Wall clock time and date at job start Tue Mar 31 2020 03:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 110.54463 * 2 1 4 4 O 1.42105 * 110.54052 * 223.25059 * 2 1 3 5 5 C 1.76202 * 104.45024 * 111.62815 * 2 1 3 6 6 C 1.38880 * 120.33466 * 89.99813 * 5 2 1 7 7 C 1.38305 * 118.50194 * 179.97438 * 6 5 2 8 8 C 1.39139 * 119.09902 * 0.02562 * 7 6 5 9 9 N 1.38993 * 119.70560 * 180.02562 * 8 7 6 10 10 C 1.47484 * 110.99947 * 275.96873 * 9 8 7 11 11 C 1.53513 * 87.93201 * 221.29920 * 10 9 8 12 12 O 1.42901 * 114.16785 * 272.37545 * 11 10 9 13 13 C 1.50702 * 114.17037 * 139.67214 * 11 10 9 14 14 H 1.08004 * 119.99673 * 266.15457 * 13 11 10 15 15 C 1.37873 * 120.00063 * 86.15521 * 13 11 10 16 16 N 1.31516 * 120.00166 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00029 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47000 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47029 * 120.00073 * 17 15 13 20 20 H 1.48500 * 109.47307 * 240.00391 * 17 15 13 21 21 C 1.47484 * 110.99950 * 179.97438 * 9 8 7 22 22 N 1.32397 * 120.58622 * 359.97438 * 8 7 6 23 23 C 1.31977 * 121.62330 * 0.02562 * 22 8 7 24 24 H 1.08995 * 109.46963 * 308.37706 * 1 2 3 25 25 H 1.09006 * 109.47134 * 68.37501 * 1 2 3 26 26 H 1.08994 * 109.47699 * 188.37358 * 1 2 3 27 27 H 1.07998 * 120.75276 * 0.25183 * 6 5 2 28 28 H 1.07999 * 120.44559 * 179.97438 * 7 6 5 29 29 H 1.09005 * 113.47555 * 336.06081 * 10 9 8 30 30 H 1.08997 * 113.47882 * 106.52622 * 10 9 8 31 31 H 0.96703 * 113.99652 * 273.83980 * 12 11 10 32 32 H 0.96999 * 119.99978 * 179.97438 * 16 15 13 33 33 H 1.08998 * 113.47230 * 253.46723 * 21 9 8 34 34 H 1.08997 * 113.47572 * 23.93438 * 21 9 8 35 35 H 1.08002 * 119.56941 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4287 -1.9935 1.7758 7 6 2.7741 -2.4457 3.0363 8 6 2.9332 -1.5235 4.0660 9 7 3.2808 -1.9641 5.3376 10 6 2.0887 -2.3936 6.0923 11 6 2.6868 -1.6992 7.3239 12 8 3.5639 -2.5247 8.0927 13 6 1.6800 -0.9535 8.1614 14 1 1.5137 0.1006 7.9947 15 6 0.9712 -1.6169 9.1405 16 7 1.1741 -2.9003 9.3438 17 14 -0.2762 -0.6924 10.1792 18 1 -0.3159 0.7303 9.7554 19 1 -1.6189 -1.3001 9.9977 20 1 0.1142 -0.7726 11.6097 21 6 3.3984 -0.8319 6.2754 22 7 2.7574 -0.2300 3.8450 23 6 2.4276 0.2297 2.6526 24 1 -0.3633 0.6380 0.8056 25 1 -0.3634 0.3787 -0.9554 26 1 -0.3634 -1.0166 0.1496 27 1 2.3023 -2.6856 0.9564 28 1 2.9176 -3.5004 3.2190 29 1 1.1641 -1.9350 5.7415 30 1 2.0091 -3.4754 6.1996 31 1 3.1134 -3.0698 8.7523 32 1 0.6757 -3.3669 10.0328 33 1 4.4284 -0.5907 6.5378 34 1 2.8235 0.0435 5.9734 35 1 2.2921 1.2916 2.5097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328584933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:40 Heat of formation + Delta-G solvation = -24.396302 kcal Electronic energy + Delta-G solvation = -21837.550436 eV Core-core repulsion = 18351.229813 eV Total energy + Delta-G solvation = -3486.320623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87919 -38.63650 -37.27045 -36.11242 -34.61401 -32.53968 -32.19710 -31.21729 -29.76846 -27.61520 -25.42100 -25.01900 -23.47906 -22.07062 -19.25875 -18.88094 -18.07487 -17.62523 -16.83235 -16.41384 -16.22383 -15.57978 -15.22589 -14.83716 -14.53715 -14.28709 -13.83631 -13.51191 -13.48080 -13.37386 -13.23377 -12.85004 -12.26798 -12.18804 -12.13627 -11.81095 -11.55165 -11.41182 -11.13833 -11.08291 -10.90879 -10.50866 -10.30004 -10.08264 -9.72978 -9.45422 -9.36643 -8.79429 -8.47912 -8.09341 -6.40637 -4.50207 -0.12935 0.67964 1.24205 2.69361 3.11395 3.21023 3.25294 3.41560 3.79874 3.90633 4.10060 4.19565 4.48422 4.49087 4.60140 4.76515 4.84151 5.11463 5.17842 5.34826 5.59718 5.62134 5.73500 5.84886 5.88809 6.05119 6.21203 6.40470 6.62530 6.69988 6.75830 7.19433 7.63351 7.67711 7.82811 7.92715 8.53769 9.20662 9.51618 10.65925 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.003709 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.830690 B = 7548.064252 C = 8025.004358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.515 3.485 3 O -0.940 6.940 4 O -0.942 6.942 5 C -0.754 4.754 6 C 0.030 3.970 7 C -0.193 4.193 8 C 0.344 3.656 9 N -0.437 5.437 10 C -0.001 4.001 11 C 0.249 3.751 12 O -0.568 6.568 13 C -0.532 4.532 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.279 1.279 21 C 0.014 3.986 22 N -0.524 5.524 23 C 0.220 3.780 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.392 0.608 32 H 0.273 0.727 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 2.470 -15.223 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.693 3.307 3 O -0.937 6.937 4 O -0.939 6.939 5 C -0.844 4.844 6 C 0.003 3.997 7 C -0.216 4.216 8 C 0.114 3.886 9 N -0.155 5.155 10 C -0.127 4.127 11 C 0.206 3.794 12 O -0.381 6.381 13 C -0.571 4.571 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.539 5.539 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.205 1.205 21 C -0.113 4.113 22 N -0.238 5.238 23 C 0.059 3.941 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.248 0.752 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.487 2.906 -15.463 15.929 hybrid contribution -2.209 -0.368 0.840 2.392 sum -4.695 2.538 -14.622 15.566 Atomic orbital electron populations 1.30237 1.25998 1.12110 1.11720 1.04723 0.77582 0.74437 0.73910 1.93579 1.77359 1.36595 1.86161 1.93568 1.77408 1.61775 1.61159 1.31163 1.25542 1.03979 1.23739 1.21147 0.88378 0.93148 0.96991 1.21733 1.05685 1.01520 0.92653 1.21337 0.84163 0.88247 0.94846 1.66520 1.28205 1.23689 0.97083 1.24919 0.89700 1.02278 0.95790 1.19429 0.86596 0.86716 0.86611 1.86060 1.37680 1.60033 1.54285 1.21570 1.20714 0.96765 1.18007 0.91031 1.25089 0.96713 0.94851 0.96467 1.69285 1.42526 1.08463 1.33612 0.86292 0.80334 0.80058 0.79925 1.19411 1.20725 1.20510 1.24206 1.02462 0.94137 0.90527 1.67930 1.16343 1.16038 1.23467 1.22438 0.86169 0.99495 0.86023 0.84892 0.85175 0.85046 0.83239 0.83695 0.91319 0.90114 0.75182 0.91685 0.90568 0.88046 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.40 10.80 101.05 1.09 -2.31 16 2 S 2.52 23.36 5.81 -107.50 -0.62 22.73 16 3 O -0.94 -11.55 17.14 -57.54 -0.99 -12.54 16 4 O -0.94 -11.41 17.19 -57.54 -0.99 -12.40 16 5 C -0.75 -9.10 5.67 -39.42 -0.22 -9.33 16 6 C 0.03 0.37 9.59 -39.32 -0.38 -0.01 16 7 C -0.19 -2.93 10.00 -39.22 -0.39 -3.32 16 8 C 0.34 6.33 5.85 -155.03 -0.91 5.42 16 9 N -0.44 -9.12 6.41 -182.49 -1.17 -10.29 16 10 C 0.00 -0.03 7.07 -7.48 -0.05 -0.08 16 11 C 0.25 6.09 1.57 -91.22 -0.14 5.94 16 12 O -0.57 -14.82 13.54 -35.23 -0.48 -15.30 16 13 C -0.53 -13.67 8.69 -34.44 -0.30 -13.97 16 14 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 15 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 16 N -0.90 -22.99 11.02 55.43 0.61 -22.38 16 17 Si 0.91 19.61 29.54 -169.99 -5.02 14.59 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.01 0.32 6.80 -7.46 -0.05 0.27 16 22 N -0.52 -9.26 8.20 -12.44 -0.10 -9.36 16 23 C 0.22 3.11 10.62 -17.57 -0.19 2.92 16 24 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.15 1.41 7.65 -52.49 -0.40 1.01 16 28 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.07 1.49 7.85 -51.93 -0.41 1.09 16 30 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.39 10.33 6.33 45.56 0.29 10.62 16 32 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.10 2.19 6.62 -51.93 -0.34 1.84 16 35 H 0.17 1.92 7.57 -52.49 -0.40 1.52 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -32.42 313.13 -9.02 -41.45 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -3.34 Total: 11.56 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.64 Total: -12.77 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.66 Total: -42.04 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -2.45 Total: -40.24 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 23.36 SS G_CDS: -0.62 Total: 22.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.42 -9.02 -41.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328584933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.049 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds