Wall clock time and date at job start Tue Mar 31 2020 04:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46759 * 124.34915 * 269.72997 * 3 2 1 5 5 C 1.54663 * 105.38247 * 162.85207 * 4 3 2 6 6 H 1.08998 * 111.22247 * 267.57589 * 5 4 3 7 7 C 1.50698 * 110.82472 * 143.77163 * 5 4 3 8 8 O 1.20825 * 119.99890 * 6.35061 * 7 5 4 9 9 O 1.34229 * 120.00318 * 186.34772 * 7 5 4 10 10 C 1.45199 * 116.99932 * 180.02562 * 9 7 5 11 11 C 1.50706 * 109.46904 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99922 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.46490 * 119.99903 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.47262 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00508 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00214 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99614 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47080 * 90.00393 * 19 17 15 21 21 H 1.48500 * 109.46967 * 209.99755 * 19 17 15 22 22 H 1.48501 * 109.47448 * 330.00284 * 19 17 15 23 23 C 1.54629 * 101.68193 * 25.76408 * 5 4 3 24 24 C 1.34423 * 124.34493 * 90.02277 * 3 2 1 25 25 O 1.21276 * 124.94635 * 0.38997 * 24 3 2 26 26 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 31 31 H 1.09005 * 110.24338 * 281.97777 * 4 3 2 32 32 H 1.08993 * 110.24659 * 43.98042 * 4 3 2 33 33 H 1.09001 * 109.47244 * 300.00060 * 10 9 7 34 34 H 1.08997 * 109.46827 * 60.00253 * 10 9 7 35 35 H 0.96998 * 119.99790 * 0.02562 * 13 11 10 36 36 H 1.09001 * 109.47082 * 299.99862 * 14 13 11 37 37 H 1.09001 * 109.47783 * 59.99975 * 14 13 11 38 38 H 0.96998 * 119.99966 * 180.02562 * 18 17 15 39 39 H 1.09005 * 110.48385 * 216.31096 * 23 5 4 40 40 H 1.09002 * 110.48780 * 93.67168 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3527 3.6347 -0.7485 6 1 1.3781 4.1134 -0.8441 7 6 3.4031 4.3989 -1.5123 8 8 3.9833 3.8729 -2.4324 9 8 3.6943 5.6639 -1.1706 10 6 4.7162 6.3388 -1.9506 11 6 4.9056 7.7389 -1.4259 12 8 4.2447 8.1291 -0.4869 13 7 5.8101 8.5569 -1.9997 14 6 5.9946 9.9176 -1.4893 15 6 7.0552 10.6183 -2.2989 16 1 7.5433 10.1014 -3.1120 17 6 7.4024 11.9190 -2.0016 18 7 8.3283 12.5303 -2.7078 19 14 6.5576 12.8131 -0.5958 20 1 7.3149 12.5861 0.6614 21 1 6.5125 14.2679 -0.8905 22 1 5.1742 12.2963 -0.4405 23 6 2.7508 3.4819 0.7379 24 6 2.2716 2.0960 1.1099 25 8 2.1355 1.6893 2.2443 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.2575 1.8612 -1.6381 32 1 1.5020 2.0235 -1.9416 33 1 5.6550 5.7906 -1.8714 34 1 4.4072 6.3813 -2.9950 35 1 6.3389 8.2446 -2.7505 36 1 5.0559 10.4658 -1.5689 37 1 6.3031 9.8752 -0.4448 38 1 8.5728 13.4453 -2.4984 39 1 2.2497 4.2349 1.3463 40 1 3.8323 3.5553 0.8526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046860805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:13 Heat of formation + Delta-G solvation = -178.489950 kcal Electronic energy + Delta-G solvation = -23386.582104 eV Core-core repulsion = 19586.659703 eV Total energy + Delta-G solvation = -3799.922401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.22831 -41.17100 -40.33705 -37.92284 -37.30854 -36.18767 -35.02464 -34.45194 -31.39963 -30.70892 -28.99647 -28.67774 -25.45249 -24.15305 -23.79554 -21.75345 -21.63318 -20.48549 -19.40296 -18.95674 -18.25220 -18.18970 -17.65079 -17.41733 -16.89285 -16.72957 -16.22359 -16.16377 -15.63712 -15.10126 -14.99920 -14.77552 -14.72277 -14.40553 -14.28735 -14.19869 -13.76127 -13.63755 -13.35655 -13.07719 -12.88176 -12.70591 -12.64160 -12.51728 -12.02713 -11.93086 -11.90275 -11.74677 -11.65615 -10.99628 -10.93740 -10.91667 -10.02206 -9.83574 -8.39465 -6.46936 0.97707 1.12598 1.34430 1.37573 1.41375 1.48622 1.54556 1.94079 2.28662 2.45361 2.96092 3.05458 3.23355 3.57383 3.69708 3.72253 3.99287 4.08908 4.10663 4.14046 4.23844 4.47126 4.51455 4.54085 4.72404 4.76464 4.79546 4.85344 4.95631 5.01850 5.20341 5.25751 5.28694 5.41922 5.50721 5.97151 6.06280 6.49253 6.54161 6.73993 7.00887 7.13053 7.29317 8.74966 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.038906 B = 0.002377 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.514724 B =11778.780771 C =12242.166521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.615 5.615 4 C 0.119 3.881 5 C -0.085 4.085 6 H 0.160 0.840 7 C 0.481 3.519 8 O -0.515 6.515 9 O -0.341 6.341 10 C 0.058 3.942 11 C 0.503 3.497 12 O -0.578 6.578 13 N -0.698 5.698 14 C 0.232 3.768 15 C -0.548 4.548 16 H 0.062 0.938 17 C 0.026 3.974 18 N -0.930 5.930 19 Si 0.937 3.063 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.142 4.142 24 C 0.515 3.485 25 O -0.573 6.573 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.413 0.587 36 H 0.018 0.982 37 H 0.015 0.985 38 H 0.272 0.728 39 H 0.124 0.876 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.945 -24.856 0.123 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.348 5.348 4 C -0.003 4.003 5 C -0.104 4.104 6 H 0.177 0.823 7 C 0.324 3.676 8 O -0.403 6.403 9 O -0.256 6.256 10 C -0.019 4.019 11 C 0.289 3.711 12 O -0.458 6.458 13 N -0.349 5.349 14 C 0.109 3.891 15 C -0.585 4.585 16 H 0.080 0.920 17 C -0.175 4.175 18 N -0.569 5.569 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.182 4.182 24 C 0.303 3.697 25 O -0.453 6.453 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.249 0.751 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.206 -24.837 1.040 29.140 hybrid contribution 0.491 0.800 0.116 0.945 sum -14.715 -24.037 1.157 28.207 Atomic orbital electron populations 1.22122 0.94780 1.03394 1.01991 1.21572 0.95117 0.79850 1.04044 1.48504 1.64804 1.14741 1.06781 1.22176 1.04849 0.86353 0.86958 1.21991 0.99026 0.95603 0.93829 0.82286 1.23487 0.82246 0.79730 0.82153 1.90701 1.50949 1.69096 1.29603 1.86547 1.54288 1.27400 1.57354 1.22765 0.93134 0.89316 0.96637 1.20641 0.79862 0.87460 0.83142 1.90691 1.47847 1.77362 1.29891 1.45862 1.39312 1.14055 1.35705 1.19158 0.95769 0.79784 0.94421 1.21285 1.21023 0.98845 1.17396 0.91987 1.25601 0.95127 0.98030 0.98720 1.69977 1.31757 1.13646 1.41535 0.85868 0.80133 0.78229 0.79727 1.19081 1.20019 1.18174 1.22331 1.04836 0.95757 0.95280 1.21062 0.76074 0.88264 0.84298 1.90717 1.55358 1.76353 1.22885 0.91102 0.94404 0.89746 0.91299 0.87363 0.89159 0.86206 0.85747 0.85461 0.75065 0.96456 0.96662 0.91855 0.85803 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.24 71.98 0.74 -0.74 16 2 C 0.11 1.21 6.65 86.38 0.57 1.78 16 3 N -0.61 -8.43 2.93 -817.64 -2.40 -10.83 16 4 C 0.12 1.14 6.65 86.90 0.58 1.72 16 5 C -0.09 -1.01 3.67 -10.42 -0.04 -1.05 16 6 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 7 C 0.48 8.64 7.18 71.24 0.51 9.15 16 8 O -0.52 -10.69 15.32 21.97 0.34 -10.35 16 9 O -0.34 -7.99 9.74 -45.05 -0.44 -8.43 16 10 C 0.06 1.35 5.94 71.24 0.42 1.77 16 11 C 0.50 17.17 7.91 87.66 0.69 17.86 16 12 O -0.58 -24.82 16.50 15.77 0.26 -24.56 16 13 N -0.70 -25.58 5.55 -466.79 -2.59 -28.17 16 14 C 0.23 10.81 4.50 85.64 0.38 11.20 16 15 C -0.55 -29.11 9.83 25.60 0.25 -28.86 16 16 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 17 C 0.03 1.42 5.47 84.65 0.46 1.88 16 18 N -0.93 -54.48 13.96 21.45 0.30 -54.18 16 19 Si 0.94 42.89 27.47 68.60 1.88 44.77 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.26 -11.59 6.54 99.48 0.65 -10.94 16 23 C -0.14 -2.20 6.39 30.59 0.20 -2.00 16 24 C 0.51 10.27 8.02 87.90 0.71 10.98 16 25 O -0.57 -16.63 17.59 -3.02 -0.05 -16.68 16 26 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.07 0.95 7.92 -2.39 -0.02 0.93 16 30 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 1.00 7.07 -2.38 -0.02 0.98 16 32 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.12 2.34 8.13 -2.39 -0.02 2.32 16 34 H 0.13 2.33 8.13 -2.39 -0.02 2.31 16 35 H 0.41 12.78 8.32 -92.71 -0.77 12.00 16 36 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 37 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 38 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.11 1.76 7.89 -2.39 -0.02 1.75 16 Total: -1.00 -76.42 347.66 3.02 -73.40 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.24 Total: 11.34 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 5.48 Total: 23.68 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -4.69 Total: -93.18 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: 0.10 Total: -60.02 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Total: -76.42 3.02 -73.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046860805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.089 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds