Wall clock time and date at job start Tue Mar 31 2020 03:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 N 1.46499 * 109.47329 * 89.99403 * 6 5 4 8 8 S 1.65597 * 120.00171 * 165.00148 * 7 6 5 9 9 O 1.42105 * 106.40486 * 178.54434 * 8 7 6 10 10 O 1.42105 * 106.40293 * 311.46163 * 8 7 6 11 11 N 1.65598 * 107.21903 * 65.00033 * 8 7 6 12 12 C 1.46498 * 119.99872 * 269.99812 * 11 8 7 13 13 C 1.46500 * 120.00028 * 90.00076 * 11 8 7 14 14 C 1.50704 * 109.47080 * 95.00065 * 13 11 8 15 15 H 1.08004 * 119.99748 * 359.97438 * 14 13 11 16 16 C 1.37880 * 119.99937 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99774 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99697 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47458 * 60.00482 * 18 16 14 20 20 H 1.48503 * 109.46752 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47335 * 299.99760 * 18 16 14 22 22 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 5 4 24 24 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 25 25 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 26 26 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 27 27 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 30 30 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 31 31 H 0.97002 * 119.99894 * 345.00114 * 7 6 5 32 32 H 1.09000 * 109.46983 * 90.00161 * 12 11 8 33 33 H 1.09003 * 109.47496 * 209.99691 * 12 11 8 34 34 H 1.08994 * 109.47290 * 330.00494 * 12 11 8 35 35 H 1.08994 * 109.47144 * 215.00228 * 13 11 8 36 36 H 1.08997 * 109.46962 * 335.00135 * 13 11 8 37 37 H 0.97005 * 119.99887 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.99934 * 180.25938 * 22 5 4 39 39 H 1.08001 * 120.00294 * 179.76453 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 7 6.2723 -0.0026 1.3692 8 16 7.8555 -0.3744 1.6814 9 8 8.0256 -0.2571 3.0873 10 8 8.1373 -1.5666 0.9612 11 7 8.7824 0.8152 0.9974 12 6 9.2492 0.6767 -0.3843 13 6 9.1358 2.0061 1.7740 14 6 10.4909 1.8113 2.4039 15 1 11.0344 0.8921 2.2422 16 6 11.0369 2.8065 3.1865 17 7 10.3748 3.9256 3.3837 18 14 12.7163 2.5646 3.9678 19 1 13.7302 2.3475 2.9048 20 1 13.0745 3.7719 4.7549 21 1 12.6791 1.3822 4.8654 22 6 3.5805 -1.1972 0.0010 23 6 2.1982 -1.1972 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 0.0001 29 1 6.1400 -0.8891 -0.5270 30 1 6.1401 0.8909 -0.5236 31 1 5.6717 0.2135 2.0996 32 1 8.5146 1.1127 -1.0614 33 1 10.2017 1.1940 -0.4998 34 1 9.3785 -0.3796 -0.6200 35 1 9.1625 2.8744 1.1157 36 1 8.3917 2.1648 2.5546 37 1 10.7588 4.6256 3.9347 38 1 4.1205 -2.1325 0.0013 39 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028083113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:18 Heat of formation + Delta-G solvation = -59.037337 kcal Electronic energy + Delta-G solvation = -21889.005981 eV Core-core repulsion = 18537.016304 eV Total energy + Delta-G solvation = -3351.989676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.63193 -36.61580 -35.58714 -35.41182 -35.14255 -32.44031 -32.36991 -31.07124 -28.03985 -27.75840 -25.05859 -24.36603 -22.86179 -22.27704 -20.95975 -18.93783 -17.38639 -16.89539 -16.56162 -16.08425 -15.73612 -15.54298 -15.15666 -14.77664 -14.24410 -13.95680 -13.65756 -13.51832 -13.28550 -13.24742 -12.89739 -12.40170 -12.28474 -12.16890 -12.13498 -11.68004 -11.57529 -11.42052 -11.15775 -11.12633 -11.04879 -10.99048 -10.70386 -10.48560 -10.02747 -9.77539 -9.32534 -9.05929 -8.74265 -8.43236 -8.05706 -6.05487 -4.09457 0.98932 1.26777 1.38380 3.34629 3.38087 3.42140 3.44762 3.74200 4.17649 4.45778 4.54125 4.64159 4.74976 4.88290 4.99516 5.08166 5.29673 5.30959 5.33635 5.37661 5.42076 5.57953 5.59395 5.66874 5.90949 5.93959 5.96373 6.03511 6.26063 6.31186 6.42328 6.49450 6.57144 6.85356 7.11785 7.27441 7.43275 7.62511 7.92006 8.21492 8.92664 9.55650 11.03122 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.003505 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.575819 B = 7986.521670 C = 8398.544371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.098 4.098 5 C -0.100 4.100 6 C 0.162 3.838 7 N -1.130 6.130 8 S 2.782 3.218 9 O -0.963 6.963 10 O -0.999 6.999 11 N -0.996 5.996 12 C 0.094 3.906 13 C 0.258 3.742 14 C -0.530 4.530 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.098 4.098 23 C -0.124 4.124 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.413 0.587 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.125 0.875 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.493 -5.908 -9.904 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.117 4.117 5 C -0.101 4.101 6 C 0.036 3.964 7 N -0.889 5.889 8 S 2.789 3.211 9 O -0.947 6.947 10 O -0.982 6.982 11 N -0.839 5.839 12 C -0.053 4.053 13 C 0.136 3.864 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.117 4.117 23 C -0.142 4.142 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.246 0.754 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.010 -6.527 -9.494 20.545 hybrid contribution 0.542 0.498 0.587 0.941 sum -16.468 -6.029 -8.907 19.670 Atomic orbital electron populations 1.20797 0.91303 1.02774 1.02246 1.19967 0.96050 0.93311 0.99327 1.21036 0.94138 0.97553 1.01404 1.21153 0.94166 0.97851 0.98483 1.19882 0.95026 0.93487 1.01704 1.20089 0.90469 1.02583 0.83299 1.56322 1.30630 1.88700 1.13247 1.01936 0.72433 0.73377 0.73327 1.93647 1.84584 1.86615 1.29832 1.93517 1.84227 1.45368 1.75093 1.57595 1.65141 1.38716 1.22431 1.21376 1.00575 1.01643 0.81705 1.19041 0.96257 0.81135 0.89982 1.21468 1.02873 1.02219 1.30362 0.92218 1.24932 0.98038 0.95003 0.96052 1.69910 1.38255 1.06219 1.39164 0.86568 0.83809 0.77663 0.79484 1.20174 1.21176 1.19986 1.21138 0.94137 0.97850 0.98571 1.21025 0.94103 0.97536 1.01577 0.91219 0.91589 0.91539 0.85998 0.85507 0.89882 0.91026 0.75389 0.94347 0.90363 0.91547 0.94722 0.94443 0.92642 0.85666 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.80 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.10 -1.05 9.70 -39.58 -0.38 -1.43 16 5 C -0.10 -1.14 5.28 -104.63 -0.55 -1.69 16 6 C 0.16 2.02 6.37 -5.20 -0.03 1.99 16 7 N -1.13 -16.99 6.05 -11.66 -0.07 -17.06 16 8 S 2.78 55.02 6.10 -107.50 -0.66 54.36 16 9 O -0.96 -23.21 17.11 -57.17 -0.98 -24.19 16 10 O -1.00 -20.61 16.21 -57.17 -0.93 -21.54 16 11 N -1.00 -20.50 3.23 -123.06 -0.40 -20.90 16 12 C 0.09 1.58 10.68 59.85 0.64 2.22 16 13 C 0.26 6.45 5.08 -5.19 -0.03 6.43 16 14 C -0.53 -14.96 9.38 -34.44 -0.32 -15.29 16 15 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 18 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 23 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 30 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.41 5.76 8.64 -34.47 -0.30 5.46 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.94 16 34 H 0.07 1.06 7.02 -51.93 -0.36 0.70 16 35 H 0.03 0.88 8.11 -51.93 -0.42 0.45 16 36 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -34.12 345.83 -9.92 -44.05 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.64 Total: 1.16 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -2.18 Total: -12.53 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.27 Total: -63.47 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.91 Total: -45.72 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 55.02 SS G_CDS: -0.66 Total: 54.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.12 -9.92 -44.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028083113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.990 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds