Wall clock time and date at job start Tue Mar 31 2020 03:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48500 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47143 * 300.00017 * 3 2 1 6 6 H 1.48495 * 109.47582 * 60.00012 * 3 2 1 7 7 C 1.38630 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 180.02562 * 7 2 1 9 9 O 1.34808 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.35778 * 117.00311 * 174.89882 * 9 7 2 11 11 C 1.38906 * 119.99885 * 5.56206 * 10 9 7 12 12 C 1.38001 * 120.00455 * 180.02562 * 11 10 9 13 13 C 1.38916 * 120.00202 * 359.97438 * 12 11 10 14 14 N 1.40011 * 120.00743 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00050 * 144.65443 * 14 13 12 16 16 O 1.21589 * 120.00460 * 4.32407 * 15 14 13 17 17 N 1.34779 * 120.00018 * 184.32337 * 15 14 13 18 18 C 1.39931 * 120.00212 * 184.54619 * 17 15 14 19 19 C 1.38869 * 120.07024 * 324.12915 * 18 17 15 20 20 C 1.38117 * 119.92697 * 179.81272 * 19 18 17 21 21 C 1.38277 * 120.07235 * 0.43625 * 20 19 18 22 22 C 1.38285 * 120.14082 * 359.79049 * 21 20 19 23 23 C 1.38115 * 120.06916 * 0.02562 * 22 21 20 24 24 C 1.38914 * 119.99198 * 0.25336 * 13 12 11 25 25 C 1.38009 * 120.00285 * 359.51522 * 24 13 12 26 26 H 0.97002 * 120.00039 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99385 * 0.02562 * 11 10 9 28 28 H 1.08005 * 120.00418 * 179.97438 * 12 11 10 29 29 H 0.96999 * 119.99640 * 324.38791 * 14 13 12 30 30 H 0.97004 * 119.99982 * 4.54687 * 17 15 14 31 31 H 1.08002 * 120.03638 * 0.02562 * 19 18 17 32 32 H 1.08003 * 119.96395 * 180.23010 * 20 19 18 33 33 H 1.07998 * 119.93341 * 179.77245 * 21 20 19 34 34 H 1.07995 * 119.96505 * 179.97438 * 22 21 20 35 35 H 1.08004 * 120.03668 * 179.97438 * 23 22 21 36 36 H 1.08002 * 119.99893 * 179.72975 * 24 13 12 37 37 H 1.07999 * 120.00735 * 180.20828 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8911 2.3965 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0701 -3.5044 -0.1086 11 6 3.4575 -3.4377 -0.0964 12 6 4.2049 -4.5925 -0.2068 13 6 3.5698 -5.8219 -0.3296 14 7 4.3280 -6.9935 -0.4422 15 6 3.8904 -8.1363 0.1226 16 8 2.8011 -8.1697 0.6618 17 7 4.6601 -9.2422 0.0896 18 6 4.1679 -10.4524 0.5908 19 6 3.3394 -10.4585 1.7052 20 6 2.8522 -11.6544 2.1951 21 6 3.1958 -12.8455 1.5826 22 6 4.0245 -12.8433 0.4755 23 6 4.5119 -11.6504 -0.0216 24 6 2.1824 -5.8881 -0.3467 25 6 1.4349 -4.7336 -0.2315 26 1 -0.4850 0.8401 0.0004 27 1 3.9513 -2.4820 -0.0004 28 1 5.2837 -4.5406 -0.1977 29 1 5.1664 -6.9837 -0.9300 30 1 5.5553 -9.1992 -0.2816 31 1 3.0736 -9.5288 2.1863 32 1 2.2048 -11.6595 3.0596 33 1 2.8166 -13.7797 1.9698 34 1 4.2914 -13.7752 -0.0004 35 1 5.1594 -11.6493 -0.8860 36 1 1.6885 -6.8434 -0.4466 37 1 0.3562 -4.7854 -0.2413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024689552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:19 Heat of formation + Delta-G solvation = 11.339923 kcal Electronic energy + Delta-G solvation = -22120.402144 eV Core-core repulsion = 18636.020303 eV Total energy + Delta-G solvation = -3484.381841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87591 -39.28067 -38.50443 -36.64996 -34.78912 -34.03415 -32.18922 -31.03484 -30.22262 -29.73477 -27.59944 -25.35729 -23.32063 -22.80054 -22.21754 -21.36000 -20.53361 -18.67379 -18.00674 -17.84202 -17.12976 -16.45106 -15.91984 -15.54176 -14.92457 -14.56418 -14.38764 -14.25532 -14.13844 -13.62789 -13.50219 -13.45927 -12.98256 -12.82582 -12.51253 -11.92523 -11.77963 -11.60730 -11.53628 -11.38502 -11.07161 -10.74263 -10.49779 -10.44685 -9.96439 -9.59740 -9.28132 -9.05364 -8.73999 -8.28011 -8.20870 -6.94468 -6.44725 -4.02897 1.15759 1.28065 2.12749 2.21001 2.56542 3.08861 3.13270 3.17632 3.19042 3.71498 3.96341 4.09140 4.57106 4.73676 4.80782 5.01760 5.09702 5.25601 5.32111 5.38187 5.47026 5.53889 5.76211 5.86115 6.06050 6.12336 6.18382 6.20871 6.29945 6.36954 6.46418 6.66885 6.81929 6.89204 6.93128 7.09522 7.19899 7.23488 7.42415 7.77946 7.89466 7.99811 8.51231 9.00643 9.71266 10.73298 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.045013 B = 0.002511 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.896795 B =11148.332662 C =11519.989824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.148 3.852 11 C -0.220 4.220 12 C -0.089 4.089 13 C 0.048 3.952 14 N -0.668 5.668 15 C 0.698 3.302 16 O -0.558 6.558 17 N -0.690 5.690 18 C 0.167 3.833 19 C -0.119 4.119 20 C -0.102 4.102 21 C -0.141 4.141 22 C -0.104 4.104 23 C -0.150 4.150 24 C -0.065 4.065 25 C -0.178 4.178 26 H 0.269 0.731 27 H 0.132 0.868 28 H 0.110 0.890 29 H 0.399 0.601 30 H 0.405 0.595 31 H 0.142 0.858 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.982 -20.426 -0.485 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.094 3.906 11 C -0.240 4.240 12 C -0.109 4.109 13 C -0.045 4.045 14 N -0.315 5.315 15 C 0.399 3.601 16 O -0.433 6.433 17 N -0.337 5.337 18 C 0.072 3.928 19 C -0.139 4.139 20 C -0.121 4.121 21 C -0.160 4.160 22 C -0.123 4.123 23 C -0.171 4.171 24 C -0.085 4.085 25 C -0.198 4.198 26 H 0.079 0.921 27 H 0.149 0.851 28 H 0.128 0.872 29 H 0.233 0.767 30 H 0.240 0.760 31 H 0.160 0.840 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.561 -20.158 0.011 22.757 hybrid contribution 1.459 0.861 -0.475 1.760 sum 12.019 -19.297 -0.464 22.739 Atomic orbital electron populations 1.70059 1.05947 1.27559 1.46083 1.25296 0.95851 0.98850 0.96614 0.85643 0.79083 0.80407 0.78244 1.19131 1.20163 1.20162 1.21361 0.91795 0.80854 1.52739 0.89016 1.83991 1.34264 1.11398 1.78330 1.19427 0.90232 0.88137 0.92832 1.20957 0.93674 0.98394 1.10973 1.20447 0.98407 0.91039 1.01025 1.17014 0.90441 0.83709 1.13328 1.42261 1.25692 1.07446 1.56138 1.15937 0.84233 0.80146 0.79751 1.90939 1.20600 1.83039 1.48729 1.42611 1.18214 1.07448 1.65473 1.17521 0.97813 0.84107 0.93318 1.21418 0.98210 0.99558 0.94698 1.21101 0.99169 0.91965 0.99821 1.21125 0.99586 0.98121 0.97129 1.20891 0.97566 0.97223 0.96594 1.20875 1.04097 0.91516 1.00643 1.20764 0.91826 0.97958 0.97979 1.20157 0.99769 0.89791 1.10104 0.92059 0.85069 0.87185 0.76669 0.75978 0.84022 0.85775 0.86170 0.85890 0.85920 0.85221 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.39 -10.86 9.48 30.88 0.29 -10.57 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 9 O -0.18 -5.05 9.75 0.03 0.00 -5.05 16 10 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 11 C -0.22 -4.68 9.16 -39.42 -0.36 -5.04 16 12 C -0.09 -1.57 9.96 -39.42 -0.39 -1.96 16 13 C 0.05 0.84 6.29 -83.62 -0.53 0.31 16 14 N -0.67 -8.94 5.34 -14.18 -0.08 -9.01 16 15 C 0.70 10.01 8.24 -86.92 -0.72 9.29 16 16 O -0.56 -10.18 11.30 5.29 0.06 -10.12 16 17 N -0.69 -7.25 5.34 -14.23 -0.08 -7.33 16 18 C 0.17 1.91 6.28 -83.69 -0.53 1.38 16 19 C -0.12 -1.50 8.69 -39.39 -0.34 -1.84 16 20 C -0.10 -1.07 10.04 -39.61 -0.40 -1.47 16 21 C -0.14 -1.26 10.04 -39.55 -0.40 -1.65 16 22 C -0.10 -0.88 10.04 -39.61 -0.40 -1.28 16 23 C -0.15 -1.37 9.97 -39.39 -0.39 -1.77 16 24 C -0.07 -1.29 8.68 -39.41 -0.34 -1.63 16 25 C -0.18 -3.94 9.99 -39.42 -0.39 -4.33 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.13 2.76 5.63 -52.49 -0.30 2.46 16 28 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.40 3.72 8.85 -40.82 -0.36 3.36 16 30 H 0.41 2.71 8.85 -40.82 -0.36 2.35 16 31 H 0.14 2.09 6.28 -52.49 -0.33 1.76 16 32 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.13 2.55 6.27 -52.49 -0.33 2.22 16 37 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -33.59 323.03 -8.36 -41.95 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.62 Total: 10.15 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -5.25 Total: -16.28 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.61 Total: -40.88 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.06 Total: -15.17 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.59 -8.36 -41.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024689552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.286 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds