Wall clock time and date at job start Tue Mar 31 2020 04:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.35779 * 124.88937 * 125.00428 * 3 2 1 5 5 C 1.35954 * 107.05830 * 180.02562 * 4 3 2 6 6 N 1.40337 * 127.29195 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00146 * 359.97387 * 6 5 4 8 8 O 1.21296 * 119.99783 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99911 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.46950 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99791 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00260 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99718 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99947 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99920 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47089 * 89.99556 * 15 13 11 17 17 H 1.48500 * 109.47287 * 209.99656 * 15 13 11 18 18 H 1.48502 * 109.47082 * 329.99726 * 15 13 11 19 19 C 1.41884 * 105.41349 * 359.97438 * 5 4 3 20 20 C 1.47514 * 126.47357 * 180.02562 * 19 5 4 21 21 N 1.34778 * 119.99962 * 179.97438 * 20 19 5 22 22 O 1.21586 * 119.99877 * 359.97438 * 20 19 5 23 23 N 1.28436 * 124.89403 * 304.69990 * 3 2 1 24 24 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 25 25 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 27 27 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 28 28 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 29 29 H 1.07997 * 126.47177 * 359.96046 * 4 3 2 30 30 H 0.96999 * 120.00082 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46537 * 299.99627 * 9 7 6 32 32 H 1.09000 * 109.47172 * 59.99954 * 9 7 6 33 33 H 0.97006 * 119.99519 * 179.97438 * 14 13 11 34 34 H 0.96999 * 119.99785 * 0.02562 * 21 20 19 35 35 H 0.96996 * 120.00183 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8796 1.9006 0.9123 5 6 3.0854 3.2005 0.5716 6 7 3.9026 4.1328 1.2293 7 6 4.5901 3.7682 2.3297 8 8 4.5029 2.6342 2.7513 9 6 5.4672 4.7695 3.0363 10 16 6.2508 3.9825 4.4656 11 6 7.1894 5.3388 5.0852 12 1 7.1541 6.2942 4.5830 13 6 7.9750 5.1790 6.2183 14 7 8.0184 4.0144 6.8302 15 14 8.9707 6.6167 6.8749 16 1 8.1533 7.3796 7.8522 17 1 10.1944 6.1068 7.5441 18 1 9.3559 7.5067 5.7502 19 6 2.2989 3.4151 -0.5897 20 6 2.1808 4.6746 -1.3484 21 7 1.3918 4.7326 -2.4396 22 8 2.7953 5.6605 -0.9893 23 7 1.6978 2.2739 -0.8661 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.3175 1.3796 1.7508 30 1 3.9726 5.0395 0.8920 31 1 6.2365 5.1258 2.3512 32 1 4.8609 5.6110 3.3715 33 1 8.5677 3.9026 7.6219 34 1 0.9014 3.9462 -2.7257 35 1 1.3139 5.5609 -2.9382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320977963.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:30 Heat of formation + Delta-G solvation = -28.892367 kcal Electronic energy + Delta-G solvation = -20988.849040 eV Core-core repulsion = 17534.626204 eV Total energy + Delta-G solvation = -3454.222836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.78624 -40.76491 -40.20309 -36.31244 -35.19903 -34.58435 -34.40372 -31.91051 -31.06917 -29.58901 -27.65451 -26.07012 -23.85168 -22.87239 -21.54330 -21.13611 -19.75979 -19.21229 -18.13466 -17.83612 -17.44451 -17.31579 -16.88071 -16.83431 -16.46160 -15.95002 -15.67072 -15.29199 -14.91933 -14.86020 -14.50961 -14.21041 -13.92116 -13.43514 -13.16416 -12.96357 -12.89299 -12.66016 -12.48132 -12.11715 -11.93749 -11.73242 -11.52741 -11.13937 -11.05425 -10.76821 -10.31723 -10.27128 -9.15145 -8.65681 -8.34990 -6.12322 0.37008 0.79907 1.16443 1.37054 1.43052 1.48177 1.57976 1.65740 2.11664 2.26712 2.31487 2.53737 2.99468 3.20655 3.33438 3.74383 3.92009 3.97179 4.05739 4.21976 4.24107 4.36803 4.46547 4.50374 4.71707 4.83259 4.91919 5.25688 5.43113 5.44406 5.74977 5.84664 6.20347 6.27349 6.29940 6.78649 7.00284 7.06943 7.23280 8.74132 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.003259 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.368064 B = 8590.475902 C = 9733.579825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.106 3.894 3 N -0.261 5.261 4 C -0.040 4.040 5 C 0.063 3.937 6 N -0.626 5.626 7 C 0.535 3.465 8 O -0.535 6.535 9 C -0.130 4.130 10 S -0.130 6.130 11 C -0.551 4.551 12 H 0.081 0.919 13 C 0.016 3.984 14 N -0.909 5.909 15 Si 0.997 3.003 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.063 4.063 20 C 0.612 3.388 21 N -0.816 5.816 22 O -0.576 6.576 23 N -0.227 5.227 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.197 0.803 30 H 0.427 0.573 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.272 0.728 34 H 0.419 0.581 35 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.978 -5.358 -19.667 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.012 4.012 3 N -0.053 5.053 4 C -0.184 4.184 5 C -0.043 4.043 6 N -0.273 5.273 7 C 0.323 3.677 8 O -0.411 6.411 9 C -0.281 4.281 10 S 0.097 5.903 11 C -0.698 4.698 12 H 0.099 0.901 13 C -0.189 4.189 14 N -0.546 5.546 15 Si 0.819 3.181 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.223 4.223 20 C 0.395 3.605 21 N -0.380 5.380 22 O -0.454 6.454 23 N -0.067 5.067 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.069 0.931 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.214 0.786 30 H 0.267 0.733 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.250 0.750 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.349 -7.385 -19.218 26.923 hybrid contribution 1.149 2.650 0.315 2.906 sum -16.199 -4.735 -18.903 25.340 Atomic orbital electron populations 1.22071 0.91959 1.04930 1.02905 1.22550 0.97411 0.74158 1.07082 1.45943 1.30907 1.11415 1.17021 1.23231 1.00872 0.94235 1.00111 1.17955 0.99126 0.91101 0.96084 1.42884 1.43323 1.14654 1.26455 1.20206 0.79426 0.88500 0.79581 1.90549 1.63893 1.21396 1.65278 1.23335 1.01706 1.01367 1.01731 1.85376 1.57026 1.19503 1.28384 1.23225 1.32116 0.98514 1.15978 0.90051 1.26078 0.97306 0.99758 0.95734 1.70163 1.39447 1.25197 1.19746 0.84974 0.77326 0.77321 0.78497 1.19311 1.20137 1.18431 1.21526 1.05974 0.95025 0.99760 1.16771 0.78783 0.84507 0.80419 1.43362 1.47692 1.18717 1.28220 1.90780 1.48194 1.36634 1.69805 1.73252 1.20891 0.96874 1.15642 0.91286 0.87463 0.93109 0.86481 0.86033 0.78586 0.73323 0.87069 0.87051 0.91911 0.74989 0.74919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.02 71.98 0.72 -0.67 16 2 C 0.11 1.17 7.12 86.38 0.62 1.79 16 3 N -0.26 -5.45 3.42 -346.83 -1.19 -6.64 16 4 C -0.04 -1.13 10.31 83.55 0.86 -0.27 16 5 C 0.06 1.96 7.00 38.15 0.27 2.22 16 6 N -0.63 -20.83 5.44 -302.95 -1.65 -22.48 16 7 C 0.54 21.02 7.82 87.66 0.69 21.70 16 8 O -0.53 -23.59 13.16 -3.08 -0.04 -23.63 16 9 C -0.13 -5.42 6.16 71.24 0.44 -4.98 16 10 S -0.13 -7.18 20.57 -56.49 -1.16 -8.34 16 11 C -0.55 -31.69 9.50 67.95 0.65 -31.05 16 12 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 13 C 0.02 0.93 5.49 84.86 0.47 1.40 16 14 N -0.91 -55.51 13.22 21.65 0.29 -55.23 16 15 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 19 C -0.06 -1.66 7.14 42.48 0.30 -1.35 16 20 C 0.61 14.88 8.09 86.69 0.70 15.58 16 21 N -0.82 -11.49 8.87 -175.83 -1.56 -13.05 16 22 O -0.58 -17.61 16.19 -3.99 -0.06 -17.67 16 23 N -0.23 -4.95 11.35 -48.02 -0.55 -5.50 16 24 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 25 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.05 0.60 8.14 -2.38 -0.02 0.59 16 27 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.12 1.05 8.04 -2.39 -0.02 1.03 16 29 H 0.20 6.05 6.02 -2.91 -0.02 6.03 16 30 H 0.43 13.25 7.14 -92.71 -0.66 12.59 16 31 H 0.11 4.26 8.14 -2.40 -0.02 4.24 16 32 H 0.11 4.26 8.14 -2.39 -0.02 4.24 16 33 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 34 H 0.42 4.10 8.55 -92.71 -0.79 3.30 16 35 H 0.42 4.20 8.93 -92.71 -0.83 3.37 16 Total: -1.00 -78.62 325.34 0.70 -77.92 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -1.11 Total: 24.25 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.70 Total: 4.36 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.66 Total: -102.89 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.11 Total: -41.30 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -7.18 SS G_CDS: -1.16 Total: -8.34 kcal Total: -78.62 0.70 -77.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320977963.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.025 kcal (2) G-P(sol) polarization free energy of solvation -78.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds