Wall clock time and date at job start Tue Mar 31 2020 03:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47044 * 2 1 4 4 C 1.37100 * 120.00153 * 90.33747 * 3 2 1 5 5 H 1.07997 * 120.00127 * 315.93579 * 4 3 2 6 6 C 1.38948 * 119.99895 * 135.93686 * 4 3 2 7 7 N 1.31414 * 120.00308 * 158.88822 * 6 4 3 8 8 Si 1.86805 * 120.00261 * 338.88694 * 6 4 3 9 9 H 1.48491 * 109.47398 * 94.87246 * 8 6 4 10 10 H 1.48501 * 109.47095 * 214.87838 * 8 6 4 11 11 H 1.48504 * 109.46725 * 334.87267 * 8 6 4 12 12 C 1.34777 * 119.99963 * 270.33826 * 3 2 1 13 13 O 1.21296 * 120.00048 * 183.58376 * 12 3 2 14 14 C 1.50702 * 119.99870 * 3.57873 * 12 3 2 15 15 H 1.08994 * 108.59076 * 38.13090 * 14 12 3 16 16 C 1.54401 * 108.66239 * 280.09990 * 14 12 3 17 17 S 1.84367 * 101.63802 * 221.13486 * 16 14 12 18 18 C 1.83564 * 93.20686 * 31.95293 * 17 16 14 19 19 C 1.53007 * 112.73636 * 83.47654 * 18 17 16 20 20 C 1.53769 * 110.25947 * 210.34983 * 18 17 16 21 21 C 1.54863 * 100.61299 * 142.55890 * 20 18 17 22 22 C 1.51128 * 104.39309 * 334.42123 * 21 20 18 23 23 O 1.21274 * 124.73742 * 188.88995 * 22 21 20 24 24 N 1.36798 * 110.78559 * 9.48690 * 22 21 20 25 25 H 1.09006 * 109.46876 * 54.46393 * 1 2 3 26 26 H 1.08991 * 109.47284 * 174.46483 * 1 2 3 27 27 H 1.09003 * 109.47153 * 294.46855 * 1 2 3 28 28 H 1.08998 * 109.46861 * 119.99578 * 2 1 3 29 29 H 1.08993 * 109.47253 * 239.99771 * 2 1 3 30 30 H 0.96999 * 120.00042 * 180.02562 * 7 6 4 31 31 H 1.09005 * 110.99577 * 339.21970 * 16 14 12 32 32 H 1.08996 * 110.99641 * 103.00665 * 16 14 12 33 33 H 1.08990 * 109.47542 * 61.00813 * 19 18 17 34 34 H 1.08997 * 109.46772 * 181.01423 * 19 18 17 35 35 H 1.09004 * 109.46896 * 301.00523 * 19 18 17 36 36 H 1.09002 * 111.18959 * 260.39972 * 20 18 17 37 37 H 1.09001 * 111.18454 * 24.67528 * 20 18 17 38 38 H 1.09000 * 110.44876 * 93.15270 * 21 20 18 39 39 H 1.09007 * 110.45038 * 215.69339 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2534 2.0252 1.1873 5 1 1.5407 1.9463 1.9948 6 6 3.4088 2.7794 1.3516 7 7 3.4595 3.7105 2.2777 8 14 4.8900 2.4700 0.2562 9 1 4.8611 3.4103 -0.8927 10 1 6.1355 2.6804 1.0370 11 1 4.8508 1.0731 -0.2462 12 6 2.2365 2.0188 -1.1672 13 8 2.7021 3.1389 -1.1686 14 6 1.9020 1.3402 -2.4705 15 1 0.9802 0.7732 -2.3405 16 6 3.0404 0.3585 -2.8228 17 16 3.2180 0.6306 -4.6376 18 6 2.7412 2.3996 -4.5233 19 6 3.9147 3.3050 -4.1437 20 6 2.0418 2.8472 -5.8175 21 6 0.9624 3.7983 -5.2442 22 6 0.7374 3.3043 -3.8337 23 8 -0.1467 3.6906 -3.0990 24 7 1.6758 2.3696 -3.4912 25 1 -0.3633 0.5973 -0.8363 26 1 -0.3633 -1.0228 -0.0991 27 1 -0.3633 0.4257 0.9354 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 4.2659 4.2373 2.3921 31 1 3.9587 0.6204 -2.2970 32 1 2.7498 -0.6699 -2.6081 33 1 4.6908 3.2325 -4.9054 34 1 3.5697 4.3365 -4.0734 35 1 4.3195 2.9910 -3.1815 36 1 2.7299 3.3816 -6.4726 37 1 1.5883 2.0008 -6.3332 38 1 1.3265 4.8256 -5.2344 39 1 0.0428 3.7247 -5.8247 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068916325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:19 Heat of formation + Delta-G solvation = -28.794811 kcal Electronic energy + Delta-G solvation = -24149.194118 eV Core-core repulsion = 20798.515856 eV Total energy + Delta-G solvation = -3350.678262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55848 -38.89565 -36.75850 -34.99906 -33.98315 -32.18398 -30.20611 -29.73098 -29.63727 -25.62750 -25.41893 -23.85149 -22.35023 -21.37328 -20.11524 -18.76402 -17.58518 -17.19197 -16.17195 -15.98680 -15.74301 -15.18113 -14.69830 -14.44690 -13.93904 -13.83963 -13.52150 -13.45943 -13.23843 -13.09320 -12.89427 -12.55338 -12.48788 -12.35875 -12.27752 -12.04881 -11.61102 -11.29580 -11.13892 -11.06491 -10.86102 -10.50842 -10.44094 -10.26738 -9.99846 -9.72729 -8.98424 -8.59812 -8.22985 -7.92576 -7.63476 -6.23241 -3.99714 1.58090 1.91730 2.63148 2.75759 3.19097 3.32132 3.53331 3.64810 4.13783 4.25966 4.31023 4.48466 4.63701 4.70270 4.82499 4.89090 5.11872 5.21481 5.29215 5.36974 5.44642 5.49433 5.53030 5.64836 5.70011 5.76320 5.80442 5.84407 5.93193 6.14514 6.32464 6.34445 6.40184 6.68154 7.23279 7.80884 7.95169 8.23288 8.72623 8.85838 9.38410 9.74195 10.82628 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.007541 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.557724 B = 3712.245048 C = 3888.517818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.458 5.458 4 C -0.350 4.350 5 H 0.094 0.906 6 C 0.094 3.906 7 N -0.861 5.861 8 Si 0.905 3.095 9 H -0.255 1.255 10 H -0.305 1.305 11 H -0.280 1.280 12 C 0.440 3.560 13 O -0.523 6.523 14 C 0.140 3.860 15 H 0.102 0.898 16 C -0.065 4.065 17 S -0.275 6.275 18 C 0.180 3.820 19 C -0.140 4.140 20 C -0.107 4.107 21 C -0.137 4.137 22 C 0.544 3.456 23 O -0.506 6.506 24 N -0.602 5.602 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.272 0.728 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 -7.024 -16.392 17.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 N -0.181 5.181 4 C -0.476 4.476 5 H 0.111 0.889 6 C -0.115 4.115 7 N -0.496 5.496 8 Si 0.736 3.264 9 H -0.180 1.180 10 H -0.234 1.234 11 H -0.206 1.206 12 C 0.226 3.774 13 O -0.403 6.403 14 C 0.032 3.968 15 H 0.120 0.880 16 C -0.214 4.214 17 S -0.045 6.045 18 C -0.016 4.016 19 C -0.200 4.200 20 C -0.147 4.147 21 C -0.178 4.178 22 C 0.332 3.668 23 O -0.379 6.379 24 N -0.340 5.340 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.128 0.872 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.717 -6.889 -16.658 18.041 hybrid contribution 0.530 0.408 0.727 0.988 sum -0.186 -6.481 -15.932 17.201 Atomic orbital electron populations 1.22182 0.96774 1.00701 1.02803 1.21685 0.94185 0.85498 1.01596 1.43627 1.59407 1.10035 1.05079 1.18754 1.06553 1.31015 0.91274 0.88880 1.25300 0.98304 0.93130 0.94767 1.69779 1.28512 1.17366 1.33907 0.86502 0.79962 0.78504 0.81461 1.18040 1.23411 1.20617 1.20456 0.84705 0.87343 0.84846 1.90549 1.45121 1.18999 1.85613 1.21178 0.99539 0.88214 0.87866 0.87992 1.24661 1.01149 1.02491 0.93054 1.87964 1.91989 1.13060 1.11483 1.24261 0.92249 0.92988 0.92134 1.22141 0.95510 0.99093 1.03247 1.22571 0.97521 1.00023 0.94564 1.22340 1.01450 1.01284 0.92756 1.21254 0.79755 0.77055 0.88712 1.90745 1.34286 1.56940 1.55880 1.49584 1.22066 1.37238 1.25133 0.93072 0.92602 0.91848 0.90071 0.92893 0.91839 0.87769 0.85614 0.90738 0.90882 0.90589 0.88414 0.88649 0.87190 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.01 37.16 0.37 -2.30 16 2 C 0.09 1.68 5.69 -4.04 -0.02 1.66 16 3 N -0.46 -10.88 2.12 -114.81 -0.24 -11.12 16 4 C -0.35 -9.90 9.67 -14.93 -0.14 -10.04 16 5 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 6 C 0.09 2.78 4.80 -17.47 -0.08 2.70 16 7 N -0.86 -26.58 13.96 55.50 0.77 -25.80 16 8 Si 0.91 23.51 24.96 -169.99 -4.24 19.27 16 9 H -0.25 -6.85 6.30 56.52 0.36 -6.49 16 10 H -0.31 -7.85 7.11 56.52 0.40 -7.44 16 11 H -0.28 -6.74 6.66 56.52 0.38 -6.36 16 12 C 0.44 10.41 5.03 -10.98 -0.06 10.35 16 13 O -0.52 -14.43 11.56 5.54 0.06 -14.36 16 14 C 0.14 2.56 2.85 -68.23 -0.19 2.37 16 15 H 0.10 1.75 5.89 -51.93 -0.31 1.44 16 16 C -0.06 -0.99 6.18 37.89 0.23 -0.76 16 17 S -0.27 -3.76 22.30 -107.50 -2.40 -6.16 16 18 C 0.18 2.56 0.87 -66.50 -0.06 2.50 16 19 C -0.14 -2.09 9.29 37.16 0.35 -1.74 16 20 C -0.11 -1.08 6.34 -25.35 -0.16 -1.24 16 21 C -0.14 -1.55 6.81 -26.69 -0.18 -1.73 16 22 C 0.54 9.71 8.39 -9.85 -0.08 9.63 16 23 O -0.51 -11.41 18.03 5.56 0.10 -11.31 16 24 N -0.60 -10.65 2.52 -152.00 -0.38 -11.03 16 25 H 0.05 0.87 6.98 -51.93 -0.36 0.51 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 29 H 0.05 0.78 5.02 -51.93 -0.26 0.52 16 30 H 0.27 7.89 8.31 -40.82 -0.34 7.55 16 31 H 0.10 1.80 7.28 -51.93 -0.38 1.42 16 32 H 0.13 1.52 7.06 -51.93 -0.37 1.15 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.43 7.54 -51.93 -0.39 1.04 16 36 H 0.10 0.74 8.01 -51.93 -0.42 0.32 16 37 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.11 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -36.51 320.32 -7.00 -43.52 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.47 Total: 0.77 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -0.03 Total: 11.39 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.15 Total: -47.95 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: 0.16 Total: -25.67 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.24 Total: 19.27 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -2.40 Total: -6.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.51 -7.00 -43.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068916325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.721 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds