Wall clock time and date at job start Tue Mar 31 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48503 * 109.47268 * 240.00007 * 3 2 1 5 5 H 1.48498 * 109.47426 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46856 * 120.00493 * 3 2 1 7 7 C 1.37877 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00226 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40023 * 66.45967 * 9 7 2 11 11 O 1.42102 * 106.40105 * 293.54230 * 9 7 2 12 12 N 1.65594 * 107.21726 * 180.02562 * 9 7 2 13 13 C 1.40308 * 120.00244 * 65.00289 * 12 9 7 14 14 C 1.40619 * 120.08780 * 179.97438 * 13 12 9 15 15 C 1.36380 * 119.25250 * 179.97438 * 14 13 12 16 16 C 1.40475 * 119.40788 * 0.02562 * 15 14 13 17 17 O 1.22113 * 119.91634 * 180.02562 * 16 15 14 18 18 N 1.34629 * 120.15801 * 359.97438 * 16 15 14 19 19 C 1.46494 * 119.61755 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47705 * 89.99393 * 19 18 16 21 21 C 1.52999 * 117.50117 * 243.62693 * 20 19 18 22 22 C 1.52996 * 117.50294 * 174.99969 * 20 19 18 23 23 C 1.35873 * 120.08563 * 359.97438 * 13 12 9 24 24 H 0.97002 * 119.99909 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00181 * 244.99788 * 12 9 7 26 26 H 1.08002 * 120.37481 * 359.97438 * 14 13 12 27 27 H 1.08000 * 120.29344 * 180.27214 * 15 14 13 28 28 H 1.09000 * 109.47353 * 210.00042 * 19 18 16 29 29 H 1.09005 * 109.47232 * 329.99046 * 19 18 16 30 30 H 1.09006 * 115.54953 * 29.33582 * 20 19 18 31 31 H 1.08996 * 117.49639 * 359.97438 * 21 20 19 32 32 H 1.08998 * 117.50104 * 145.01814 * 21 20 19 33 33 H 1.08994 * 117.50392 * 214.98004 * 22 20 19 34 34 H 1.08999 * 117.50052 * 359.97438 * 22 20 19 35 35 H 1.08005 * 119.70986 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2494 12 7 2.2482 -3.9354 -0.0005 13 6 3.1016 -4.1015 1.1007 14 6 4.0570 -5.1333 1.1028 15 6 4.8781 -5.2790 2.1819 16 6 4.7528 -4.3971 3.2681 17 8 5.4835 -4.5188 4.2389 18 7 3.8297 -3.4174 3.2409 19 6 3.7096 -2.5040 4.3799 20 6 4.6275 -1.2988 4.1662 21 6 5.7732 -1.0982 5.1602 22 6 4.5592 -0.1676 5.1942 23 6 3.0070 -3.2659 2.1679 24 1 -0.4850 0.8401 0.0004 25 1 2.3171 -4.5325 -0.7618 26 1 4.1396 -5.8029 0.2594 27 1 5.6208 -6.0629 2.1995 28 1 2.6775 -2.1641 4.4658 29 1 3.9983 -3.0230 5.2940 30 1 4.8084 -1.0240 3.1270 31 1 5.8728 -1.8247 5.9666 32 1 6.7083 -0.6917 4.7750 33 1 4.6956 0.8511 4.8314 34 1 3.8600 -0.2819 6.0225 35 1 2.2722 -2.4743 2.1645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193005556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:45 Heat of formation + Delta-G solvation = -63.303213 kcal Electronic energy + Delta-G solvation = -22587.182213 eV Core-core repulsion = 19099.174460 eV Total energy + Delta-G solvation = -3488.007753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.06750 -37.47616 -37.09793 -35.53133 -34.79448 -34.29380 -33.31458 -32.76241 -28.46365 -27.17577 -26.36036 -23.82895 -22.41569 -22.26029 -20.65729 -19.36468 -18.20644 -17.81641 -16.86154 -16.41481 -15.90884 -15.64044 -15.51765 -15.02950 -14.57438 -14.25638 -14.05730 -13.91306 -13.38599 -13.14883 -12.57547 -12.48801 -12.20409 -12.05582 -11.79887 -11.45740 -11.45293 -11.33159 -10.75060 -10.70537 -10.62212 -10.57351 -10.41133 -10.13328 -9.92625 -9.59469 -9.55832 -9.41084 -9.02645 -7.13993 -6.88143 -5.55644 1.04839 1.92665 2.23606 2.87953 2.97113 3.03151 3.07919 3.84876 3.88657 3.92058 4.35514 4.45793 4.75224 4.89655 4.97781 5.00956 5.05863 5.12890 5.33582 5.46928 5.53804 5.63157 5.64734 5.72407 5.87373 5.94142 6.00601 6.16952 6.20073 6.23720 6.33232 6.66986 6.84076 7.13404 7.34572 7.62262 7.75877 8.34033 8.68387 10.04076 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.007455 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.067944 B = 3755.062951 C = 5307.781760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.137 3.863 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.261 1.261 7 C -1.022 5.022 8 H 0.107 0.893 9 S 2.700 3.300 10 O -0.993 6.993 11 O -0.995 6.995 12 N -1.059 6.059 13 C 0.078 3.922 14 C -0.028 4.028 15 C -0.233 4.233 16 C 0.504 3.496 17 O -0.568 6.568 18 N -0.471 5.471 19 C 0.125 3.875 20 C -0.171 4.171 21 C -0.169 4.169 22 C -0.172 4.172 23 C 0.068 3.932 24 H 0.295 0.705 25 H 0.416 0.584 26 H 0.137 0.863 27 H 0.150 0.850 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 -3.099 4.787 9.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.083 4.083 3 Si 0.743 3.257 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.156 5.156 8 H 0.125 0.875 9 S 2.801 3.199 10 O -0.983 6.983 11 O -0.985 6.985 12 N -0.803 5.803 13 C -0.023 4.023 14 C -0.053 4.053 15 C -0.255 4.255 16 C 0.306 3.694 17 O -0.452 6.452 18 N -0.182 5.182 19 C 0.004 3.996 20 C -0.190 4.190 21 C -0.206 4.206 22 C -0.209 4.209 23 C -0.062 4.062 24 H 0.105 0.895 25 H 0.248 0.752 26 H 0.155 0.845 27 H 0.167 0.833 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.953 -3.112 5.524 9.409 hybrid contribution 0.901 0.933 -0.744 1.495 sum 7.854 -2.179 4.780 9.449 Atomic orbital electron populations 1.69870 1.06773 1.31252 1.38966 1.24712 0.94461 1.00774 0.88338 0.86189 0.79944 0.79458 0.80073 1.18738 1.19977 1.18571 1.30413 1.06255 1.10962 1.67938 0.87508 1.01079 0.72078 0.73504 0.73247 1.93402 1.72425 1.87283 1.45219 1.93381 1.72538 1.87265 1.45276 1.54023 1.52168 1.50367 1.23715 1.16441 0.97041 0.99001 0.89807 1.21310 0.91491 0.94489 0.98006 1.21934 1.05032 1.03845 0.94699 1.17068 0.81226 0.81727 0.89393 1.90913 1.44523 1.74039 1.35773 1.45083 1.29460 1.27414 1.16249 1.21540 1.00924 0.88579 0.88584 1.22608 1.01501 0.97320 0.97587 1.23011 0.93078 1.02658 1.01880 1.22955 1.01364 0.95443 1.01167 1.22176 0.96452 1.00983 0.86622 0.89491 0.75192 0.84471 0.83278 0.88157 0.88139 0.86996 0.88385 0.89024 0.88535 0.88471 0.79327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.70 13.19 55.43 0.73 -21.97 16 2 C 0.14 3.48 5.46 -17.82 -0.10 3.38 16 3 Si 0.92 19.02 29.54 -169.99 -5.02 14.00 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -1.02 -25.31 8.38 30.60 0.26 -25.05 16 8 H 0.11 2.43 7.81 -52.49 -0.41 2.02 16 9 S 2.70 64.94 4.56 -107.50 -0.49 64.45 16 10 O -0.99 -26.88 18.02 -57.17 -1.03 -27.91 16 11 O -0.99 -25.79 15.66 -57.17 -0.90 -26.69 16 12 N -1.06 -19.19 5.90 32.31 0.19 -19.00 16 13 C 0.08 1.34 6.56 -83.93 -0.55 0.79 16 14 C -0.03 -0.39 9.96 -39.35 -0.39 -0.78 16 15 C -0.23 -3.39 9.98 -39.41 -0.39 -3.79 16 16 C 0.50 8.74 7.40 -15.48 -0.11 8.62 16 17 O -0.57 -11.04 16.63 4.81 0.08 -10.96 16 18 N -0.47 -7.97 2.59 -119.56 -0.31 -8.28 16 19 C 0.13 1.86 5.61 -4.05 -0.02 1.84 16 20 C -0.17 -2.45 6.01 -90.62 -0.54 -2.99 16 21 C -0.17 -2.12 10.18 -26.73 -0.27 -2.39 16 22 C -0.17 -2.05 10.25 -26.73 -0.27 -2.32 16 23 C 0.07 1.25 8.79 -16.52 -0.15 1.11 16 24 H 0.29 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.42 6.09 8.86 -34.47 -0.31 5.79 16 26 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.10 1.39 8.02 -51.93 -0.42 0.97 16 29 H 0.10 1.43 7.12 -51.93 -0.37 1.06 16 30 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.10 1.21 8.03 -51.93 -0.42 0.79 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.19 3.86 4.65 -52.48 -0.24 3.61 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -32.88 317.48 -8.34 -41.22 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -3.83 Total: 11.93 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.55 Total: -21.58 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.61 Total: -49.25 kcal Atomic # 8 Polarization: -63.72 SS G_CDS: -1.85 Total: -65.56 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Atomic # 16 Polarization: 64.94 SS G_CDS: -0.49 Total: 64.45 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.88 -8.34 -41.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193005556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.081 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds