Wall clock time and date at job start Tue Mar 31 2020 03:54:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86806 * 120.00184 * 2 1
4 4 H 1.48493 * 109.47122 * 270.00296 * 3 2 1
5 5 H 1.48496 * 109.46700 * 30.00366 * 3 2 1
6 6 H 1.48500 * 109.46926 * 150.00062 * 3 2 1
7 7 C 1.38956 * 119.99937 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1
9 9 N 1.37096 * 119.99811 * 359.97438 * 7 2 1
10 10 C 1.34778 * 119.99970 * 179.97438 * 9 7 2
11 11 O 1.21296 * 119.99688 * 0.02562 * 10 9 7
12 12 C 1.50701 * 120.00015 * 180.02562 * 10 9 7
13 13 N 1.46505 * 109.46708 * 180.02562 * 12 10 9
14 14 C 1.34781 * 119.99511 * 180.02562 * 13 12 10
15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12
16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12
17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13
18 18 C 1.52997 * 109.47212 * 179.97438 * 17 16 14
19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16
20 20 C 1.35143 * 127.24759 * 89.70473 * 19 18 17
21 21 C 1.37804 * 114.75762 * 179.86854 * 20 19 18
22 22 N 1.30081 * 116.88611 * 0.44994 * 21 20 19
23 23 S 1.69606 * 107.14812 * 359.75574 * 22 21 20
24 24 H 0.97001 * 119.99576 * 359.97438 * 1 2 3
25 25 H 0.97000 * 119.99939 * 0.02562 * 9 7 2
26 26 H 1.08994 * 109.46995 * 60.00543 * 12 10 9
27 27 H 1.08994 * 109.46942 * 300.00312 * 12 10 9
28 28 H 0.97003 * 120.00113 * 0.02562 * 13 12 10
29 29 H 0.96996 * 120.00772 * 359.97438 * 16 14 13
30 30 H 1.09002 * 109.47068 * 299.99729 * 17 16 14
31 31 H 1.09001 * 109.47372 * 59.99816 * 17 16 14
32 32 H 1.09002 * 109.47153 * 300.00008 * 18 17 16
33 33 H 1.08998 * 109.47533 * 59.99637 * 18 17 16
34 34 H 1.08004 * 122.62036 * 0.04476 * 20 19 18
35 35 H 1.08003 * 121.55648 * 180.21155 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6178 0.0000
4 1 2.4956 2.0464 -1.4000
5 1 1.4456 2.6526 0.7001
6 1 3.5457 1.4401 0.7000
7 6 2.0089 -1.2034 -0.0005
8 1 3.0889 -1.2034 -0.0001
9 7 1.3233 -2.3907 -0.0005
10 6 1.9972 -3.5579 -0.0016
11 8 3.2101 -3.5579 -0.0021
12 6 1.2436 -4.8630 -0.0022
13 7 2.1957 -5.9765 -0.0027
14 6 1.7464 -7.2472 -0.0038
15 8 0.5510 -7.4693 -0.0039
16 7 2.6222 -8.2715 -0.0037
17 6 2.1338 -9.6528 -0.0054
18 6 3.3237 -10.6145 -0.0056
19 6 2.8214 -12.0353 -0.0068
20 6 2.5440 -12.8039 -1.0832
21 6 2.0996 -14.0740 -0.7862
22 7 1.9910 -14.3797 0.4735
23 16 2.4732 -13.0179 1.3619
24 1 -0.4849 0.8401 0.0004
25 1 0.3533 -2.3906 -0.0005
26 1 0.6167 -4.9201 -0.8920
27 1 0.6173 -4.9212 0.8879
28 1 3.1494 -5.7992 -0.0022
29 1 3.5758 -8.0944 -0.0032
30 1 1.5273 -9.8248 0.8838
31 1 1.5292 -9.8233 -0.8962
32 1 3.9299 -10.4423 -0.8950
33 1 3.9288 -10.4442 0.8849
34 1 2.6640 -12.4512 -2.0969
35 1 1.8493 -14.7813 -1.5631
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001672533116.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:54:59
Heat of formation + Delta-G solvation = -32.060955 kcal
Electronic energy + Delta-G solvation = -20064.888870 eV
Core-core repulsion = 16610.528634 eV
Total energy + Delta-G solvation = -3454.360236 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 298.089 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.93807 -39.18816 -38.23763 -35.91280 -34.42003 -33.68005 -32.96668 -31.38532
-29.47252 -27.44884 -25.26934 -24.33423 -22.87873 -20.87740 -20.24794 -19.60934
-18.58545 -18.08453 -17.84265 -16.44576 -15.94160 -15.84406 -15.58912 -14.86506
-14.72025 -14.64789 -14.27460 -13.94781 -13.92060 -13.56383 -13.42352 -13.12699
-12.49809 -12.32161 -12.19499 -11.87514 -11.64108 -11.29042 -11.13297 -10.82991
-10.46992 -10.33383 -10.12716 -9.87711 -9.64670 -9.26430 -9.10714 -8.65481
-8.64083 -8.11123 -6.52381 -3.94452 0.28298 1.09076 1.50821 2.07862
2.73223 3.10819 3.21419 3.26691 3.34886 3.73883 4.01630 4.11688
4.40166 4.53897 4.54325 4.78696 4.81869 4.88731 5.11651 5.16305
5.30169 5.45359 5.59577 5.63209 5.90203 5.99060 6.06767 6.19198
6.37479 6.71487 7.01277 7.45030 7.91298 8.17771 8.44015 8.73849
9.03609 9.38462 9.86207 10.64454
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.060809 B = 0.001973 C = 0.001952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 460.346360 B =14191.109399 C =14339.624051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.025 3.975
3 Si 0.934 3.066
4 H -0.277 1.277
5 H -0.282 1.282
6 H -0.269 1.269
7 C -0.305 4.305
8 H 0.105 0.895
9 N -0.549 5.549
10 C 0.428 3.572
11 O -0.599 6.599
12 C 0.128 3.872
13 N -0.723 5.723
14 C 0.705 3.295
15 O -0.596 6.596
16 N -0.751 5.751
17 C 0.147 3.853
18 C -0.059 4.059
19 C -0.161 4.161
20 C -0.204 4.204
21 C 0.091 3.909
22 N -0.463 5.463
23 S 0.260 5.740
24 H 0.274 0.726
25 H 0.396 0.604
26 H 0.082 0.918
27 H 0.082 0.918
28 H 0.407 0.593
29 H 0.398 0.602
30 H 0.069 0.931
31 H 0.071 0.929
32 H 0.096 0.904
33 H 0.090 0.910
34 H 0.159 0.841
35 H 0.184 0.816
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.341 -23.062 -1.254 23.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.178 4.178
3 Si 0.760 3.240
4 H -0.203 1.203
5 H -0.208 1.208
6 H -0.193 1.193
7 C -0.435 4.435
8 H 0.123 0.877
9 N -0.184 5.184
10 C 0.214 3.786
11 O -0.485 6.485
12 C 0.000 4.000
13 N -0.381 5.381
14 C 0.405 3.595
15 O -0.475 6.475
16 N -0.408 5.408
17 C 0.021 3.979
18 C -0.099 4.099
19 C -0.292 4.292
20 C -0.239 4.239
21 C -0.107 4.107
22 N -0.283 5.283
23 S 0.412 5.588
24 H 0.084 0.916
25 H 0.230 0.770
26 H 0.100 0.900
27 H 0.100 0.900
28 H 0.244 0.756
29 H 0.232 0.768
30 H 0.088 0.912
31 H 0.089 0.911
32 H 0.114 0.886
33 H 0.109 0.891
34 H 0.176 0.824
35 H 0.201 0.799
Dipole moment (debyes) X Y Z Total
from point charges 4.572 -23.922 0.785 24.368
hybrid contribution 0.799 1.522 -1.933 2.587
sum 5.371 -22.400 -1.148 23.064
Atomic orbital electron populations
1.69616 1.06006 1.28533 1.49261 1.25336 0.95678 0.99950 0.96802
0.85806 0.79213 0.80488 0.78475 1.20277 1.20800 1.19332 1.19726
0.93451 0.81995 1.48294 0.87679 1.41791 1.09510 1.04456 1.62602
1.19761 0.88290 0.85012 0.85549 1.90489 1.13752 1.86870 1.57433
1.20791 0.91205 0.84823 1.03190 1.44766 1.11279 1.03285 1.78740
1.15811 0.85139 0.80556 0.78024 1.90919 1.14042 1.84254 1.58266
1.44956 1.09189 1.04907 1.81712 1.21069 0.94890 0.78784 1.03159
1.20285 0.97994 0.86604 1.04968 1.25252 1.03848 1.01340 0.98750
1.21386 1.06867 0.94060 1.01575 1.22861 0.97347 0.96500 0.93962
1.76815 1.23463 1.19905 1.08162 1.84232 1.58616 1.01813 1.14162
0.91577 0.76997 0.89979 0.89976 0.75559 0.76822 0.91249 0.91088
0.88558 0.89137 0.82394 0.79908
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.72 13.05 55.50 0.72 -23.00 16
2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16
3 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16
4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
7 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16
8 H 0.11 2.94 7.16 -52.48 -0.38 2.57 16
9 N -0.55 -13.47 5.29 -10.96 -0.06 -13.53 16
10 C 0.43 9.68 7.85 -10.98 -0.09 9.59 16
11 O -0.60 -15.03 15.24 5.54 0.08 -14.95 16
12 C 0.13 2.34 6.15 -5.19 -0.03 2.31 16
13 N -0.72 -11.71 5.53 -66.42 -0.37 -12.07 16
14 C 0.71 10.95 8.57 -86.92 -0.74 10.21 16
15 O -0.60 -11.44 16.34 5.29 0.09 -11.35 16
16 N -0.75 -7.99 5.56 -65.22 -0.36 -8.36 16
17 C 0.15 1.33 5.66 -4.04 -0.02 1.31 16
18 C -0.06 -0.35 5.91 -27.89 -0.16 -0.51 16
19 C -0.16 -1.14 5.85 -35.41 -0.21 -1.35 16
20 C -0.20 -1.32 10.17 -40.84 -0.42 -1.74 16
21 C 0.09 0.64 11.27 -18.45 -0.21 0.43 16
22 N -0.46 -4.45 12.09 28.86 0.35 -4.10 16
23 S 0.26 2.17 23.72 -107.50 -2.55 -0.38 16
24 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16
25 H 0.40 9.37 7.90 -40.82 -0.32 9.04 16
26 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16
27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16
28 H 0.41 6.31 7.45 -40.82 -0.30 6.01 16
29 H 0.40 3.12 8.49 -40.82 -0.35 2.78 16
30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16
33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
34 H 0.16 0.70 8.06 -52.48 -0.42 0.27 16
35 H 0.18 0.73 8.06 -52.48 -0.42 0.31 16
LS Contribution 328.57 15.07 4.95 4.95
Total: -1.00 -33.32 328.57 -8.15 -41.48
By element:
Atomic # 1 Polarization: 17.38 SS G_CDS: -3.87 Total: 13.52 kcal
Atomic # 6 Polarization: 14.58 SS G_CDS: -2.12 Total: 12.46 kcal
Atomic # 7 Polarization: -61.35 SS G_CDS: 0.29 Total: -61.06 kcal
Atomic # 8 Polarization: -26.47 SS G_CDS: 0.17 Total: -26.30 kcal
Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal
Atomic # 16 Polarization: 2.17 SS G_CDS: -2.55 Total: -0.38 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -33.32 -8.15 -41.48 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001672533116.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.416 kcal
(2) G-P(sol) polarization free energy of solvation -33.324 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.061 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds