Wall clock time and date at job start Tue Mar 31 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31123 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48493 * 109.47429 * 274.91591 * 3 2 1 5 5 H 1.48504 * 109.46992 * 34.91539 * 3 2 1 6 6 H 1.48493 * 109.47128 * 154.91155 * 3 2 1 7 7 C 1.39411 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00023 * 2.49318 * 7 2 1 9 9 N 1.36369 * 120.00114 * 182.48909 * 7 2 1 10 10 C 1.34778 * 119.99980 * 306.30203 * 9 7 2 11 11 O 1.21591 * 119.99950 * 3.23922 * 10 9 7 12 12 C 1.47929 * 119.99903 * 183.23404 * 10 9 7 13 13 C 1.36857 * 120.83992 * 280.04722 * 12 10 9 14 14 C 1.41375 * 120.01179 * 179.97438 * 13 12 10 15 15 O 1.21859 * 119.14476 * 180.02562 * 14 13 12 16 16 N 1.34391 * 121.71045 * 359.97438 * 14 13 12 17 17 H 0.97002 * 119.38289 * 180.02562 * 16 14 13 18 18 C 1.37919 * 121.23572 * 0.02562 * 16 14 13 19 19 C 1.39150 * 120.87767 * 179.97438 * 18 16 14 20 20 C 1.37813 * 119.74894 * 179.97438 * 19 18 16 21 21 C 1.38822 * 120.65993 * 0.02562 * 20 19 18 22 22 C 1.36664 * 120.54703 * 359.97438 * 21 20 19 23 23 C 1.39660 * 119.74750 * 359.72808 * 22 21 20 24 24 C 1.46502 * 119.99845 * 126.29923 * 9 7 2 25 25 C 1.53004 * 117.49902 * 3.39869 * 24 9 7 26 26 C 1.52997 * 117.49872 * 294.73911 * 24 9 7 27 27 H 0.97006 * 120.00204 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.98970 * 359.97438 * 13 12 10 29 29 H 1.07997 * 120.12683 * 359.97438 * 19 18 16 30 30 H 1.08001 * 119.67089 * 180.02562 * 20 19 18 31 31 H 1.08001 * 119.72863 * 179.97438 * 21 20 19 32 32 H 1.08002 * 120.12998 * 180.02562 * 22 21 20 33 33 H 1.08998 * 115.54610 * 149.07257 * 24 9 7 34 34 H 1.08996 * 117.49679 * 359.97438 * 25 24 9 35 35 H 1.08997 * 117.49444 * 145.02266 * 25 24 9 36 36 H 1.09002 * 117.50297 * 214.98220 * 26 24 9 37 37 H 1.09000 * 117.50171 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 14 2.2452 1.6178 0.0000 4 1 2.3888 2.1065 -1.3948 5 1 1.4984 2.6205 0.8014 6 1 3.5907 1.4125 0.5936 7 6 2.0083 -1.2073 -0.0005 8 1 1.4691 -2.1422 -0.0416 9 7 3.3710 -1.2079 0.0507 10 6 4.0795 -0.4965 -0.8484 11 8 3.5038 0.1925 -1.6682 12 6 5.5577 -0.5538 -0.8376 13 6 6.2820 0.1852 0.0581 14 6 7.6940 0.1167 0.0533 15 8 8.3232 0.7810 0.8581 16 7 8.3605 -0.6629 -0.8153 17 1 9.3299 -0.6844 -0.7885 18 6 7.6919 -1.4327 -1.7439 19 6 8.3894 -2.2368 -2.6401 20 6 7.6978 -2.9972 -3.5581 21 6 6.3104 -2.9691 -3.5988 22 6 5.6057 -2.1864 -2.7278 23 6 6.2862 -1.4126 -1.7852 24 6 4.0648 -1.9818 1.0832 25 6 3.2084 -2.8313 2.0245 26 6 3.8715 -1.5510 2.5385 27 1 -0.4851 0.8401 0.0004 28 1 5.7746 0.8207 0.7688 29 1 9.4688 -2.2649 -2.6164 30 1 8.2404 -3.6211 -4.2528 31 1 5.7836 -3.5707 -4.3247 32 1 4.5264 -2.1700 -2.7652 33 1 5.0416 -2.3739 0.7999 34 1 2.1288 -2.8140 1.8757 35 1 3.6220 -3.7820 2.3607 36 1 4.7209 -1.6599 3.2128 37 1 3.2284 -0.6914 2.7278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063448479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:56 Heat of formation + Delta-G solvation = -1.814098 kcal Electronic energy + Delta-G solvation = -24308.116431 eV Core-core repulsion = 20823.164189 eV Total energy + Delta-G solvation = -3484.952242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.53921 -41.07250 -39.73961 -38.25717 -36.56964 -35.40410 -34.99128 -33.52252 -31.35922 -30.55970 -28.06778 -25.64980 -24.52471 -23.89800 -23.39941 -22.99778 -21.45195 -19.98925 -19.40092 -19.19266 -18.39476 -18.15092 -17.46483 -16.71952 -16.50863 -16.14826 -15.81179 -15.66118 -15.52579 -15.21119 -15.01330 -14.80933 -14.66090 -14.23489 -14.11146 -13.59388 -13.07115 -12.67087 -12.50767 -12.32878 -12.28240 -12.15054 -12.08813 -11.84927 -11.59410 -11.55482 -11.34660 -11.07625 -10.61859 -9.65790 -9.52722 -9.16174 -8.53216 -6.45713 -0.81788 0.11366 0.60115 1.00408 1.17739 1.35969 1.65794 1.81045 1.91318 2.24408 2.33353 2.78971 2.83167 3.05412 3.29325 3.37609 3.45729 3.86909 3.93499 3.95861 4.08471 4.18697 4.26377 4.33162 4.40519 4.63552 4.71233 4.81676 4.85093 4.95846 5.00114 5.14842 5.38152 5.41347 5.50912 5.54277 5.58535 5.69315 5.79818 5.92488 6.48891 6.63964 6.78139 7.07011 7.55042 8.50834 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.006477 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.286994 B = 4322.181029 C = 4679.042768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.047 3.953 3 Si 0.976 3.024 4 H -0.293 1.293 5 H -0.311 1.311 6 H -0.281 1.281 7 C -0.332 4.332 8 H 0.084 0.916 9 N -0.426 5.426 10 C 0.495 3.505 11 O -0.576 6.576 12 C 0.007 3.993 13 C -0.213 4.213 14 C 0.549 3.451 15 O -0.573 6.573 16 N -0.608 5.608 17 H 0.432 0.568 18 C 0.180 3.820 19 C -0.148 4.148 20 C -0.046 4.046 21 C -0.139 4.139 22 C -0.070 4.070 23 C -0.132 4.132 24 C 0.037 3.963 25 C -0.150 4.150 26 C -0.187 4.187 27 H 0.278 0.722 28 H 0.135 0.865 29 H 0.178 0.822 30 H 0.179 0.821 31 H 0.154 0.846 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.296 -10.550 -4.190 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.159 4.159 3 Si 0.811 3.189 4 H -0.221 1.221 5 H -0.242 1.242 6 H -0.208 1.208 7 C -0.459 4.459 8 H 0.101 0.899 9 N -0.143 5.143 10 C 0.286 3.714 11 O -0.463 6.463 12 C 0.000 4.000 13 C -0.235 4.235 14 C 0.346 3.654 15 O -0.457 6.457 16 N -0.247 5.247 17 H 0.274 0.726 18 C 0.078 3.922 19 C -0.168 4.168 20 C -0.064 4.064 21 C -0.157 4.157 22 C -0.089 4.089 23 C -0.135 4.135 24 C -0.067 4.067 25 C -0.187 4.187 26 C -0.225 4.225 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.196 0.804 30 H 0.197 0.803 31 H 0.171 0.829 32 H 0.124 0.876 33 H 0.150 0.850 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.983 -9.740 -4.053 21.717 hybrid contribution -0.520 1.450 0.132 1.546 sum 18.463 -8.290 -3.920 20.615 Atomic orbital electron populations 1.69581 1.07440 1.29023 1.47276 1.26046 0.95542 1.01620 0.92659 0.85138 0.77717 0.79711 0.76316 1.22140 1.24154 1.20752 1.18619 0.79399 0.94036 1.53895 0.89857 1.43039 1.05214 1.42142 1.23950 1.18849 0.86927 0.83871 0.81747 1.90462 1.70879 1.43617 1.41378 1.21462 0.92961 0.92829 0.92726 1.22282 0.93403 1.04998 1.02829 1.16592 0.88082 0.79818 0.80925 1.90907 1.69559 1.45170 1.40017 1.43102 1.11976 1.39419 1.30239 0.72608 1.18061 0.89653 0.93204 0.91274 1.21199 1.01944 0.97912 0.95770 1.21658 0.93223 0.95502 0.96063 1.21196 0.95413 0.99639 0.99478 1.20942 0.99888 0.94443 0.93583 1.18404 0.91721 1.02865 1.00504 1.22163 0.97853 1.01329 0.85360 1.23184 0.99673 0.95443 1.00409 1.23314 1.03890 0.99068 0.96237 0.91255 0.84737 0.80437 0.80348 0.82880 0.87563 0.84954 0.89576 0.85045 0.85662 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.67 13.94 21.74 0.30 -54.36 16 2 C 0.05 2.81 5.33 85.08 0.45 3.26 16 3 Si 0.98 54.10 24.22 68.60 1.66 55.76 16 4 H -0.29 -17.42 6.68 99.48 0.66 -16.75 16 5 H -0.31 -16.61 7.11 99.48 0.71 -15.90 16 6 H -0.28 -15.01 5.90 99.48 0.59 -14.43 16 7 C -0.33 -18.44 8.24 84.27 0.69 -17.74 16 8 H 0.08 4.87 7.60 -2.91 -0.02 4.84 16 9 N -0.43 -20.27 2.46 -616.36 -1.52 -21.79 16 10 C 0.50 23.88 3.79 86.81 0.33 24.20 16 11 O -0.58 -32.60 12.40 -4.00 -0.05 -32.65 16 12 C 0.01 0.25 4.15 -18.68 -0.08 0.18 16 13 C -0.21 -8.03 9.51 22.72 0.22 -7.81 16 14 C 0.55 17.94 7.67 85.07 0.65 18.59 16 15 O -0.57 -21.66 17.87 -4.86 -0.09 -21.75 16 16 N -0.61 -13.92 5.29 -312.06 -1.65 -15.57 16 17 H 0.43 6.66 8.75 -92.71 -0.81 5.85 16 18 C 0.18 4.01 6.65 38.99 0.26 4.27 16 19 C -0.15 -1.92 9.91 22.39 0.22 -1.70 16 20 C -0.05 -0.54 10.01 22.31 0.22 -0.31 16 21 C -0.14 -2.53 9.97 22.04 0.22 -2.31 16 22 C -0.07 -1.99 9.46 22.24 0.21 -1.78 16 23 C -0.13 -4.03 5.89 -20.00 -0.12 -4.15 16 24 C 0.04 1.36 5.79 44.99 0.26 1.62 16 25 C -0.15 -4.91 9.83 30.62 0.30 -4.61 16 26 C -0.19 -6.35 10.36 30.62 0.32 -6.03 16 27 H 0.28 16.03 8.30 -92.70 -0.77 15.26 16 28 H 0.13 5.54 7.57 -2.91 -0.02 5.52 16 29 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 30 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.11 3.71 7.28 -2.91 -0.02 3.69 16 33 H 0.13 4.24 7.27 -2.39 -0.02 4.22 16 34 H 0.09 3.37 6.80 -2.39 -0.02 3.35 16 35 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -79.37 314.58 2.97 -76.40 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.15 Total: 8.29 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 4.16 Total: 5.68 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -2.86 Total: -91.73 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -0.14 Total: -54.40 kcal Atomic # 14 Polarization: 54.10 SS G_CDS: 1.66 Total: 55.76 kcal Total: -79.37 2.97 -76.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063448479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.586 kcal (2) G-P(sol) polarization free energy of solvation -79.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds