Wall clock time and date at job start Tue Mar 31 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31123 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48493 * 109.47429 * 274.91591 * 3 2 1 5 5 H 1.48504 * 109.46992 * 34.91539 * 3 2 1 6 6 H 1.48493 * 109.47128 * 154.91155 * 3 2 1 7 7 C 1.39411 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00023 * 2.49318 * 7 2 1 9 9 N 1.36369 * 120.00114 * 182.48909 * 7 2 1 10 10 C 1.34778 * 119.99980 * 306.30203 * 9 7 2 11 11 O 1.21591 * 119.99950 * 3.23922 * 10 9 7 12 12 C 1.47929 * 119.99903 * 183.23404 * 10 9 7 13 13 C 1.36857 * 120.83992 * 280.04722 * 12 10 9 14 14 C 1.41375 * 120.01179 * 179.97438 * 13 12 10 15 15 O 1.21859 * 119.14476 * 180.02562 * 14 13 12 16 16 N 1.34391 * 121.71045 * 359.97438 * 14 13 12 17 17 H 0.97002 * 119.38289 * 180.02562 * 16 14 13 18 18 C 1.37919 * 121.23572 * 0.02562 * 16 14 13 19 19 C 1.39150 * 120.87767 * 179.97438 * 18 16 14 20 20 C 1.37813 * 119.74894 * 179.97438 * 19 18 16 21 21 C 1.38822 * 120.65993 * 0.02562 * 20 19 18 22 22 C 1.36664 * 120.54703 * 359.97438 * 21 20 19 23 23 C 1.39660 * 119.74750 * 359.72808 * 22 21 20 24 24 C 1.46502 * 119.99845 * 126.29923 * 9 7 2 25 25 C 1.53004 * 117.49902 * 3.39869 * 24 9 7 26 26 C 1.52997 * 117.49872 * 294.73911 * 24 9 7 27 27 H 0.97006 * 120.00204 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.98970 * 359.97438 * 13 12 10 29 29 H 1.07997 * 120.12683 * 359.97438 * 19 18 16 30 30 H 1.08001 * 119.67089 * 180.02562 * 20 19 18 31 31 H 1.08001 * 119.72863 * 179.97438 * 21 20 19 32 32 H 1.08002 * 120.12998 * 180.02562 * 22 21 20 33 33 H 1.08998 * 115.54610 * 149.07257 * 24 9 7 34 34 H 1.08996 * 117.49679 * 359.97438 * 25 24 9 35 35 H 1.08997 * 117.49444 * 145.02266 * 25 24 9 36 36 H 1.09002 * 117.50297 * 214.98220 * 26 24 9 37 37 H 1.09000 * 117.50171 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 14 2.2452 1.6178 0.0000 4 1 2.3888 2.1065 -1.3948 5 1 1.4984 2.6205 0.8014 6 1 3.5907 1.4125 0.5936 7 6 2.0083 -1.2073 -0.0005 8 1 1.4691 -2.1422 -0.0416 9 7 3.3710 -1.2079 0.0507 10 6 4.0795 -0.4965 -0.8484 11 8 3.5038 0.1925 -1.6682 12 6 5.5577 -0.5538 -0.8376 13 6 6.2820 0.1852 0.0581 14 6 7.6940 0.1167 0.0533 15 8 8.3232 0.7810 0.8581 16 7 8.3605 -0.6629 -0.8153 17 1 9.3299 -0.6844 -0.7885 18 6 7.6919 -1.4327 -1.7439 19 6 8.3894 -2.2368 -2.6401 20 6 7.6978 -2.9972 -3.5581 21 6 6.3104 -2.9691 -3.5988 22 6 5.6057 -2.1864 -2.7278 23 6 6.2862 -1.4126 -1.7852 24 6 4.0648 -1.9818 1.0832 25 6 3.2084 -2.8313 2.0245 26 6 3.8715 -1.5510 2.5385 27 1 -0.4851 0.8401 0.0004 28 1 5.7746 0.8207 0.7688 29 1 9.4688 -2.2649 -2.6164 30 1 8.2404 -3.6211 -4.2528 31 1 5.7836 -3.5707 -4.3247 32 1 4.5264 -2.1700 -2.7652 33 1 5.0416 -2.3739 0.7999 34 1 2.1288 -2.8140 1.8757 35 1 3.6220 -3.7820 2.3607 36 1 4.7209 -1.6599 3.2128 37 1 3.2284 -0.6914 2.7278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063448479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:57 Heat of formation + Delta-G solvation = 21.186389 kcal Electronic energy + Delta-G solvation = -24307.119055 eV Core-core repulsion = 20823.164189 eV Total energy + Delta-G solvation = -3483.954866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.30141 -39.32986 -38.60484 -36.58987 -35.42138 -33.94990 -33.11436 -31.58876 -30.32568 -29.50024 -26.25440 -24.04780 -23.34937 -22.86167 -21.94508 -21.47213 -19.69895 -18.65187 -18.26620 -17.65229 -17.07451 -16.49790 -15.64968 -15.32666 -15.04559 -14.90533 -14.57321 -14.23714 -14.07591 -13.57876 -13.49811 -13.28149 -13.13008 -12.90787 -12.64583 -11.72520 -11.55526 -11.36287 -11.20736 -11.04127 -10.86628 -10.41162 -10.36459 -10.32907 -10.14737 -10.00968 -9.64548 -9.07340 -8.64504 -8.57883 -8.07237 -7.63718 -6.34174 -4.29499 0.41986 1.12915 1.70022 2.85387 2.99459 3.10481 3.37429 3.54068 3.68486 3.85060 4.05650 4.35602 4.44662 4.51493 4.62959 4.70408 4.86206 4.98985 5.11355 5.20907 5.24021 5.41214 5.52294 5.60494 5.62719 5.72868 5.83379 5.98567 6.11213 6.16120 6.23648 6.31230 6.48664 6.58997 6.63162 6.69501 6.84943 6.99782 7.62613 7.85256 7.97904 8.50499 8.58254 9.17481 9.50937 10.66661 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.006477 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.286994 B = 4322.181029 C = 4679.042768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.084 3.916 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.316 1.316 6 H -0.287 1.287 7 C -0.345 4.345 8 H 0.102 0.898 9 N -0.415 5.415 10 C 0.494 3.506 11 O -0.530 6.530 12 C 0.007 3.993 13 C -0.202 4.202 14 C 0.544 3.456 15 O -0.543 6.543 16 N -0.631 5.631 17 H 0.413 0.587 18 C 0.183 3.817 19 C -0.169 4.169 20 C -0.067 4.067 21 C -0.151 4.151 22 C -0.040 4.040 23 C -0.105 4.105 24 C 0.056 3.944 25 C -0.165 4.165 26 C -0.193 4.193 27 H 0.276 0.724 28 H 0.157 0.843 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.141 0.859 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.815 -7.914 -3.290 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.127 4.127 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.247 1.247 6 H -0.214 1.214 7 C -0.472 4.472 8 H 0.119 0.881 9 N -0.133 5.133 10 C 0.283 3.717 11 O -0.414 6.414 12 C 0.001 3.999 13 C -0.224 4.224 14 C 0.341 3.659 15 O -0.423 6.423 16 N -0.270 5.270 17 H 0.250 0.750 18 C 0.081 3.919 19 C -0.189 4.189 20 C -0.085 4.085 21 C -0.170 4.170 22 C -0.059 4.059 23 C -0.109 4.109 24 C -0.049 4.049 25 C -0.203 4.203 26 C -0.231 4.231 27 H 0.086 0.914 28 H 0.174 0.826 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.159 0.841 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.467 -7.063 -3.168 16.408 hybrid contribution 0.778 0.831 0.039 1.139 sum 15.245 -6.232 -3.129 16.764 Atomic orbital electron populations 1.69542 1.06828 1.28699 1.44399 1.25630 0.95157 1.00058 0.91811 0.85719 0.77879 0.80932 0.78027 1.19162 1.24679 1.21398 1.18764 0.77615 0.95220 1.55556 0.88083 1.42887 1.06140 1.41677 1.22582 1.18279 0.84905 0.85601 0.82887 1.90516 1.69304 1.41811 1.39784 1.21728 0.95709 0.91303 0.91140 1.22428 0.92042 1.04890 1.02995 1.17004 0.89033 0.79415 0.80485 1.90921 1.69385 1.43554 1.38456 1.43403 1.11126 1.40903 1.31555 0.74951 1.17878 0.90875 0.92555 0.90582 1.20651 0.99793 1.00443 0.98036 1.21094 0.94302 0.96617 0.96529 1.20854 0.94042 1.01291 1.00801 1.21093 1.01168 0.92084 0.91542 1.18410 0.90272 1.02032 1.00144 1.21902 0.96694 1.00467 0.85846 1.23145 1.01377 0.93741 1.02009 1.23267 1.03182 0.99796 0.96900 0.91377 0.82592 0.84986 0.85191 0.85158 0.84097 0.87463 0.86699 0.89387 0.89316 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 13.94 55.52 0.77 -24.23 16 2 C 0.08 2.36 5.33 -17.42 -0.09 2.27 16 3 Si 0.94 24.95 24.22 -169.99 -4.12 20.84 16 4 H -0.26 -7.44 6.68 56.52 0.38 -7.06 16 5 H -0.32 -8.24 7.11 56.52 0.40 -7.83 16 6 H -0.29 -7.36 5.90 56.52 0.33 -7.03 16 7 C -0.35 -9.13 8.24 -15.10 -0.12 -9.26 16 8 H 0.10 2.79 7.60 -52.48 -0.40 2.39 16 9 N -0.41 -9.53 2.46 -108.79 -0.27 -9.79 16 10 C 0.49 11.42 3.79 -12.29 -0.05 11.37 16 11 O -0.53 -14.18 12.40 5.29 0.07 -14.11 16 12 C 0.01 0.14 4.15 -102.80 -0.43 -0.28 16 13 C -0.20 -3.76 9.51 -38.89 -0.37 -4.13 16 14 C 0.54 9.22 7.67 -15.24 -0.12 9.10 16 15 O -0.54 -10.50 17.87 5.05 0.09 -10.41 16 16 N -0.63 -8.27 5.29 -12.57 -0.07 -8.34 16 17 H 0.41 4.11 8.75 -40.82 -0.36 3.75 16 18 C 0.18 2.39 6.65 -83.88 -0.56 1.83 16 19 C -0.17 -1.64 9.91 -39.40 -0.39 -2.03 16 20 C -0.07 -0.61 10.01 -39.52 -0.40 -1.01 16 21 C -0.15 -1.67 9.97 -39.93 -0.40 -2.07 16 22 C -0.04 -0.60 9.46 -39.62 -0.37 -0.97 16 23 C -0.11 -1.67 5.89 -104.83 -0.62 -2.29 16 24 C 0.06 1.05 5.79 -67.93 -0.39 0.65 16 25 C -0.17 -2.79 9.83 -26.69 -0.26 -3.06 16 26 C -0.19 -3.36 10.36 -26.69 -0.28 -3.63 16 27 H 0.28 7.58 8.30 -40.82 -0.34 7.24 16 28 H 0.16 3.08 7.57 -52.49 -0.40 2.68 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.14 2.33 7.28 -52.49 -0.38 1.94 16 33 H 0.11 1.80 7.27 -51.93 -0.38 1.42 16 34 H 0.11 2.21 6.80 -51.93 -0.35 1.86 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -33.09 314.58 -7.65 -40.75 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.03 Total: 4.06 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -4.84 Total: -3.51 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.44 Total: -42.36 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.16 Total: -24.52 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.12 Total: 20.84 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.09 -7.65 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063448479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.932 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds