Wall clock time and date at job start Tue Mar 31 2020 03:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00131 * 2 1 4 4 C 1.50702 * 109.47005 * 274.99816 * 3 2 1 5 5 H 1.07997 * 120.00292 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00051 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99861 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00203 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46975 * 90.00103 * 8 6 4 10 10 H 1.48499 * 109.47445 * 210.00432 * 8 6 4 11 11 H 1.48503 * 109.47156 * 330.00481 * 8 6 4 12 12 S 1.65596 * 119.99713 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40345 * 156.45957 * 12 2 1 14 14 O 1.42094 * 106.40745 * 23.53789 * 12 2 1 15 15 N 1.65606 * 107.21969 * 269.99848 * 12 2 1 16 16 C 1.46499 * 120.00003 * 89.99706 * 15 12 2 17 17 C 1.46502 * 119.99935 * 270.00204 * 15 12 2 18 18 C 1.50695 * 109.47115 * 264.99495 * 17 15 12 19 19 C 1.38228 * 120.00366 * 269.72497 * 18 17 15 20 20 C 1.38233 * 120.00340 * 179.76770 * 19 18 17 21 21 C 1.38240 * 119.99931 * 0.50783 * 20 19 18 22 22 C 1.38238 * 119.99544 * 359.74581 * 21 20 19 23 23 C 1.38236 * 120.00142 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47106 * 270.00358 * 1 2 3 25 25 H 1.09002 * 109.46786 * 30.00065 * 1 2 3 26 26 H 1.09002 * 109.47162 * 150.00178 * 1 2 3 27 27 H 1.09002 * 109.47643 * 34.99776 * 3 2 1 28 28 H 1.09003 * 109.47123 * 155.00522 * 3 2 1 29 29 H 0.97001 * 120.00082 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47391 * 270.00374 * 16 15 12 31 31 H 1.09001 * 109.46813 * 150.00430 * 16 15 12 32 32 H 1.09004 * 109.47041 * 30.00557 * 16 15 12 33 33 H 1.08999 * 109.47026 * 24.99991 * 17 15 12 34 34 H 1.09005 * 109.46953 * 144.99617 * 17 15 12 35 35 H 1.08000 * 119.99848 * 0.02562 * 19 18 17 36 36 H 1.07998 * 120.00417 * 180.23439 * 20 19 18 37 37 H 1.07996 * 120.00282 * 179.73033 * 21 20 19 38 38 H 1.07999 * 119.99725 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99548 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9290 1.1934 -2.2332 6 6 2.9998 2.9508 -1.6664 7 7 3.5026 3.6474 -0.6706 8 14 3.1789 3.5664 -3.4209 9 1 2.0181 4.4264 -3.7647 10 1 4.4319 4.3538 -3.5438 11 1 3.2290 2.4083 -4.3492 12 16 2.2929 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5381 -1.8594 1.5810 16 6 1.5477 -2.6818 2.2803 17 6 3.7453 -1.4132 2.2808 18 6 4.7973 -2.4893 2.2038 19 6 4.8702 -3.4566 3.1886 20 6 5.8322 -4.4465 3.1154 21 6 6.7281 -4.4631 2.0628 22 6 6.6586 -3.4928 1.0807 23 6 5.6936 -2.5056 1.1515 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6502 2.0043 0.5894 28 1 3.1858 1.1176 0.4342 29 1 3.9661 4.4810 -0.8472 30 1 0.8113 -2.0357 2.7584 31 1 2.0470 -3.2861 3.0377 32 1 1.0480 -3.3353 1.5653 33 1 4.1211 -0.5033 1.8129 34 1 3.5065 -1.2126 3.3253 35 1 4.1728 -3.4413 4.0131 36 1 5.8867 -5.2044 3.8828 37 1 7.4825 -5.2340 2.0078 38 1 7.3589 -3.5055 0.2585 39 1 5.6396 -1.7472 0.3843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028082789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:40 Heat of formation + Delta-G solvation = -44.364676 kcal Electronic energy + Delta-G solvation = -22864.672722 eV Core-core repulsion = 19513.319300 eV Total energy + Delta-G solvation = -3351.353422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.22555 -36.65838 -35.98171 -35.47553 -35.12075 -32.43612 -31.40333 -30.77032 -27.79518 -27.22748 -25.10406 -24.44662 -22.43611 -22.23778 -21.20766 -18.41971 -17.37898 -16.91930 -16.53528 -16.26674 -15.89047 -15.16864 -14.96062 -14.73686 -14.22388 -13.96417 -13.45919 -13.31238 -13.24962 -12.78267 -12.54761 -12.51235 -12.26721 -12.17061 -11.98260 -11.60113 -11.34938 -11.22149 -11.12716 -11.07782 -11.02765 -10.75692 -10.67439 -10.50897 -10.02811 -9.76411 -8.93884 -8.80479 -8.68373 -8.44849 -8.04525 -6.07368 -4.11223 1.10542 1.49400 1.52950 3.31109 3.37595 3.43309 3.48363 3.91007 4.14325 4.44338 4.86300 4.87349 4.94089 5.08315 5.11660 5.22701 5.27721 5.45891 5.55871 5.61459 5.65634 5.75262 5.84070 5.85164 5.98357 6.08208 6.09318 6.25198 6.32476 6.51873 6.52532 6.66049 6.72603 6.82600 7.13467 7.21117 7.39825 7.60149 7.90367 8.19574 8.91243 9.54119 11.01135 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.005207 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.258307 B = 5376.571392 C = 6206.808207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.997 5.997 3 C 0.258 3.742 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.780 3.220 13 O -0.958 6.958 14 O -0.997 6.997 15 N -1.010 6.010 16 C 0.088 3.912 17 C 0.164 3.836 18 C -0.107 4.107 19 C -0.107 4.107 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.097 4.097 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.264 0.736 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -12.729 9.951 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.840 5.840 3 C 0.136 3.864 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.788 3.212 13 O -0.941 6.941 14 O -0.981 6.981 15 N -0.848 5.848 16 C -0.058 4.058 17 C 0.039 3.961 18 C -0.109 4.109 19 C -0.126 4.126 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.116 4.116 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.638 -13.031 9.250 15.993 hybrid contribution 0.030 0.629 -0.524 0.819 sum 0.668 -12.403 8.726 15.180 Atomic orbital electron populations 1.21337 0.80228 1.03385 1.00156 1.57688 1.14321 1.23373 1.88571 1.19049 0.90866 0.78847 0.97678 1.21486 1.36087 1.06270 0.92906 0.92220 1.24919 0.95090 0.96478 0.97444 1.69914 1.37360 1.15297 1.30925 0.86524 0.77533 0.78847 0.84728 1.20622 1.21046 1.19702 1.02076 0.73524 0.72762 0.72818 1.93587 1.40210 1.84856 1.75490 1.93499 1.67524 1.60460 1.76617 1.58196 1.28121 1.65379 1.33054 1.21473 0.91275 0.94831 0.98224 1.20155 0.82257 0.94956 0.98776 1.20342 0.97222 0.97773 0.95529 1.21018 0.98363 0.94643 0.98552 1.21062 0.96284 0.98926 0.98679 1.21151 0.99147 0.98802 0.94909 1.21224 0.98964 0.95150 0.98916 1.21613 0.93536 0.98766 0.97653 0.94349 0.90413 0.91691 0.94811 0.94557 0.92689 0.93035 0.91351 0.90412 0.88541 0.89861 0.86357 0.86431 0.86460 0.86045 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 10.68 59.85 0.64 2.30 16 2 N -1.00 -20.72 3.23 -123.05 -0.40 -21.12 16 3 C 0.26 6.36 5.08 -5.20 -0.03 6.33 16 4 C -0.53 -14.70 9.38 -34.44 -0.32 -15.03 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 S 2.78 55.67 6.02 -107.50 -0.65 55.02 16 13 O -0.96 -22.01 14.21 -57.18 -0.81 -22.82 16 14 O -1.00 -21.12 15.34 -57.18 -0.88 -22.00 16 15 N -1.01 -15.69 3.23 -123.05 -0.40 -16.09 16 16 C 0.09 1.07 10.68 59.85 0.64 1.71 16 17 C 0.16 2.37 5.45 -5.19 -0.03 2.34 16 18 C -0.11 -1.54 5.46 -104.63 -0.57 -2.11 16 19 C -0.11 -1.29 9.42 -39.59 -0.37 -1.66 16 20 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 21 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 22 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 23 C -0.10 -1.53 9.28 -39.58 -0.37 -1.90 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 26 H 0.06 1.07 7.02 -51.93 -0.36 0.71 16 27 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 28 H 0.04 0.93 7.32 -51.93 -0.38 0.55 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.68 7.59 -51.93 -0.39 0.28 16 32 H 0.08 1.00 7.02 -51.93 -0.36 0.63 16 33 H 0.10 1.56 7.27 -51.93 -0.38 1.18 16 34 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.12 1.14 7.86 -52.49 -0.41 0.73 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.14 2.57 6.60 -52.48 -0.35 2.22 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -32.82 338.69 -9.57 -42.39 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.56 Total: 0.00 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.70 Total: -12.13 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.06 Total: -62.26 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.69 Total: -44.82 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.65 Total: 55.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.82 -9.57 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028082789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.977 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds