Wall clock time and date at job start Tue Mar 31 2020 03:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 N 1.46497 * 109.47171 * 269.99729 * 6 5 4 8 8 C 1.34770 * 120.00108 * 179.97438 * 7 6 5 9 9 O 1.21583 * 120.00391 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00220 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00290 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47075 * 180.02562 * 11 10 8 13 13 O 1.21293 * 120.00526 * 359.97438 * 12 11 10 14 14 N 1.34785 * 119.99982 * 179.97438 * 12 11 10 15 15 C 1.37091 * 119.99834 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00461 * 0.02562 * 15 14 12 17 17 C 1.38957 * 119.99692 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00160 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47391 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46880 * 120.00346 * 19 17 15 22 22 H 1.48495 * 109.47254 * 240.00034 * 19 17 15 23 23 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 24 24 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 27 27 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 28 28 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 29 29 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 30 30 H 0.97001 * 119.99970 * 0.02562 * 7 6 5 31 31 H 0.97001 * 119.99858 * 0.02562 * 10 8 7 32 32 H 1.09003 * 109.47362 * 300.00097 * 11 10 8 33 33 H 1.08992 * 109.47240 * 60.00022 * 11 10 8 34 34 H 0.97000 * 120.00008 * 0.02562 * 14 12 11 35 35 H 0.96998 * 119.99893 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 7 4.7994 -2.4912 -1.3975 8 6 5.6607 -3.4965 -1.6498 9 8 6.1754 -4.1016 -0.7294 10 7 5.9518 -3.8312 -2.9226 11 6 6.8877 -4.9244 -3.1969 12 6 7.0392 -5.0940 -4.6865 13 8 6.4255 -4.3730 -5.4447 14 7 7.8568 -6.0469 -5.1766 15 6 7.9942 -6.2015 -6.5318 16 1 7.4478 -5.5596 -7.2068 17 6 8.8368 -7.1843 -7.0370 18 7 9.5014 -7.9658 -6.2158 19 14 9.0246 -7.3946 -8.8836 20 1 8.1760 -6.3975 -9.5843 21 1 10.4455 -7.1886 -9.2633 22 1 8.6023 -8.7644 -9.2714 23 7 2.2199 -1.1083 -0.0065 24 1 -0.3633 -0.0048 1.0277 25 1 -0.3633 -0.8876 -0.5180 26 1 -0.3633 0.8924 -0.5097 27 1 1.8392 2.1308 0.0006 28 1 5.3966 -1.8274 0.5003 29 1 4.0439 -2.9843 0.4958 30 1 4.3891 -2.0082 -2.1319 31 1 5.5415 -3.3482 -3.6570 32 1 7.8576 -4.6912 -2.7576 33 1 6.5049 -5.8479 -2.7627 34 1 8.3474 -6.6237 -4.5704 35 1 10.0892 -8.6520 -6.5685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322802030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:01 Heat of formation + Delta-G solvation = -48.950754 kcal Electronic energy + Delta-G solvation = -20284.156868 eV Core-core repulsion = 16829.064235 eV Total energy + Delta-G solvation = -3455.092633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35090 -40.82673 -39.99772 -36.42327 -36.10197 -35.28148 -33.38024 -32.99425 -29.97059 -28.64905 -28.10231 -26.25139 -23.71086 -22.08281 -21.36197 -20.78809 -20.13986 -19.77905 -18.65530 -17.62671 -17.41507 -16.96721 -16.56159 -16.20698 -16.08464 -15.85012 -15.69048 -15.17020 -15.05830 -14.79044 -14.13549 -13.93708 -13.79731 -13.54332 -13.42822 -13.32945 -13.23907 -12.90353 -12.43683 -12.24989 -12.10789 -11.57129 -11.55110 -10.74233 -10.54923 -10.51412 -10.45175 -10.09721 -9.90877 -9.76641 -8.50251 -6.00224 -0.44832 0.31702 0.72235 1.35827 1.39937 1.44813 1.57996 1.86880 1.90502 2.06747 2.29563 2.90039 3.05648 3.17085 3.31292 3.79025 4.21874 4.24070 4.29821 4.34135 4.44982 4.48584 4.53721 4.77239 4.82246 4.95589 5.23653 5.29555 5.33263 5.39827 5.82382 5.93576 6.49190 6.69833 6.92985 7.04660 7.40943 7.48250 7.95803 8.66901 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.033647 B = 0.002302 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.967559 B =12159.690407 C =12485.534153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.039 3.961 3 C -0.248 4.248 4 S 0.181 5.819 5 C 0.005 3.995 6 C 0.223 3.777 7 N -0.730 5.730 8 C 0.712 3.288 9 O -0.625 6.625 10 N -0.722 5.722 11 C 0.142 3.858 12 C 0.434 3.566 13 O -0.625 6.625 14 N -0.560 5.560 15 C -0.335 4.335 16 H 0.086 0.914 17 C -0.012 4.012 18 N -0.916 5.916 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.272 1.272 23 N -0.480 5.480 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.209 0.791 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.408 0.592 31 H 0.410 0.590 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.074 18.084 13.694 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 C -0.387 4.387 4 S 0.435 5.565 5 C -0.272 4.272 6 C 0.096 3.904 7 N -0.387 5.387 8 C 0.411 3.589 9 O -0.506 6.506 10 N -0.380 5.380 11 C 0.013 3.987 12 C 0.221 3.779 13 O -0.513 6.513 14 N -0.195 5.195 15 C -0.465 4.465 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.197 1.197 23 N -0.197 5.197 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.226 0.774 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.243 0.757 31 H 0.248 0.752 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.107 17.845 14.004 25.713 hybrid contribution -0.780 -0.330 -1.148 1.426 sum -12.886 17.515 12.856 25.261 Atomic orbital electron populations 1.20452 0.85382 1.04100 1.03764 1.20784 0.99649 0.86326 1.02520 1.27387 0.95043 1.05168 1.11143 1.84025 1.06908 1.00122 1.65405 1.26751 0.93863 0.99459 1.07138 1.19498 0.95167 0.93041 0.82731 1.44837 1.48219 1.36815 1.08835 1.15749 0.79832 0.80572 0.82742 1.90900 1.58143 1.57071 1.44462 1.44668 1.48934 1.37859 1.06526 1.20614 0.94840 0.91321 0.91894 1.20433 0.83423 0.83468 0.90597 1.90471 1.51407 1.48773 1.60625 1.41839 1.39368 1.30541 1.07771 1.19759 1.26261 1.17513 0.82942 0.89621 1.26132 0.95209 0.94949 1.04933 1.69685 1.28351 1.20519 1.37050 0.84811 0.78322 0.78310 0.76527 1.19461 1.19621 1.19680 1.66137 1.05118 1.33498 1.14953 0.89738 0.91502 0.88441 0.77420 0.88303 0.89660 0.75684 0.75245 0.88637 0.88908 0.76641 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.31 71.24 0.73 -0.13 16 2 C 0.04 0.65 6.74 41.52 0.28 0.93 16 3 C -0.25 -3.04 11.13 66.78 0.74 -2.30 16 4 S 0.18 2.51 23.18 -56.49 -1.31 1.20 16 5 C 0.00 0.09 6.76 88.52 0.60 0.69 16 6 C 0.22 4.77 6.25 85.63 0.54 5.30 16 7 N -0.73 -17.58 5.55 -482.31 -2.68 -20.25 16 8 C 0.71 22.51 8.57 179.05 1.53 24.05 16 9 O -0.62 -23.62 16.34 -3.98 -0.07 -23.69 16 10 N -0.72 -23.87 5.53 -482.32 -2.67 -26.54 16 11 C 0.14 5.18 6.15 85.63 0.53 5.71 16 12 C 0.43 19.99 7.85 87.65 0.69 20.67 16 13 O -0.62 -32.24 15.24 -3.07 -0.05 -32.29 16 14 N -0.56 -28.08 5.29 -306.98 -1.62 -29.71 16 15 C -0.34 -18.48 9.68 84.04 0.81 -17.66 16 16 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 17 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 18 N -0.92 -48.68 13.05 21.67 0.28 -48.39 16 19 Si 1.00 41.79 29.55 68.60 2.03 43.82 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 23 N -0.48 -10.39 10.53 -179.40 -1.89 -12.28 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.10 0.61 8.12 -2.38 -0.02 0.59 16 27 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.41 8.47 8.48 -92.71 -0.79 7.69 16 31 H 0.41 13.28 7.45 -92.71 -0.69 12.59 16 32 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.40 19.24 7.90 -92.71 -0.73 18.50 16 35 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -69.39 328.85 -2.09 -71.47 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -1.04 Total: 39.53 kcal Atomic # 6 Polarization: 30.20 SS G_CDS: 6.92 Total: 37.12 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -8.58 Total: -137.17 kcal Atomic # 8 Polarization: -55.86 SS G_CDS: -0.11 Total: -55.98 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.31 Total: 1.20 kcal Total: -69.39 -2.09 -71.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322802030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.523 kcal (2) G-P(sol) polarization free energy of solvation -69.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds