Wall clock time and date at job start Tue Mar 31 2020 03:54:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86806 * 120.00184 * 2 1
4 4 H 1.48493 * 109.47122 * 270.00296 * 3 2 1
5 5 H 1.48496 * 109.46700 * 30.00366 * 3 2 1
6 6 H 1.48500 * 109.46926 * 150.00062 * 3 2 1
7 7 C 1.38956 * 119.99937 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1
9 9 N 1.37096 * 119.99811 * 359.97438 * 7 2 1
10 10 C 1.34778 * 119.99970 * 179.97438 * 9 7 2
11 11 O 1.21296 * 119.99688 * 0.02562 * 10 9 7
12 12 C 1.50701 * 120.00015 * 180.02562 * 10 9 7
13 13 N 1.46505 * 109.46708 * 180.02562 * 12 10 9
14 14 C 1.34781 * 119.99511 * 180.02562 * 13 12 10
15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12
16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12
17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13
18 18 C 1.52997 * 109.47212 * 179.97438 * 17 16 14
19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16
20 20 C 1.35143 * 127.24759 * 89.70473 * 19 18 17
21 21 C 1.37804 * 114.75762 * 179.86854 * 20 19 18
22 22 N 1.30081 * 116.88611 * 0.44994 * 21 20 19
23 23 S 1.69606 * 107.14812 * 359.75574 * 22 21 20
24 24 H 0.97001 * 119.99576 * 359.97438 * 1 2 3
25 25 H 0.97000 * 119.99939 * 0.02562 * 9 7 2
26 26 H 1.08994 * 109.46995 * 60.00543 * 12 10 9
27 27 H 1.08994 * 109.46942 * 300.00312 * 12 10 9
28 28 H 0.97003 * 120.00113 * 0.02562 * 13 12 10
29 29 H 0.96996 * 120.00772 * 359.97438 * 16 14 13
30 30 H 1.09002 * 109.47068 * 299.99729 * 17 16 14
31 31 H 1.09001 * 109.47372 * 59.99816 * 17 16 14
32 32 H 1.09002 * 109.47153 * 300.00008 * 18 17 16
33 33 H 1.08998 * 109.47533 * 59.99637 * 18 17 16
34 34 H 1.08004 * 122.62036 * 0.04476 * 20 19 18
35 35 H 1.08003 * 121.55648 * 180.21155 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6178 0.0000
4 1 2.4956 2.0464 -1.4000
5 1 1.4456 2.6526 0.7001
6 1 3.5457 1.4401 0.7000
7 6 2.0089 -1.2034 -0.0005
8 1 3.0889 -1.2034 -0.0001
9 7 1.3233 -2.3907 -0.0005
10 6 1.9972 -3.5579 -0.0016
11 8 3.2101 -3.5579 -0.0021
12 6 1.2436 -4.8630 -0.0022
13 7 2.1957 -5.9765 -0.0027
14 6 1.7464 -7.2472 -0.0038
15 8 0.5510 -7.4693 -0.0039
16 7 2.6222 -8.2715 -0.0037
17 6 2.1338 -9.6528 -0.0054
18 6 3.3237 -10.6145 -0.0056
19 6 2.8214 -12.0353 -0.0068
20 6 2.5440 -12.8039 -1.0832
21 6 2.0996 -14.0740 -0.7862
22 7 1.9910 -14.3797 0.4735
23 16 2.4732 -13.0179 1.3619
24 1 -0.4849 0.8401 0.0004
25 1 0.3533 -2.3906 -0.0005
26 1 0.6167 -4.9201 -0.8920
27 1 0.6173 -4.9212 0.8879
28 1 3.1494 -5.7992 -0.0022
29 1 3.5758 -8.0944 -0.0032
30 1 1.5273 -9.8248 0.8838
31 1 1.5292 -9.8233 -0.8962
32 1 3.9299 -10.4423 -0.8950
33 1 3.9288 -10.4442 0.8849
34 1 2.6640 -12.4512 -2.0969
35 1 1.8493 -14.7813 -1.5631
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001672533116.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:54:58
Heat of formation + Delta-G solvation = -58.104621 kcal
Electronic energy + Delta-G solvation = -20066.018208 eV
Core-core repulsion = 16610.528634 eV
Total energy + Delta-G solvation = -3455.489574 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 298.089 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.20340 -40.04999 -39.71318 -36.81464 -36.18345 -35.25220 -33.77776 -33.33262
-30.31368 -28.83144 -26.54040 -25.58897 -23.56273 -22.04324 -21.34466 -20.82716
-20.10803 -19.61160 -18.60761 -17.54342 -17.37003 -16.99479 -16.63609 -16.35625
-16.04652 -15.91036 -15.48802 -15.14447 -15.10603 -14.86342 -14.04890 -13.94169
-13.81262 -13.58509 -13.52702 -13.14593 -12.91469 -12.81652 -12.43987 -12.11748
-11.83774 -11.55303 -11.46818 -11.40666 -10.53953 -10.47603 -10.43747 -10.08773
-9.82770 -9.68655 -8.49545 -5.99613 -0.27282 0.53120 0.93925 1.37824
1.43622 1.51319 1.57031 1.67380 1.91677 2.12741 2.29875 3.04714
3.17854 3.30478 3.69139 3.88760 4.00514 4.23297 4.27467 4.33759
4.46326 4.48682 4.59222 4.73662 4.95120 4.99387 5.07407 5.32583
5.40149 5.44330 5.67127 5.92841 5.97735 6.49713 7.05074 7.05299
7.44671 7.54673 7.96212 8.67306
Molecular weight = 298.09amu
Principal moments of inertia in cm(-1)
A = 0.060809 B = 0.001973 C = 0.001952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 460.346360 B =14191.109399 C =14339.624051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C -0.012 4.012
3 Si 0.997 3.003
4 H -0.270 1.270
5 H -0.273 1.273
6 H -0.269 1.269
7 C -0.336 4.336
8 H 0.087 0.913
9 N -0.560 5.560
10 C 0.434 3.566
11 O -0.623 6.623
12 C 0.141 3.859
13 N -0.723 5.723
14 C 0.704 3.296
15 O -0.634 6.634
16 N -0.730 5.730
17 C 0.147 3.853
18 C -0.047 4.047
19 C -0.160 4.160
20 C -0.202 4.202
21 C 0.092 3.908
22 N -0.499 5.499
23 S 0.226 5.774
24 H 0.279 0.721
25 H 0.399 0.601
26 H 0.092 0.908
27 H 0.091 0.909
28 H 0.412 0.588
29 H 0.415 0.585
30 H 0.055 0.945
31 H 0.064 0.936
32 H 0.120 0.880
33 H 0.103 0.897
34 H 0.184 0.816
35 H 0.213 0.787
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.235 -23.361 -2.145 24.273
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.213 4.213
3 Si 0.821 3.179
4 H -0.196 1.196
5 H -0.198 1.198
6 H -0.194 1.194
7 C -0.465 4.465
8 H 0.105 0.895
9 N -0.196 5.196
10 C 0.221 3.779
11 O -0.511 6.511
12 C 0.013 3.987
13 N -0.381 5.381
14 C 0.404 3.596
15 O -0.516 6.516
16 N -0.387 5.387
17 C 0.022 3.978
18 C -0.087 4.087
19 C -0.291 4.291
20 C -0.236 4.236
21 C -0.105 4.105
22 N -0.319 5.319
23 S 0.378 5.622
24 H 0.089 0.911
25 H 0.233 0.767
26 H 0.110 0.890
27 H 0.109 0.891
28 H 0.250 0.750
29 H 0.251 0.749
30 H 0.073 0.927
31 H 0.082 0.918
32 H 0.138 0.862
33 H 0.122 0.878
34 H 0.201 0.799
35 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges 5.499 -24.264 -0.101 24.879
hybrid contribution 0.527 1.508 -1.702 2.334
sum 6.026 -22.756 -1.803 23.609
Atomic orbital electron populations
1.69683 1.07009 1.29593 1.49353 1.26142 0.96547 1.02721 0.95871
0.84859 0.77907 0.76486 0.78681 1.19576 1.19782 1.19405 1.19739
0.92981 0.83517 1.50304 0.89478 1.41845 1.09613 1.04621 1.63493
1.20422 0.88123 0.85888 0.83437 1.90466 1.15118 1.87562 1.57991
1.20576 0.91031 0.83089 1.04031 1.44665 1.11054 1.03185 1.79149
1.15936 0.85098 0.80846 0.77752 1.90897 1.15899 1.84740 1.60022
1.44810 1.09530 1.04474 1.79887 1.21136 0.96209 0.78303 1.02169
1.20241 0.96744 0.84843 1.06840 1.25393 1.03889 1.01672 0.98104
1.21709 1.05751 0.93608 1.02580 1.23424 0.95876 0.97338 0.93835
1.76842 1.25013 1.20684 1.09382 1.84272 1.59768 1.02640 1.15518
0.91113 0.76710 0.89042 0.89148 0.75046 0.74850 0.92700 0.91765
0.86162 0.87817 0.79861 0.77115
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -48.35 13.05 21.66 0.28 -48.07 16
2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16
3 Si 1.00 41.30 29.55 68.60 2.03 43.32 16
4 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16
5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16
6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16
7 C -0.34 -18.27 9.68 84.04 0.81 -17.46 16
8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16
9 N -0.56 -27.73 5.29 -306.97 -1.62 -29.35 16
10 C 0.43 19.58 7.85 87.66 0.69 20.26 16
11 O -0.62 -31.27 15.24 -3.08 -0.05 -31.31 16
12 C 0.14 5.06 6.15 85.63 0.53 5.58 16
13 N -0.72 -22.50 5.53 -482.30 -2.67 -25.17 16
14 C 0.70 20.92 8.57 179.05 1.53 22.45 16
15 O -0.63 -23.83 16.34 -3.98 -0.07 -23.90 16
16 N -0.73 -14.06 5.56 -478.53 -2.66 -16.72 16
17 C 0.15 2.42 5.66 86.38 0.49 2.90 16
18 C -0.05 -0.43 5.91 29.85 0.18 -0.25 16
19 C -0.16 -1.97 5.85 24.97 0.15 -1.82 16
20 C -0.20 -2.12 10.17 21.45 0.22 -1.90 16
21 C 0.09 1.15 11.27 84.85 0.96 2.10 16
22 N -0.50 -9.32 12.09 -62.61 -0.76 -10.07 16
23 S 0.23 3.70 23.72 -56.49 -1.34 2.36 16
24 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16
25 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16
26 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16
27 H 0.09 3.12 8.14 -2.39 -0.02 3.11 16
28 H 0.41 12.20 7.45 -92.71 -0.69 11.51 16
29 H 0.41 5.37 8.49 -92.71 -0.79 4.58 16
30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16
33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16
34 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16
35 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16
Total: -1.00 -71.79 328.57 -1.88 -73.67
By element:
Atomic # 1 Polarization: 34.58 SS G_CDS: -1.04 Total: 33.54 kcal
Atomic # 6 Polarization: 25.70 SS G_CDS: 6.01 Total: 31.71 kcal
Atomic # 7 Polarization: -121.97 SS G_CDS: -7.43 Total: -129.39 kcal
Atomic # 8 Polarization: -55.10 SS G_CDS: -0.11 Total: -55.21 kcal
Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal
Atomic # 16 Polarization: 3.70 SS G_CDS: -1.34 Total: 2.36 kcal
Total: -71.79 -1.88 -73.67 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001672533116.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.566 kcal
(2) G-P(sol) polarization free energy of solvation -71.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.225 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds