Wall clock time and date at job start Tue Mar 31 2020 04:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46759 * 124.34915 * 269.72997 * 3 2 1 5 5 C 1.54663 * 105.38247 * 162.85207 * 4 3 2 6 6 H 1.08998 * 111.22247 * 267.57589 * 5 4 3 7 7 C 1.50698 * 110.82472 * 143.77163 * 5 4 3 8 8 O 1.20825 * 119.99890 * 6.35061 * 7 5 4 9 9 O 1.34229 * 120.00318 * 186.34772 * 7 5 4 10 10 C 1.45199 * 116.99932 * 180.02562 * 9 7 5 11 11 C 1.50706 * 109.46904 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99922 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.46490 * 119.99903 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.47262 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00508 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00214 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99614 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47080 * 90.00393 * 19 17 15 21 21 H 1.48500 * 109.46967 * 209.99755 * 19 17 15 22 22 H 1.48501 * 109.47448 * 330.00284 * 19 17 15 23 23 C 1.54629 * 101.68193 * 25.76408 * 5 4 3 24 24 C 1.34423 * 124.34493 * 90.02277 * 3 2 1 25 25 O 1.21276 * 124.94635 * 0.38997 * 24 3 2 26 26 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 31 31 H 1.09005 * 110.24338 * 281.97777 * 4 3 2 32 32 H 1.08993 * 110.24659 * 43.98042 * 4 3 2 33 33 H 1.09001 * 109.47244 * 300.00060 * 10 9 7 34 34 H 1.08997 * 109.46827 * 60.00253 * 10 9 7 35 35 H 0.96998 * 119.99790 * 0.02562 * 13 11 10 36 36 H 1.09001 * 109.47082 * 299.99862 * 14 13 11 37 37 H 1.09001 * 109.47783 * 59.99975 * 14 13 11 38 38 H 0.96998 * 119.99966 * 180.02562 * 18 17 15 39 39 H 1.09005 * 110.48385 * 216.31096 * 23 5 4 40 40 H 1.09002 * 110.48780 * 93.67168 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3527 3.6347 -0.7485 6 1 1.3781 4.1134 -0.8441 7 6 3.4031 4.3989 -1.5123 8 8 3.9833 3.8729 -2.4324 9 8 3.6943 5.6639 -1.1706 10 6 4.7162 6.3388 -1.9506 11 6 4.9056 7.7389 -1.4259 12 8 4.2447 8.1291 -0.4869 13 7 5.8101 8.5569 -1.9997 14 6 5.9946 9.9176 -1.4893 15 6 7.0552 10.6183 -2.2989 16 1 7.5433 10.1014 -3.1120 17 6 7.4024 11.9190 -2.0016 18 7 8.3283 12.5303 -2.7078 19 14 6.5576 12.8131 -0.5958 20 1 7.3149 12.5861 0.6614 21 1 6.5125 14.2679 -0.8905 22 1 5.1742 12.2963 -0.4405 23 6 2.7508 3.4819 0.7379 24 6 2.2716 2.0960 1.1099 25 8 2.1355 1.6893 2.2443 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.2575 1.8612 -1.6381 32 1 1.5020 2.0235 -1.9416 33 1 5.6550 5.7906 -1.8714 34 1 4.4072 6.3813 -2.9950 35 1 6.3389 8.2446 -2.7505 36 1 5.0559 10.4658 -1.5689 37 1 6.3031 9.8752 -0.4448 38 1 8.5728 13.4453 -2.4984 39 1 2.2497 4.2349 1.3463 40 1 3.8323 3.5553 0.8526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046860805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:13 Heat of formation + Delta-G solvation = -153.736919 kcal Electronic energy + Delta-G solvation = -23385.508732 eV Core-core repulsion = 19586.659703 eV Total energy + Delta-G solvation = -3798.849029 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44296 -40.27940 -38.94887 -37.02024 -36.43543 -34.46503 -34.42954 -32.47879 -30.55531 -29.48239 -28.22126 -27.26165 -24.72033 -23.35900 -22.18585 -20.86778 -20.20503 -19.80073 -18.28630 -17.67806 -17.45876 -17.00841 -16.65036 -16.23840 -15.85025 -15.34611 -15.00686 -14.91176 -14.47220 -14.20523 -14.16143 -13.94489 -13.69375 -13.23792 -13.09858 -12.81069 -12.69488 -12.42782 -12.40137 -12.17842 -12.04369 -11.84707 -11.54297 -11.11476 -10.96180 -10.92231 -10.81133 -10.17187 -10.03560 -9.58632 -9.42628 -9.20229 -8.85663 -8.33057 -6.27578 -4.31033 1.78075 2.01303 2.18533 2.57677 2.94829 3.22881 3.29910 3.37275 3.60967 3.73172 3.91817 4.27728 4.30594 4.35114 4.55852 4.66322 4.70438 4.90652 4.96071 4.97800 5.04376 5.08451 5.09250 5.13569 5.24710 5.32179 5.36206 5.43699 5.71079 6.04863 6.08113 6.63053 6.68004 6.96182 7.02560 7.27149 7.35217 7.74460 7.99269 8.36010 8.62138 8.74504 9.31255 10.84102 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.038906 B = 0.002377 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.514724 B =11778.780771 C =12242.166521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.621 5.621 4 C 0.116 3.884 5 C -0.095 4.095 6 H 0.134 0.866 7 C 0.475 3.525 8 O -0.502 6.502 9 O -0.323 6.323 10 C 0.048 3.952 11 C 0.501 3.499 12 O -0.535 6.535 13 N -0.699 5.699 14 C 0.222 3.778 15 C -0.547 4.547 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.890 5.890 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.144 4.144 24 C 0.521 3.479 25 O -0.524 6.524 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.399 0.601 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.696 -23.601 0.873 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.357 5.357 4 C -0.007 4.007 5 C -0.114 4.114 6 H 0.152 0.848 7 C 0.317 3.683 8 O -0.390 6.390 9 O -0.237 6.237 10 C -0.029 4.029 11 C 0.284 3.716 12 O -0.413 6.413 13 N -0.349 5.349 14 C 0.101 3.899 15 C -0.585 4.585 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.185 1.185 23 C -0.184 4.184 24 C 0.309 3.691 25 O -0.400 6.400 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.233 0.767 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.139 0.861 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.958 -23.537 1.852 27.428 hybrid contribution 0.085 0.506 -0.042 0.515 sum -13.873 -23.032 1.810 26.948 Atomic orbital electron populations 1.22172 0.95556 1.02539 1.02621 1.21376 0.94491 0.80645 1.03450 1.48370 1.66130 1.14208 1.06955 1.22047 1.03832 0.87469 0.87333 1.21905 0.98997 0.95198 0.95348 0.84804 1.23072 0.82274 0.80698 0.82302 1.90700 1.50385 1.69117 1.28810 1.86550 1.54201 1.26097 1.56890 1.22893 0.91576 0.92451 0.95961 1.19900 0.81498 0.85928 0.84250 1.90712 1.46471 1.76108 1.27998 1.46070 1.38409 1.15350 1.35080 1.19562 0.97486 0.77587 0.95308 1.21058 1.20866 0.98710 1.17867 0.90120 1.24792 0.94481 0.96976 0.96334 1.69872 1.30112 1.13011 1.39691 0.86815 0.81130 0.79161 0.82576 1.19766 1.20825 1.18466 1.22363 1.04986 0.96704 0.94329 1.20766 0.76448 0.87454 0.84470 1.90748 1.53022 1.75293 1.20955 0.92285 0.92106 0.91253 0.89774 0.90058 0.88888 0.89106 0.88100 0.88072 0.76683 0.95393 0.95833 0.92151 0.86071 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.24 37.16 0.38 -0.54 16 2 C 0.12 0.74 6.65 -4.04 -0.03 0.72 16 3 N -0.62 -4.81 2.93 -172.30 -0.51 -5.31 16 4 C 0.12 0.74 6.65 -3.03 -0.02 0.72 16 5 C -0.09 -0.69 3.67 -90.04 -0.33 -1.02 16 6 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 7 C 0.47 4.92 7.18 36.00 0.26 5.18 16 8 O -0.50 -5.98 15.32 -18.75 -0.29 -6.27 16 9 O -0.32 -4.17 9.74 -45.90 -0.45 -4.62 16 10 C 0.05 0.63 5.94 36.01 0.21 0.84 16 11 C 0.50 8.92 7.91 -10.98 -0.09 8.83 16 12 O -0.54 -11.71 16.50 -14.10 -0.23 -11.94 16 13 N -0.70 -13.18 5.55 -61.47 -0.34 -13.52 16 14 C 0.22 5.22 4.50 -5.20 -0.02 5.20 16 15 C -0.55 -14.50 9.83 -34.44 -0.34 -14.84 16 16 H 0.08 2.22 7.84 -52.48 -0.41 1.80 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 19 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 23 C -0.14 -1.20 6.39 -26.74 -0.17 -1.37 16 24 C 0.52 5.34 8.02 -10.86 -0.09 5.25 16 25 O -0.52 -7.41 17.59 5.56 0.10 -7.31 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.60 7.92 -51.93 -0.41 0.18 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.65 7.07 -51.93 -0.37 0.29 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 34 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 35 H 0.40 6.44 8.32 -40.82 -0.34 6.10 16 36 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 37 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -34.98 347.66 -6.38 -41.36 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.68 Total: 0.21 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -0.33 Total: 11.03 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.07 Total: -43.91 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.87 Total: -30.13 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.98 -6.38 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046860805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.380 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds