Wall clock time and date at job start Tue Mar 31 2020 03:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 110.54463 * 2 1 4 4 O 1.42105 * 110.54052 * 223.25059 * 2 1 3 5 5 C 1.76202 * 104.45024 * 111.62815 * 2 1 3 6 6 C 1.38880 * 120.33466 * 89.99813 * 5 2 1 7 7 C 1.38305 * 118.50194 * 179.97438 * 6 5 2 8 8 C 1.39139 * 119.09902 * 0.02562 * 7 6 5 9 9 N 1.38993 * 119.70560 * 180.02562 * 8 7 6 10 10 C 1.47484 * 110.99947 * 275.96873 * 9 8 7 11 11 C 1.53513 * 87.93201 * 221.29920 * 10 9 8 12 12 O 1.42901 * 114.16785 * 272.37545 * 11 10 9 13 13 C 1.50702 * 114.17037 * 139.67214 * 11 10 9 14 14 H 1.08004 * 119.99673 * 266.15457 * 13 11 10 15 15 C 1.37873 * 120.00063 * 86.15521 * 13 11 10 16 16 N 1.31516 * 120.00166 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00029 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47000 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47029 * 120.00073 * 17 15 13 20 20 H 1.48500 * 109.47307 * 240.00391 * 17 15 13 21 21 C 1.47484 * 110.99950 * 179.97438 * 9 8 7 22 22 N 1.32397 * 120.58622 * 359.97438 * 8 7 6 23 23 C 1.31977 * 121.62330 * 0.02562 * 22 8 7 24 24 H 1.08995 * 109.46963 * 308.37706 * 1 2 3 25 25 H 1.09006 * 109.47134 * 68.37501 * 1 2 3 26 26 H 1.08994 * 109.47699 * 188.37358 * 1 2 3 27 27 H 1.07998 * 120.75276 * 0.25183 * 6 5 2 28 28 H 1.07999 * 120.44559 * 179.97438 * 7 6 5 29 29 H 1.09005 * 113.47555 * 336.06081 * 10 9 8 30 30 H 1.08997 * 113.47882 * 106.52622 * 10 9 8 31 31 H 0.96703 * 113.99652 * 273.83980 * 12 11 10 32 32 H 0.96999 * 119.99978 * 179.97438 * 16 15 13 33 33 H 1.08998 * 113.47230 * 253.46723 * 21 9 8 34 34 H 1.08997 * 113.47572 * 23.93438 * 21 9 8 35 35 H 1.08002 * 119.56941 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4287 -1.9935 1.7758 7 6 2.7741 -2.4457 3.0363 8 6 2.9332 -1.5235 4.0660 9 7 3.2808 -1.9641 5.3376 10 6 2.0887 -2.3936 6.0923 11 6 2.6868 -1.6992 7.3239 12 8 3.5639 -2.5247 8.0927 13 6 1.6800 -0.9535 8.1614 14 1 1.5137 0.1006 7.9947 15 6 0.9712 -1.6169 9.1405 16 7 1.1741 -2.9003 9.3438 17 14 -0.2762 -0.6924 10.1792 18 1 -0.3159 0.7303 9.7554 19 1 -1.6189 -1.3001 9.9977 20 1 0.1142 -0.7726 11.6097 21 6 3.3984 -0.8319 6.2754 22 7 2.7574 -0.2300 3.8450 23 6 2.4276 0.2297 2.6526 24 1 -0.3633 0.6380 0.8056 25 1 -0.3634 0.3787 -0.9554 26 1 -0.3634 -1.0166 0.1496 27 1 2.3023 -2.6856 0.9564 28 1 2.9176 -3.5004 3.2190 29 1 1.1641 -1.9350 5.7415 30 1 2.0091 -3.4754 6.1996 31 1 3.1134 -3.0698 8.7523 32 1 0.6757 -3.3669 10.0328 33 1 4.4284 -0.5907 6.5378 34 1 2.8235 0.0435 5.9734 35 1 2.2921 1.2916 2.5097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328584933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:40 Heat of formation + Delta-G solvation = -52.046572 kcal Electronic energy + Delta-G solvation = -21838.749441 eV Core-core repulsion = 18351.229813 eV Total energy + Delta-G solvation = -3487.519628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.29767 -40.09796 -38.12628 -36.97364 -36.42507 -34.16551 -33.69708 -32.55199 -30.26182 -29.26101 -27.09220 -26.69477 -24.68158 -23.43228 -20.69879 -20.08449 -19.66570 -18.76412 -18.01847 -17.77407 -17.17451 -17.09692 -16.54094 -16.35446 -16.01684 -15.66144 -15.05645 -14.84378 -14.61469 -14.30694 -13.96369 -13.91144 -13.80740 -13.51847 -13.40634 -13.13155 -13.01532 -12.84718 -12.64254 -12.37431 -12.27966 -12.19952 -11.86273 -11.38000 -11.24803 -10.96713 -10.72537 -10.61655 -10.25039 -9.68040 -8.31113 -6.48556 -0.86317 -0.46552 0.12706 1.40588 1.44742 1.55922 1.89799 2.27614 2.35354 2.75708 2.92051 3.03907 3.16033 3.24742 3.70402 3.79558 3.88411 4.04075 4.13748 4.15830 4.21665 4.33752 4.43303 4.62130 4.65082 4.72723 4.82855 4.91205 5.01582 5.02138 5.30013 5.39885 5.69329 5.89624 6.13108 6.57119 6.70345 7.24930 7.48441 8.75120 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.003709 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.830690 B = 7548.064252 C = 8025.004358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.530 3.470 3 O -0.972 6.972 4 O -0.969 6.969 5 C -0.740 4.740 6 C 0.037 3.963 7 C -0.197 4.197 8 C 0.305 3.695 9 N -0.442 5.442 10 C 0.014 3.986 11 C 0.225 3.775 12 O -0.581 6.581 13 C -0.556 4.556 14 H 0.066 0.934 15 C 0.031 3.969 16 N -0.917 5.917 17 Si 0.970 3.030 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.277 1.277 21 C 0.024 3.976 22 N -0.550 5.550 23 C 0.203 3.797 24 H 0.149 0.851 25 H 0.158 0.842 26 H 0.153 0.847 27 H 0.186 0.814 28 H 0.155 0.845 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.387 0.613 32 H 0.277 0.723 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 2.918 -17.361 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.709 3.291 3 O -0.969 6.969 4 O -0.966 6.966 5 C -0.826 4.826 6 C 0.011 3.989 7 C -0.220 4.220 8 C 0.076 3.924 9 N -0.160 5.160 10 C -0.112 4.112 11 C 0.183 3.817 12 O -0.393 6.393 13 C -0.594 4.594 14 H 0.084 0.916 15 C -0.169 4.169 16 N -0.558 5.558 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.104 4.104 22 N -0.264 5.264 23 C 0.042 3.958 24 H 0.168 0.832 25 H 0.177 0.823 26 H 0.171 0.829 27 H 0.203 0.797 28 H 0.172 0.828 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.242 0.758 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.523 3.351 -17.601 18.479 hybrid contribution -1.617 -0.453 1.283 2.113 sum -6.141 2.899 -16.318 17.675 Atomic orbital electron populations 1.30042 1.19378 1.14297 1.14138 1.04475 0.79774 0.72885 0.71950 1.93541 1.79780 1.37725 1.85889 1.93535 1.79746 1.62316 1.61052 1.31728 1.22690 1.03642 1.24525 1.21600 0.86561 0.94010 0.96722 1.21913 1.05446 1.01599 0.93001 1.21303 0.87472 0.89400 0.94248 1.66462 1.28114 1.23145 0.98270 1.24529 0.90192 1.01269 0.95210 1.19715 0.87129 0.87550 0.87277 1.86039 1.38446 1.60299 1.54510 1.21759 1.21644 0.96774 1.19236 0.91570 1.25803 0.98229 0.95609 0.97275 1.69347 1.43084 1.09409 1.33959 0.85316 0.78200 0.78811 0.78166 1.19291 1.19973 1.20261 1.24009 1.01497 0.94456 0.90478 1.67785 1.17040 1.15985 1.25632 1.22869 0.86327 1.00965 0.85592 0.83217 0.82347 0.82897 0.79704 0.82765 0.91600 0.90902 0.75775 0.91293 0.91525 0.87962 0.79122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -3.21 10.80 113.37 1.22 -1.99 16 2 S 2.53 39.14 5.81 -56.49 -0.33 38.81 16 3 O -0.97 -21.81 17.14 -127.65 -2.19 -24.00 16 4 O -0.97 -20.66 17.19 -127.65 -2.19 -22.85 16 5 C -0.74 -16.14 5.67 22.37 0.13 -16.02 16 6 C 0.04 0.83 9.59 22.44 0.22 1.05 16 7 C -0.20 -5.80 10.00 22.50 0.23 -5.58 16 8 C 0.30 11.30 5.85 133.07 0.78 12.07 16 9 N -0.44 -18.99 6.41 -731.65 -4.69 -23.68 16 10 C 0.01 0.65 7.07 83.62 0.59 1.24 16 11 C 0.22 11.40 1.57 -11.18 -0.02 11.38 16 12 O -0.58 -31.50 13.54 -148.98 -2.02 -33.52 16 13 C -0.56 -29.25 8.69 25.60 0.22 -29.03 16 14 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 15 C 0.03 1.58 5.40 84.65 0.46 2.04 16 16 N -0.92 -47.60 11.02 21.45 0.24 -47.36 16 17 Si 0.97 40.25 29.54 68.60 2.03 42.27 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 20 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 21 C 0.02 1.09 6.80 83.63 0.57 1.66 16 22 N -0.55 -19.52 8.20 -193.27 -1.59 -21.11 16 23 C 0.20 5.48 10.62 84.62 0.90 6.38 16 24 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.19 2.79 7.65 -2.91 -0.02 2.77 16 28 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 29 H 0.07 2.95 7.85 -2.38 -0.02 2.93 16 30 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.39 21.21 6.33 -74.06 -0.47 20.74 16 32 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 33 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.10 4.60 6.62 -2.39 -0.02 4.58 16 35 H 0.19 4.08 7.57 -2.91 -0.02 4.06 16 Total: -1.00 -72.04 313.13 -4.79 -76.84 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.66 Total: 31.38 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.29 Total: -16.78 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -6.04 Total: -92.15 kcal Atomic # 8 Polarization: -73.97 SS G_CDS: -6.40 Total: -80.37 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 16 Polarization: 39.14 SS G_CDS: -0.33 Total: 38.81 kcal Total: -72.04 -4.79 -76.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328584933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.789 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds