Wall clock time and date at job start Tue Mar 31 2020 03:17:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31413 * 1
3 3 Si 1.86801 * 120.00203 * 2 1
4 4 H 1.48499 * 109.47240 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47018 * 299.99973 * 3 2 1
6 6 H 1.48501 * 109.46987 * 59.99307 * 3 2 1
7 7 C 1.38951 * 120.00225 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00469 * 180.02562 * 7 2 1
9 9 N 1.37105 * 119.99507 * 359.97438 * 7 2 1
10 10 C 1.34781 * 119.99595 * 180.02562 * 9 7 2
11 11 O 1.21294 * 119.99992 * 0.02562 * 10 9 7
12 12 C 1.50692 * 119.99747 * 179.97438 * 10 9 7
13 13 N 1.46505 * 109.47310 * 180.02562 * 12 10 9
14 14 C 1.38900 * 120.00230 * 180.02562 * 13 12 10
15 15 C 1.39608 * 120.55125 * 354.57936 * 14 13 12
16 16 C 1.38153 * 118.44430 * 180.02562 * 15 14 13
17 17 C 1.38981 * 119.46411 * 0.02562 * 16 15 14
18 18 Cl 1.73605 * 119.45259 * 179.97438 * 17 16 15
19 19 N 1.31421 * 121.09138 * 0.02562 * 17 16 15
20 20 C 1.32939 * 121.69067 * 359.97438 * 19 17 16
21 21 C 1.47711 * 119.79285 * 180.02562 * 20 19 17
22 22 N 1.34769 * 120.00289 * 5.60894 * 21 20 19
23 23 O 1.21576 * 119.99801 * 185.60442 * 21 20 19
24 24 H 0.97003 * 119.99572 * 0.02562 * 1 2 3
25 25 H 0.96999 * 119.99973 * 359.97438 * 9 7 2
26 26 H 1.09004 * 109.47237 * 60.00222 * 12 10 9
27 27 H 1.09004 * 109.47704 * 300.00454 * 12 10 9
28 28 H 0.97001 * 119.99445 * 0.02562 * 13 12 10
29 29 H 1.08007 * 120.77756 * 0.02562 * 15 14 13
30 30 H 1.07998 * 120.26914 * 179.97438 * 16 15 14
31 31 H 0.97005 * 119.99962 * 359.97438 * 22 21 20
32 32 H 0.97001 * 120.00496 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6177 0.0000
4 1 3.7082 1.3463 0.0006
5 1 1.8895 2.3964 -1.2125
6 1 1.8893 2.3965 1.2124
7 6 2.0089 -1.2033 -0.0005
8 1 3.0889 -1.2034 -0.0001
9 7 1.3234 -2.3907 -0.0005
10 6 1.9973 -3.5579 -0.0005
11 8 3.2102 -3.5578 -0.0001
12 6 1.2438 -4.8629 0.0000
13 7 2.1958 -5.9765 0.0005
14 6 1.7328 -7.2860 0.0006
15 6 0.3677 -7.5561 0.1137
16 6 -0.0448 -8.8746 0.1096
17 6 0.9010 -9.8864 -0.0055
18 17 0.3824 -11.5432 -0.0101
19 7 2.1816 -9.6098 -0.1099
20 6 2.6277 -8.3575 -0.1107
21 6 4.0762 -8.0945 -0.2309
22 7 4.9300 -9.1134 -0.4527
23 8 4.4983 -6.9588 -0.1299
24 1 -0.4850 0.8401 -0.0004
25 1 0.3534 -2.3906 0.0002
26 1 0.6168 -4.9209 -0.8897
27 1 0.6174 -4.9205 0.8902
28 1 3.1494 -5.7992 0.0008
29 1 -0.3490 -6.7530 0.2025
30 1 -1.0936 -9.1172 0.1958
31 1 4.5933 -10.0196 -0.5329
32 1 5.8812 -8.9407 -0.5320
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001319327951.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:17:13
Heat of formation + Delta-G solvation = -67.244355 kcal
Electronic energy + Delta-G solvation = -20847.759683 eV
Core-core repulsion = 17253.996979 eV
Total energy + Delta-G solvation = -3593.762704 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 298.062 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.91935 -40.29349 -39.86045 -37.68654 -36.93980 -35.98754 -34.72752 -33.39675
-33.14219 -31.44331 -28.47340 -26.37720 -25.99514 -23.42554 -22.44999 -21.19426
-20.06385 -19.34207 -19.08382 -18.21437 -17.34477 -17.08650 -16.90393 -16.65653
-16.35422 -16.12965 -15.93084 -15.32014 -15.06091 -14.99292 -14.46488 -14.19824
-13.93389 -13.79915 -13.54460 -12.98165 -12.69739 -12.46554 -12.21429 -12.14308
-11.61782 -11.60134 -11.52975 -10.81776 -10.74464 -10.66408 -10.56014 -10.09648
-8.67560 -8.52893 -6.01912 -0.39187 0.20303 0.88579 1.33322 1.41362
1.54675 1.60809 1.90806 2.10843 2.33022 2.41851 2.70430 3.10701
3.14237 3.33807 3.71691 3.77869 3.92134 4.16263 4.35294 4.41025
4.42565 4.75401 4.82135 5.18186 5.37254 5.73222 5.83914 6.02454
6.20446 6.49882 6.58849 6.61984 7.04659 7.26211 7.43729 7.98347
8.63988
Molecular weight = 298.06amu
Principal moments of inertia in cm(-1)
A = 0.026869 B = 0.003160 C = 0.002834
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1041.858576 B = 8857.356834 C = 9879.202578
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C -0.005 4.005
3 Si 0.991 3.009
4 H -0.277 1.277
5 H -0.269 1.269
6 H -0.269 1.269
7 C -0.339 4.339
8 H 0.077 0.923
9 N -0.556 5.556
10 C 0.424 3.576
11 O -0.629 6.629
12 C 0.109 3.891
13 N -0.704 5.704
14 C 0.227 3.773
15 C -0.153 4.153
16 C -0.055 4.055
17 C 0.094 3.906
18 Cl -0.026 7.026
19 N -0.412 5.412
20 C -0.035 4.035
21 C 0.577 3.423
22 N -0.814 5.814
23 O -0.577 6.577
24 H 0.281 0.719
25 H 0.402 0.598
26 H 0.114 0.886
27 H 0.116 0.884
28 H 0.420 0.580
29 H 0.179 0.821
30 H 0.187 0.813
31 H 0.421 0.579
32 H 0.413 0.587
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.561 -20.816 -0.360 21.313
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.551 5.551
2 C -0.206 4.206
3 Si 0.815 3.185
4 H -0.201 1.201
5 H -0.194 1.194
6 H -0.194 1.194
7 C -0.468 4.468
8 H 0.095 0.905
9 N -0.193 5.193
10 C 0.211 3.789
11 O -0.517 6.517
12 C -0.019 4.019
13 N -0.340 5.340
14 C 0.110 3.890
15 C -0.183 4.183
16 C -0.077 4.077
17 C -0.080 4.080
18 Cl 0.002 6.998
19 N -0.125 5.125
20 C -0.177 4.177
21 C 0.363 3.637
22 N -0.377 5.377
23 O -0.457 6.457
24 H 0.090 0.910
25 H 0.237 0.763
26 H 0.132 0.868
27 H 0.134 0.866
28 H 0.271 0.729
29 H 0.197 0.803
30 H 0.205 0.795
31 H 0.253 0.747
32 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -3.238 -20.457 -0.357 20.715
hybrid contribution 0.126 1.096 -0.008 1.103
sum -3.112 -19.361 -0.366 19.613
Atomic orbital electron populations
1.69650 1.06648 1.29543 1.49292 1.26003 0.96567 1.02253 0.95805
0.84895 0.77949 0.77127 0.78521 1.20139 1.19372 1.19366 1.19687
0.92724 0.83886 1.50503 0.90509 1.41774 1.09548 1.04262 1.63702
1.20683 0.88214 0.86432 0.83583 1.90557 1.16050 1.87546 1.57552
1.21196 0.91752 0.83476 1.05427 1.45738 1.12503 1.01410 1.74328
1.19082 0.94553 0.84887 0.90495 1.21586 0.92641 0.98749 1.05356
1.22165 1.02180 0.90042 0.93276 1.21505 0.89537 0.88197 1.08729
1.98387 1.88517 1.15831 1.97092 1.66493 1.17507 1.19900 1.08577
1.19951 0.93325 0.87720 1.16705 1.17944 0.85743 0.84624 0.75413
1.43356 1.10645 1.10607 1.73093 1.90616 1.77945 1.23156 1.54014
0.90987 0.76292 0.86811 0.86617 0.72945 0.80341 0.79536 0.74717
0.75440
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -47.12 13.05 21.66 0.28 -46.83 16
2 C -0.01 -0.27 5.50 84.93 0.47 0.20 16
3 Si 0.99 42.10 29.55 68.60 2.03 44.13 16
4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16
5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16
6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16
7 C -0.34 -18.89 9.68 84.04 0.81 -18.08 16
8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16
9 N -0.56 -27.45 5.29 -306.98 -1.62 -29.08 16
10 C 0.42 19.88 7.85 87.65 0.69 20.57 16
11 O -0.63 -35.82 15.24 -3.07 -0.05 -35.87 16
12 C 0.11 3.54 5.45 85.63 0.47 4.01 16
13 N -0.70 -24.64 5.56 -342.21 -1.90 -26.54 16
14 C 0.23 6.40 6.67 38.79 0.26 6.66 16
15 C -0.15 -2.99 9.41 22.58 0.21 -2.77 16
16 C -0.06 -0.88 9.87 22.43 0.22 -0.66 16
17 C 0.09 1.88 7.27 84.93 0.62 2.50 16
18 Cl -0.03 -0.44 29.10 -2.72 -0.08 -0.52 16
19 N -0.41 -9.91 9.52 -175.49 -1.67 -11.58 16
20 C -0.04 -1.00 6.76 41.92 0.28 -0.71 16
21 C 0.58 17.71 8.06 86.75 0.70 18.41 16
22 N -0.81 -17.02 8.86 -175.70 -1.56 -18.58 16
23 O -0.58 -23.07 14.45 -3.96 -0.06 -23.13 16
24 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16
25 H 0.40 18.18 7.90 -92.71 -0.73 17.45 16
26 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16
27 H 0.12 2.98 7.78 -2.38 -0.02 2.96 16
28 H 0.42 18.06 3.94 -95.37 -0.38 17.68 16
29 H 0.18 2.48 6.87 -2.91 -0.02 2.46 16
30 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16
31 H 0.42 6.98 8.17 -92.70 -0.76 6.22 16
32 H 0.41 7.18 8.93 -92.71 -0.83 6.35 16
Total: -1.00 -73.29 303.71 -1.34 -74.63
By element:
Atomic # 1 Polarization: 44.69 SS G_CDS: -1.44 Total: 43.24 kcal
Atomic # 6 Polarization: 25.39 SS G_CDS: 4.73 Total: 30.12 kcal
Atomic # 7 Polarization: -126.14 SS G_CDS: -6.47 Total: -132.61 kcal
Atomic # 8 Polarization: -58.90 SS G_CDS: -0.10 Total: -59.00 kcal
Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal
Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal
Total: -73.29 -1.34 -74.63 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001319327951.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.390 kcal
(2) G-P(sol) polarization free energy of solvation -73.292 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.902 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.635 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds