Wall clock time and date at job start Tue Mar 31 2020 03:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 N 1.46497 * 109.47171 * 269.99729 * 6 5 4 8 8 C 1.34770 * 120.00108 * 179.97438 * 7 6 5 9 9 O 1.21583 * 120.00391 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00220 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00290 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47075 * 180.02562 * 11 10 8 13 13 O 1.21293 * 120.00526 * 359.97438 * 12 11 10 14 14 N 1.34785 * 119.99982 * 179.97438 * 12 11 10 15 15 C 1.37091 * 119.99834 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00461 * 0.02562 * 15 14 12 17 17 C 1.38957 * 119.99692 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00160 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47391 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46880 * 120.00346 * 19 17 15 22 22 H 1.48495 * 109.47254 * 240.00034 * 19 17 15 23 23 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 24 24 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 27 27 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 28 28 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 29 29 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 30 30 H 0.97001 * 119.99970 * 0.02562 * 7 6 5 31 31 H 0.97001 * 119.99858 * 0.02562 * 10 8 7 32 32 H 1.09003 * 109.47362 * 300.00097 * 11 10 8 33 33 H 1.08992 * 109.47240 * 60.00022 * 11 10 8 34 34 H 0.97000 * 120.00008 * 0.02562 * 14 12 11 35 35 H 0.96998 * 119.99893 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 7 4.7994 -2.4912 -1.3975 8 6 5.6607 -3.4965 -1.6498 9 8 6.1754 -4.1016 -0.7294 10 7 5.9518 -3.8312 -2.9226 11 6 6.8877 -4.9244 -3.1969 12 6 7.0392 -5.0940 -4.6865 13 8 6.4255 -4.3730 -5.4447 14 7 7.8568 -6.0469 -5.1766 15 6 7.9942 -6.2015 -6.5318 16 1 7.4478 -5.5596 -7.2068 17 6 8.8368 -7.1843 -7.0370 18 7 9.5014 -7.9658 -6.2158 19 14 9.0246 -7.3946 -8.8836 20 1 8.1760 -6.3975 -9.5843 21 1 10.4455 -7.1886 -9.2633 22 1 8.6023 -8.7644 -9.2714 23 7 2.2199 -1.1083 -0.0065 24 1 -0.3633 -0.0048 1.0277 25 1 -0.3633 -0.8876 -0.5180 26 1 -0.3633 0.8924 -0.5097 27 1 1.8392 2.1308 0.0006 28 1 5.3966 -1.8274 0.5003 29 1 4.0439 -2.9843 0.4958 30 1 4.3891 -2.0082 -2.1319 31 1 5.5415 -3.3482 -3.6570 32 1 7.8576 -4.6912 -2.7576 33 1 6.5049 -5.8479 -2.7627 34 1 8.3474 -6.6237 -4.5704 35 1 10.0892 -8.6520 -6.5685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322802030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:02 Heat of formation + Delta-G solvation = -22.925816 kcal Electronic energy + Delta-G solvation = -20283.028342 eV Core-core repulsion = 16829.064235 eV Total energy + Delta-G solvation = -3453.964107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37720 -39.74423 -38.20743 -35.26374 -34.39276 -33.65635 -32.27178 -31.36287 -28.85929 -27.93485 -26.82958 -24.43528 -22.90917 -20.81102 -20.11731 -19.59115 -18.68411 -18.12811 -17.74650 -16.49051 -15.76378 -15.63272 -15.32520 -15.14291 -14.62945 -14.46028 -14.29118 -13.99682 -13.80313 -13.55228 -13.28942 -12.88152 -12.74609 -12.70799 -12.17843 -11.88331 -11.67138 -11.62736 -11.13745 -10.40434 -10.32664 -10.18191 -10.02773 -9.80229 -9.64009 -9.27324 -9.13461 -8.65073 -8.61989 -8.09209 -6.50716 -3.92591 0.22484 0.95983 1.35788 2.26763 2.89825 3.10815 3.23112 3.29907 3.34383 3.61683 3.75852 4.09674 4.40504 4.50755 4.74862 4.85594 4.90404 5.10439 5.18122 5.21442 5.27498 5.42365 5.54157 5.85575 5.91277 6.01134 6.08637 6.30289 6.72720 6.99733 7.35658 7.47046 7.93432 8.16807 8.46021 8.72898 9.05617 9.40444 9.88293 10.66266 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.033647 B = 0.002302 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.967559 B =12159.690407 C =12485.534153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.064 3.936 3 C -0.261 4.261 4 S 0.148 5.852 5 C 0.028 3.972 6 C 0.221 3.779 7 N -0.745 5.745 8 C 0.709 3.291 9 O -0.595 6.595 10 N -0.722 5.722 11 C 0.128 3.872 12 C 0.429 3.571 13 O -0.598 6.598 14 N -0.549 5.549 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.894 5.894 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 N -0.453 5.453 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.178 0.822 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.399 0.601 31 H 0.407 0.593 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.396 0.604 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.642 16.689 13.615 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C -0.400 4.400 4 S 0.403 5.597 5 C -0.250 4.250 6 C 0.093 3.907 7 N -0.403 5.403 8 C 0.409 3.591 9 O -0.473 6.473 10 N -0.379 5.379 11 C 0.000 4.000 12 C 0.214 3.786 13 O -0.484 6.484 14 N -0.184 5.184 15 C -0.433 4.433 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.206 1.206 23 N -0.168 5.168 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.196 0.804 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.233 0.767 31 H 0.245 0.755 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.655 16.428 13.904 24.475 hybrid contribution -0.853 -0.007 -1.193 1.466 sum -12.507 16.421 12.711 24.242 Atomic orbital electron populations 1.20382 0.86877 1.03574 1.03075 1.20375 0.98474 0.86367 1.01595 1.26965 0.95479 1.04162 1.13390 1.84159 1.06731 1.02302 1.66535 1.26991 0.94102 0.98538 1.05366 1.19490 0.94475 0.92768 0.83930 1.44933 1.49598 1.38124 1.07650 1.15720 0.79621 0.80204 0.83574 1.90920 1.56815 1.55808 1.43791 1.44748 1.48999 1.38118 1.06047 1.20804 0.93606 0.90135 0.95439 1.19765 0.85016 0.84894 0.88893 1.90494 1.50718 1.48069 1.59169 1.41795 1.38584 1.29771 1.08287 1.19772 1.25003 1.16580 0.81983 0.87647 1.25331 0.96056 0.95749 1.00652 1.69622 1.28196 1.20292 1.35348 0.85758 0.78164 0.78305 0.81857 1.19155 1.20626 1.20618 1.66149 1.04434 1.31796 1.14450 0.90539 0.90349 0.90632 0.80421 0.89193 0.88455 0.76727 0.75522 0.89885 0.89885 0.76996 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.31 36.01 0.37 -0.13 16 2 C 0.06 0.58 6.74 -84.22 -0.57 0.01 16 3 C -0.26 -1.93 11.13 29.12 0.32 -1.61 16 4 S 0.15 1.17 23.18 -107.50 -2.49 -1.32 16 5 C 0.03 0.28 6.76 -13.46 -0.09 0.19 16 6 C 0.22 2.41 6.25 -5.20 -0.03 2.38 16 7 N -0.74 -9.20 5.55 -66.42 -0.37 -9.57 16 8 C 0.71 11.43 8.57 -86.92 -0.74 10.69 16 9 O -0.59 -11.38 16.34 5.29 0.09 -11.30 16 10 N -0.72 -12.14 5.53 -66.42 -0.37 -12.50 16 11 C 0.13 2.38 6.15 -5.20 -0.03 2.35 16 12 C 0.43 9.83 7.85 -10.98 -0.09 9.75 16 13 O -0.60 -15.29 15.24 5.55 0.08 -15.21 16 14 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 15 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 16 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 18 N -0.89 -23.91 13.05 55.50 0.72 -23.18 16 19 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 N -0.45 -5.04 10.53 -8.06 -0.08 -5.12 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 27 H 0.18 0.83 8.06 -52.49 -0.42 0.40 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.40 4.31 8.48 -40.82 -0.35 3.96 16 31 H 0.41 6.70 7.45 -40.82 -0.30 6.39 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.40 9.45 7.90 -40.82 -0.32 9.12 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -32.61 328.85 -7.51 -40.12 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -3.86 Total: 15.52 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: -1.10 Total: 15.78 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.15 Total: -64.07 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.17 Total: -26.51 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.61 -7.51 -40.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322802030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.194 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds