Wall clock time and date at job start Tue Mar 31 2020 03:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48500 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47143 * 300.00017 * 3 2 1 6 6 H 1.48495 * 109.47582 * 60.00012 * 3 2 1 7 7 C 1.38630 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 180.02562 * 7 2 1 9 9 O 1.34808 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.35778 * 117.00311 * 174.89882 * 9 7 2 11 11 C 1.38906 * 119.99885 * 5.56206 * 10 9 7 12 12 C 1.38001 * 120.00455 * 180.02562 * 11 10 9 13 13 C 1.38916 * 120.00202 * 359.97438 * 12 11 10 14 14 N 1.40011 * 120.00743 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00050 * 144.65443 * 14 13 12 16 16 O 1.21589 * 120.00460 * 4.32407 * 15 14 13 17 17 N 1.34779 * 120.00018 * 184.32337 * 15 14 13 18 18 C 1.39931 * 120.00212 * 184.54619 * 17 15 14 19 19 C 1.38869 * 120.07024 * 324.12915 * 18 17 15 20 20 C 1.38117 * 119.92697 * 179.81272 * 19 18 17 21 21 C 1.38277 * 120.07235 * 0.43625 * 20 19 18 22 22 C 1.38285 * 120.14082 * 359.79049 * 21 20 19 23 23 C 1.38115 * 120.06916 * 0.02562 * 22 21 20 24 24 C 1.38914 * 119.99198 * 0.25336 * 13 12 11 25 25 C 1.38009 * 120.00285 * 359.51522 * 24 13 12 26 26 H 0.97002 * 120.00039 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99385 * 0.02562 * 11 10 9 28 28 H 1.08005 * 120.00418 * 179.97438 * 12 11 10 29 29 H 0.96999 * 119.99640 * 324.38791 * 14 13 12 30 30 H 0.97004 * 119.99982 * 4.54687 * 17 15 14 31 31 H 1.08002 * 120.03638 * 0.02562 * 19 18 17 32 32 H 1.08003 * 119.96395 * 180.23010 * 20 19 18 33 33 H 1.07998 * 119.93341 * 179.77245 * 21 20 19 34 34 H 1.07995 * 119.96505 * 179.97438 * 22 21 20 35 35 H 1.08004 * 120.03668 * 179.97438 * 23 22 21 36 36 H 1.08002 * 119.99893 * 179.72975 * 24 13 12 37 37 H 1.07999 * 120.00735 * 180.20828 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8911 2.3965 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0701 -3.5044 -0.1086 11 6 3.4575 -3.4377 -0.0964 12 6 4.2049 -4.5925 -0.2068 13 6 3.5698 -5.8219 -0.3296 14 7 4.3280 -6.9935 -0.4422 15 6 3.8904 -8.1363 0.1226 16 8 2.8011 -8.1697 0.6618 17 7 4.6601 -9.2422 0.0896 18 6 4.1679 -10.4524 0.5908 19 6 3.3394 -10.4585 1.7052 20 6 2.8522 -11.6544 2.1951 21 6 3.1958 -12.8455 1.5826 22 6 4.0245 -12.8433 0.4755 23 6 4.5119 -11.6504 -0.0216 24 6 2.1824 -5.8881 -0.3467 25 6 1.4349 -4.7336 -0.2315 26 1 -0.4850 0.8401 0.0004 27 1 3.9513 -2.4820 -0.0004 28 1 5.2837 -4.5406 -0.1977 29 1 5.1664 -6.9837 -0.9300 30 1 5.5553 -9.1992 -0.2816 31 1 3.0736 -9.5288 2.1863 32 1 2.2048 -11.6595 3.0596 33 1 2.8166 -13.7797 1.9698 34 1 4.2914 -13.7752 -0.0004 35 1 5.1594 -11.6493 -0.8860 36 1 1.6885 -6.8434 -0.4466 37 1 0.3562 -4.7854 -0.2413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024689552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:18 Heat of formation + Delta-G solvation = -11.057068 kcal Electronic energy + Delta-G solvation = -22121.373350 eV Core-core repulsion = 18636.020303 eV Total energy + Delta-G solvation = -3485.353047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.00864 -40.73073 -39.72195 -38.21722 -35.83795 -35.44083 -34.14257 -31.88863 -31.77003 -30.73825 -29.06639 -27.29800 -24.40782 -23.92058 -23.53318 -22.65044 -21.79559 -20.08914 -19.40073 -19.14570 -18.70474 -17.63744 -17.00557 -16.62428 -16.35779 -16.18710 -15.78889 -15.54467 -15.34606 -15.10844 -14.83815 -14.57183 -14.26114 -14.22648 -13.75560 -13.58834 -13.26253 -13.20404 -12.74742 -12.61458 -12.42863 -12.14727 -12.07119 -11.49156 -11.33200 -11.20233 -10.90840 -10.57641 -9.85493 -9.81077 -9.14029 -8.59753 -8.44782 -6.12345 0.35887 0.51150 0.52911 0.57144 1.37510 1.44316 1.49926 1.56261 1.98116 2.19530 2.82912 2.94243 3.09771 3.17214 3.52143 4.02325 4.06727 4.12633 4.13752 4.35109 4.49483 4.53763 4.57473 4.63078 4.66343 4.76810 5.05046 5.15031 5.19561 5.28729 5.33309 5.43062 5.48303 5.54621 5.61713 5.66846 5.70382 5.96243 6.03995 6.14214 6.17456 6.91443 6.99424 7.40448 7.80468 8.78733 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.045013 B = 0.002511 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.896795 B =11148.332662 C =11519.989824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.027 4.027 3 Si 1.021 2.979 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.108 0.892 9 O -0.232 6.232 10 C 0.109 3.891 11 C -0.220 4.220 12 C -0.076 4.076 13 C 0.078 3.922 14 N -0.655 5.655 15 C 0.696 3.304 16 O -0.600 6.600 17 N -0.667 5.667 18 C 0.144 3.856 19 C -0.148 4.148 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.102 4.102 23 C -0.143 4.143 24 C -0.071 4.071 25 C -0.190 4.190 26 H 0.272 0.728 27 H 0.134 0.866 28 H 0.161 0.839 29 H 0.425 0.575 30 H 0.426 0.574 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.944 -22.899 -1.416 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.224 4.224 3 Si 0.841 3.159 4 H -0.170 1.170 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.125 0.875 9 O -0.139 6.139 10 C 0.058 3.942 11 C -0.239 4.239 12 C -0.096 4.096 13 C -0.016 4.016 14 N -0.304 5.304 15 C 0.397 3.603 16 O -0.478 6.478 17 N -0.317 5.317 18 C 0.050 3.950 19 C -0.168 4.168 20 C -0.134 4.134 21 C -0.158 4.158 22 C -0.121 4.121 23 C -0.164 4.164 24 C -0.092 4.092 25 C -0.210 4.210 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.178 0.822 29 H 0.264 0.736 30 H 0.265 0.735 31 H 0.128 0.872 32 H 0.148 0.852 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.148 0.852 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.626 -22.730 -0.944 27.045 hybrid contribution 0.339 1.145 -0.178 1.207 sum 14.964 -21.585 -1.122 26.288 Atomic orbital electron populations 1.70218 1.08171 1.28704 1.49071 1.26651 0.96857 1.02922 0.95955 0.84488 0.78436 0.74648 0.78363 1.16954 1.19512 1.19650 1.21923 0.92721 0.81249 1.52812 0.87491 1.83960 1.36012 1.12580 1.81312 1.19869 0.91837 0.87631 0.94868 1.21120 0.92500 0.99973 1.10355 1.20809 1.00631 0.89361 0.98796 1.17088 0.89893 0.85404 1.09238 1.42011 1.26159 1.05884 1.56369 1.16097 0.83947 0.80901 0.79333 1.90939 1.22766 1.83789 1.50338 1.42299 1.18648 1.06147 1.64600 1.17727 0.98654 0.84988 0.93638 1.21331 1.00197 0.99118 0.96189 1.21277 0.99549 0.92132 1.00469 1.21478 0.99011 0.98308 0.96980 1.21354 0.96369 0.98339 0.95996 1.21204 1.03657 0.90568 1.00948 1.20840 0.93179 0.96941 0.98200 1.20251 0.99761 0.90274 1.10745 0.91920 0.84880 0.82164 0.73647 0.73479 0.87237 0.85164 0.83648 0.82610 0.82983 0.85160 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.26 13.67 21.61 0.30 -56.96 16 2 C -0.03 -1.52 5.49 84.82 0.47 -1.06 16 3 Si 1.02 42.54 29.55 68.60 2.03 44.57 16 4 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.41 -23.76 9.48 67.91 0.64 -23.12 16 8 H 0.11 5.54 5.20 -2.91 -0.02 5.53 16 9 O -0.23 -14.13 9.75 -22.82 -0.22 -14.35 16 10 C 0.11 5.51 6.65 22.59 0.15 5.66 16 11 C -0.22 -9.24 9.16 22.37 0.20 -9.04 16 12 C -0.08 -2.45 9.96 22.38 0.22 -2.23 16 13 C 0.08 2.57 6.29 38.16 0.24 2.81 16 14 N -0.65 -15.39 5.34 -317.05 -1.69 -17.08 16 15 C 0.70 18.66 8.24 179.05 1.48 20.13 16 16 O -0.60 -21.91 11.30 -4.00 -0.05 -21.96 16 17 N -0.67 -12.29 5.34 -317.18 -1.69 -13.99 16 18 C 0.14 3.01 6.28 38.15 0.24 3.25 16 19 C -0.15 -3.75 8.69 22.39 0.19 -3.55 16 20 C -0.12 -2.35 10.04 22.25 0.22 -2.13 16 21 C -0.14 -2.11 10.04 22.29 0.22 -1.88 16 22 C -0.10 -1.32 10.04 22.25 0.22 -1.10 16 23 C -0.14 -2.09 9.97 22.39 0.22 -1.87 16 24 C -0.07 -2.84 8.68 22.38 0.19 -2.65 16 25 C -0.19 -8.84 9.99 22.38 0.22 -8.61 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.13 5.50 5.63 -2.91 -0.02 5.49 16 28 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.42 5.88 8.85 -92.71 -0.82 5.06 16 30 H 0.43 4.03 8.85 -92.71 -0.82 3.21 16 31 H 0.11 3.44 6.28 -2.91 -0.02 3.42 16 32 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.13 5.20 6.27 -2.91 -0.02 5.19 16 37 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -80.17 323.03 3.32 -76.86 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -0.50 Total: 28.29 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 5.15 Total: -25.37 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -3.09 Total: -88.04 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.27 Total: -36.31 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -80.17 3.32 -76.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024689552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.800 kcal (2) G-P(sol) polarization free energy of solvation -80.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds