50 -2.84 -0.02 0.56 16 17 N -0.47 -5.89 5.20 -169.81 -0.88 -6.78 16 18 C 0.36 4.36 6.14 -154.79 -0.95 3.41 16 19 C -0.24 -2.33 9.17 -39.11 -0.36 -2.69 16 20 C 0.16 1.42 11.29 -17.29 -0.20 1.23 16 21 N -0.55 -5.91 10.43 -14.67 -0.15 -6.06 16 22 C 0.32 3.46 12.28 -92.20 -1.13 2.32 16 23 N -0.56 -7.01 8.33 -13.81 -0.11 -7.13 16 24 C 0.04 0.52 6.04 -2.29 -0.01 0.51 16 25 H 0.29 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.40 6.64 8.74 -34.47 -0.30 6.34 16 27 H 0.10 1.39 7.44 -51.93 -0.39 1.01 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.65 7.18 -51.93 -0.37 0.28 16 31 H 0.15 1.10 8.04 -52.48 -0.42 0.68 16 32 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.19 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.09 1.28 6.47 -51.93 -0.34 0.95 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 311.83 15.07 4.70 4.70 Total: -1.00 -35.45 311.83 -10.01 -45.46 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -3.82 Total: 8.08 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.87 Total: -17.77 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.44 Total: -64.81 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: -2.03 Total: -59.49 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 69.47 SS G_CDS: -0.54 Total: 68.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.45 -10.01 -45.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002799.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.492 kcal (2) G-P(sol) polarization free energy of solvation -35.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds