Wall clock time and date at job start Tue Mar 31 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50706 * 125.69380 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46784 * 90.02562 * 6 5 4 8 8 C 1.34784 * 120.00129 * 179.97438 * 7 6 5 9 9 O 1.21346 * 119.99637 * 0.02562 * 8 7 6 10 10 C 1.49448 * 120.00308 * 179.97438 * 8 7 6 11 11 O 1.21346 * 120.00055 * 0.02562 * 10 8 7 12 12 N 1.34772 * 119.99969 * 180.02562 * 10 8 7 13 13 C 1.46501 * 120.00145 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.47373 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47259 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00320 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99765 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47258 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47102 * 120.00444 * 19 17 15 22 22 H 1.48504 * 109.46992 * 239.99850 * 19 17 15 23 23 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 24 24 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 25 25 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 26 26 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 27 27 H 1.09000 * 109.46855 * 210.02522 * 6 5 4 28 28 H 1.08998 * 109.47319 * 330.02983 * 6 5 4 29 29 H 0.97000 * 120.00231 * 359.97438 * 7 6 5 30 30 H 0.97000 * 119.99979 * 0.02562 * 12 10 8 31 31 H 1.09005 * 109.46841 * 300.00152 * 13 12 10 32 32 H 1.09003 * 109.47208 * 59.99921 * 13 12 10 33 33 H 1.09000 * 109.46758 * 299.99926 * 14 13 12 34 34 H 1.09003 * 109.47090 * 59.99761 * 14 13 12 35 35 H 0.96997 * 120.00530 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0166 7 7 5.7817 -1.0148 1.3998 8 6 7.0377 -1.4338 1.6516 9 8 7.7889 -1.6859 0.7325 10 6 7.5057 -1.5869 3.0626 11 8 6.7547 -1.3344 3.9817 12 7 8.7619 -2.0054 3.3144 13 6 9.2205 -2.1560 4.6976 14 6 10.6721 -2.6394 4.7039 15 6 11.1440 -2.7936 6.1267 16 1 10.4753 -2.5697 6.9447 17 6 12.4291 -3.2216 6.3842 18 7 13.2432 -3.4948 5.3882 19 14 13.0137 -3.4136 8.1480 20 1 11.9147 -3.0462 9.0766 21 1 13.4122 -4.8241 8.3867 22 1 14.1791 -2.5236 8.3828 23 16 2.5060 -1.3906 0.0078 24 1 -0.3635 -0.0004 -1.0276 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8901 0.5135 27 1 5.3879 -1.8249 -0.4943 28 1 5.9511 -0.1364 -0.4971 29 1 5.1813 -0.8130 2.1345 30 1 9.3623 -2.2069 2.5797 31 1 9.1556 -1.1952 5.2085 32 1 8.5925 -2.8838 5.2114 33 1 10.7373 -3.5999 4.1929 34 1 11.2998 -1.9111 4.1902 35 1 14.1474 -3.7955 5.5693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346435289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:46 Heat of formation + Delta-G solvation = -41.087994 kcal Electronic energy + Delta-G solvation = -20161.077855 eV Core-core repulsion = 16706.326177 eV Total energy + Delta-G solvation = -3454.751678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.51348 -41.73502 -39.72555 -37.11844 -36.41291 -34.84898 -34.04426 -31.71587 -31.19117 -28.31670 -27.19182 -25.80663 -24.52313 -22.82511 -21.65780 -21.14515 -20.49352 -19.66202 -18.59744 -18.01737 -17.23126 -17.16358 -16.72926 -16.45037 -16.39887 -16.02924 -15.67442 -15.00297 -14.88318 -14.45573 -14.40907 -14.31490 -13.92061 -13.80343 -13.34546 -13.25266 -12.96407 -12.92090 -12.51448 -12.29436 -11.69198 -11.60642 -11.42483 -11.34959 -11.09353 -10.73696 -10.66491 -10.62208 -10.54264 -10.21708 -8.23392 -6.34267 -0.79769 -0.22345 0.21239 0.25095 1.09003 1.42463 1.43300 1.50794 1.56903 2.05661 2.39509 2.61246 2.72955 3.11697 3.35158 3.41376 3.70494 4.07477 4.32215 4.38622 4.39339 4.45611 4.61234 4.70327 4.81699 4.83401 5.06238 5.06819 5.42670 5.55744 5.72643 5.80525 6.13254 6.25339 6.58761 6.79079 6.87589 7.35264 7.38666 8.88729 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.044224 B = 0.002183 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.990104 B =12824.172001 C =13134.007288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.015 4.015 3 N -0.304 5.304 4 N -0.269 5.269 5 C -0.066 4.066 6 C 0.204 3.796 7 N -0.689 5.689 8 C 0.525 3.475 9 O -0.529 6.529 10 C 0.502 3.498 11 O -0.549 6.549 12 N -0.686 5.686 13 C 0.137 3.863 14 C 0.018 3.982 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.927 5.927 19 Si 0.967 3.033 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.279 1.279 23 S 0.265 5.735 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.106 0.894 29 H 0.418 0.582 30 H 0.416 0.584 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.010 0.990 34 H 0.008 0.992 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.729 2.292 -13.856 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.292 4.292 3 N -0.143 5.143 4 N -0.108 5.108 5 C -0.345 4.345 6 C 0.078 3.922 7 N -0.344 5.344 8 C 0.305 3.695 9 O -0.405 6.405 10 C 0.282 3.718 11 O -0.428 6.428 12 N -0.337 5.337 13 C 0.015 3.985 14 C -0.020 4.020 15 C -0.582 4.582 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.567 5.567 19 Si 0.792 3.208 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.205 1.205 23 S 0.509 5.491 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.115 0.885 27 H 0.141 0.859 28 H 0.123 0.877 29 H 0.255 0.745 30 H 0.253 0.747 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.028 0.972 34 H 0.026 0.974 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.500 2.577 -13.915 30.041 hybrid contribution 0.861 0.212 0.747 1.160 sum -25.639 2.789 -13.167 28.957 Atomic orbital electron populations 1.20708 0.80965 1.06272 1.06083 1.30082 1.06341 0.92002 1.00804 1.71505 0.96848 1.28494 1.17481 1.71445 1.07523 1.18533 1.13289 1.29020 1.03739 0.93483 1.08288 1.19834 0.85402 1.03959 0.82979 1.45616 1.13027 1.66186 1.09595 1.19844 0.82641 0.78161 0.88848 1.90785 1.54517 1.49281 1.45908 1.20199 0.83090 0.78963 0.89508 1.90734 1.54878 1.50574 1.46591 1.46050 1.12789 1.63908 1.10947 1.21496 0.96424 1.00663 0.79946 1.19187 0.89942 0.95855 0.96995 1.21479 0.98267 1.45473 0.92963 0.91735 1.25913 0.96933 0.94765 1.01855 1.70075 1.07341 1.46177 1.33112 0.85361 0.78331 0.77821 0.79301 1.18641 1.20358 1.20479 1.83593 0.94459 1.08765 1.62273 0.86999 0.86968 0.88520 0.85876 0.87650 0.74486 0.74734 0.92121 0.91804 0.97181 0.97383 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.48 71.23 0.75 0.40 16 2 C -0.01 -0.19 7.53 88.46 0.67 0.47 16 3 N -0.30 -6.52 11.66 -50.85 -0.59 -7.12 16 4 N -0.27 -6.19 11.66 -50.85 -0.59 -6.78 16 5 C -0.07 -1.13 6.90 88.47 0.61 -0.52 16 6 C 0.20 3.40 6.27 85.64 0.54 3.94 16 7 N -0.69 -14.53 5.54 -468.13 -2.59 -17.12 16 8 C 0.52 14.31 7.89 87.27 0.69 15.00 16 9 O -0.53 -16.06 16.48 -3.24 -0.05 -16.11 16 10 C 0.50 16.43 7.89 87.27 0.69 17.12 16 11 O -0.55 -19.98 16.48 -3.24 -0.05 -20.03 16 12 N -0.69 -24.19 5.55 -464.41 -2.58 -26.77 16 13 C 0.14 5.65 5.61 86.38 0.48 6.14 16 14 C 0.02 0.88 5.09 29.85 0.15 1.03 16 15 C -0.54 -29.76 9.11 25.60 0.23 -29.53 16 16 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 17 C 0.00 0.22 5.46 84.65 0.46 0.69 16 18 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16 19 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 S 0.27 2.73 23.04 -56.49 -1.30 1.42 16 24 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 25 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 26 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.42 8.55 7.94 -92.71 -0.74 7.81 16 30 H 0.42 13.98 7.94 -92.71 -0.74 13.24 16 31 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -71.44 331.99 -0.50 -71.95 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -0.32 Total: 14.74 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.27 Total: 14.74 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -6.07 Total: -111.94 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.11 Total: -36.14 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.30 Total: 1.42 kcal Total: -71.44 -0.50 -71.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346435289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.859 kcal (2) G-P(sol) polarization free energy of solvation -71.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds