Wall clock time and date at job start Tue Mar 31 2020 03:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47044 * 2 1 4 4 C 1.37100 * 120.00153 * 90.33747 * 3 2 1 5 5 H 1.07997 * 120.00127 * 315.93579 * 4 3 2 6 6 C 1.38948 * 119.99895 * 135.93686 * 4 3 2 7 7 N 1.31414 * 120.00308 * 158.88822 * 6 4 3 8 8 Si 1.86805 * 120.00261 * 338.88694 * 6 4 3 9 9 H 1.48491 * 109.47398 * 94.87246 * 8 6 4 10 10 H 1.48501 * 109.47095 * 214.87838 * 8 6 4 11 11 H 1.48504 * 109.46725 * 334.87267 * 8 6 4 12 12 C 1.34777 * 119.99963 * 270.33826 * 3 2 1 13 13 O 1.21296 * 120.00048 * 183.58376 * 12 3 2 14 14 C 1.50702 * 119.99870 * 3.57873 * 12 3 2 15 15 H 1.08994 * 108.59076 * 38.13090 * 14 12 3 16 16 C 1.54401 * 108.66239 * 280.09990 * 14 12 3 17 17 S 1.84367 * 101.63802 * 221.13486 * 16 14 12 18 18 C 1.83564 * 93.20686 * 31.95293 * 17 16 14 19 19 C 1.53007 * 112.73636 * 83.47654 * 18 17 16 20 20 C 1.53769 * 110.25947 * 210.34983 * 18 17 16 21 21 C 1.54863 * 100.61299 * 142.55890 * 20 18 17 22 22 C 1.51128 * 104.39309 * 334.42123 * 21 20 18 23 23 O 1.21274 * 124.73742 * 188.88995 * 22 21 20 24 24 N 1.36798 * 110.78559 * 9.48690 * 22 21 20 25 25 H 1.09006 * 109.46876 * 54.46393 * 1 2 3 26 26 H 1.08991 * 109.47284 * 174.46483 * 1 2 3 27 27 H 1.09003 * 109.47153 * 294.46855 * 1 2 3 28 28 H 1.08998 * 109.46861 * 119.99578 * 2 1 3 29 29 H 1.08993 * 109.47253 * 239.99771 * 2 1 3 30 30 H 0.96999 * 120.00042 * 180.02562 * 7 6 4 31 31 H 1.09005 * 110.99577 * 339.21970 * 16 14 12 32 32 H 1.08996 * 110.99641 * 103.00665 * 16 14 12 33 33 H 1.08990 * 109.47542 * 61.00813 * 19 18 17 34 34 H 1.08997 * 109.46772 * 181.01423 * 19 18 17 35 35 H 1.09004 * 109.46896 * 301.00523 * 19 18 17 36 36 H 1.09002 * 111.18959 * 260.39972 * 20 18 17 37 37 H 1.09001 * 111.18454 * 24.67528 * 20 18 17 38 38 H 1.09000 * 110.44876 * 93.15270 * 21 20 18 39 39 H 1.09007 * 110.45038 * 215.69339 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2534 2.0252 1.1873 5 1 1.5407 1.9463 1.9948 6 6 3.4088 2.7794 1.3516 7 7 3.4595 3.7105 2.2777 8 14 4.8900 2.4700 0.2562 9 1 4.8611 3.4103 -0.8927 10 1 6.1355 2.6804 1.0370 11 1 4.8508 1.0731 -0.2462 12 6 2.2365 2.0188 -1.1672 13 8 2.7021 3.1389 -1.1686 14 6 1.9020 1.3402 -2.4705 15 1 0.9802 0.7732 -2.3405 16 6 3.0404 0.3585 -2.8228 17 16 3.2180 0.6306 -4.6376 18 6 2.7412 2.3996 -4.5233 19 6 3.9147 3.3050 -4.1437 20 6 2.0418 2.8472 -5.8175 21 6 0.9624 3.7983 -5.2442 22 6 0.7374 3.3043 -3.8337 23 8 -0.1467 3.6906 -3.0990 24 7 1.6758 2.3696 -3.4912 25 1 -0.3633 0.5973 -0.8363 26 1 -0.3633 -1.0228 -0.0991 27 1 -0.3633 0.4257 0.9354 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 4.2659 4.2373 2.3921 31 1 3.9587 0.6204 -2.2970 32 1 2.7498 -0.6699 -2.6081 33 1 4.6908 3.2325 -4.9054 34 1 3.5697 4.3365 -4.0734 35 1 4.3195 2.9910 -3.1815 36 1 2.7299 3.3816 -6.4726 37 1 1.5883 2.0008 -6.3332 38 1 1.3265 4.8256 -5.2344 39 1 0.0428 3.7247 -5.8247 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068916325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:18 Heat of formation + Delta-G solvation = -55.529528 kcal Electronic energy + Delta-G solvation = -24150.353422 eV Core-core repulsion = 20798.515856 eV Total energy + Delta-G solvation = -3351.837566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.92355 -40.56690 -38.17118 -36.82966 -35.39567 -34.19671 -31.40315 -31.36816 -30.80150 -27.41463 -26.49959 -25.45280 -23.83639 -22.49221 -21.76431 -20.25313 -19.37271 -18.48711 -17.82953 -17.54222 -17.00581 -16.77573 -16.20795 -15.79377 -15.63414 -15.16545 -15.05671 -14.91292 -14.75429 -14.45388 -14.26534 -14.14099 -13.85451 -13.74528 -13.65433 -13.37636 -12.88258 -12.86781 -12.68145 -12.39891 -12.22337 -12.05845 -11.96973 -11.86960 -11.60558 -11.10999 -10.81671 -10.56934 -9.85390 -9.61582 -8.96308 -8.48144 -6.24811 0.48413 0.75736 1.14015 1.25797 1.28825 1.41353 1.51084 1.83668 2.36071 2.58872 2.95478 3.07344 3.23248 3.47133 3.53639 3.73810 3.80338 3.93415 4.06297 4.23047 4.25320 4.35331 4.40457 4.52910 4.57477 4.58139 4.73408 4.88652 4.93473 4.97464 4.98497 5.09819 5.16622 5.32454 5.64779 5.79253 5.96030 6.67538 6.82547 6.91074 7.26101 7.78133 8.61109 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.007541 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.557724 B = 3712.245048 C = 3888.517818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.087 3.913 3 N -0.474 5.474 4 C -0.349 4.349 5 H 0.061 0.939 6 C 0.042 3.958 7 N -0.912 5.912 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.304 1.304 11 H -0.249 1.249 12 C 0.435 3.565 13 O -0.571 6.571 14 C 0.144 3.856 15 H 0.116 0.884 16 C -0.072 4.072 17 S -0.227 6.227 18 C 0.164 3.836 19 C -0.138 4.138 20 C -0.091 4.091 21 C -0.124 4.124 22 C 0.527 3.473 23 O -0.571 6.571 24 N -0.616 5.616 25 H 0.037 0.963 26 H 0.103 0.897 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.272 0.728 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 -9.577 -20.709 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.035 4.035 3 N -0.197 5.197 4 C -0.477 4.477 5 H 0.078 0.922 6 C -0.162 4.162 7 N -0.549 5.549 8 Si 0.790 3.210 9 H -0.202 1.202 10 H -0.233 1.233 11 H -0.173 1.173 12 C 0.223 3.777 13 O -0.454 6.454 14 C 0.036 3.964 15 H 0.133 0.867 16 C -0.221 4.221 17 S 0.003 5.997 18 C -0.032 4.032 19 C -0.198 4.198 20 C -0.129 4.129 21 C -0.165 4.165 22 C 0.319 3.681 23 O -0.448 6.448 24 N -0.354 5.354 25 H 0.056 0.944 26 H 0.122 0.878 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.182 0.818 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.152 0.848 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.262 -9.517 -21.006 23.063 hybrid contribution 0.292 1.209 2.063 2.409 sum 0.030 -8.307 -18.943 20.685 Atomic orbital electron populations 1.22118 0.95468 1.03175 1.00854 1.21999 0.95197 0.82407 1.03912 1.43868 1.59706 1.12362 1.03786 1.18650 1.05482 1.31234 0.92285 0.92173 1.26067 1.01084 0.93017 0.96062 1.69888 1.29323 1.19236 1.36459 0.85574 0.76879 0.79558 0.78971 1.20163 1.23269 1.17278 1.21499 0.82572 0.87008 0.86629 1.90512 1.46850 1.21272 1.86718 1.21163 1.01192 0.88658 0.85376 0.86686 1.24669 0.98992 1.03396 0.95061 1.87789 1.91839 1.11449 1.08600 1.24590 0.91372 0.93963 0.93247 1.22129 0.96828 0.98777 1.02045 1.22690 0.97066 1.00499 0.92679 1.22453 1.03571 1.01983 0.88445 1.22651 0.78587 0.76181 0.90731 1.90702 1.36918 1.58948 1.58254 1.49879 1.23065 1.36950 1.25493 0.94377 0.87848 0.94404 0.89545 0.88729 0.91916 0.89767 0.81821 0.87243 0.91699 0.95004 0.84800 0.86825 0.85762 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 10.01 71.98 0.72 -4.14 16 2 C 0.09 2.96 5.69 86.38 0.49 3.45 16 3 N -0.47 -22.74 2.12 -635.54 -1.35 -24.08 16 4 C -0.35 -20.64 9.67 84.04 0.81 -19.83 16 5 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 6 C 0.04 2.57 4.80 84.93 0.41 2.98 16 7 N -0.91 -59.41 13.96 21.66 0.30 -59.11 16 8 Si 0.96 50.25 24.96 68.60 1.71 51.96 16 9 H -0.27 -15.18 6.30 99.48 0.63 -14.55 16 10 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 11 H -0.25 -11.46 6.66 99.48 0.66 -10.80 16 12 C 0.44 20.72 5.03 87.66 0.44 21.16 16 13 O -0.57 -32.54 11.56 -3.08 -0.04 -32.58 16 14 C 0.14 5.05 2.85 44.68 0.13 5.17 16 15 H 0.12 3.69 5.89 -2.39 -0.01 3.67 16 16 C -0.07 -1.97 6.18 72.46 0.45 -1.53 16 17 S -0.23 -5.20 22.30 -56.49 -1.26 -6.46 16 18 C 0.16 4.12 0.87 44.89 0.04 4.16 16 19 C -0.14 -3.85 9.29 71.98 0.67 -3.18 16 20 C -0.09 -1.35 6.34 31.49 0.20 -1.15 16 21 C -0.12 -2.37 6.81 30.62 0.21 -2.16 16 22 C 0.53 18.33 8.39 87.47 0.73 19.07 16 23 O -0.57 -26.39 18.03 -3.01 -0.05 -26.44 16 24 N -0.62 -20.84 2.52 -752.02 -1.89 -22.74 16 25 H 0.04 1.26 6.98 -2.38 -0.02 1.24 16 26 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 2.85 8.04 -2.39 -0.02 2.83 16 29 H 0.09 2.42 5.02 -2.39 -0.01 2.41 16 30 H 0.27 16.68 8.31 -92.71 -0.77 15.91 16 31 H 0.08 2.68 7.28 -2.38 -0.02 2.67 16 32 H 0.16 3.10 7.06 -2.39 -0.02 3.09 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.03 1.17 7.54 -2.39 -0.02 1.15 16 36 H 0.13 1.13 8.01 -2.39 -0.02 1.11 16 37 H 0.11 1.37 7.87 -2.39 -0.02 1.35 16 38 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.14 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -88.53 320.32 3.66 -84.87 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.93 Total: 10.56 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 5.30 Total: 24.01 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -2.94 Total: -105.93 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -0.09 Total: -59.02 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 1.71 Total: 51.96 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.26 Total: -6.46 kcal Total: -88.53 3.66 -84.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068916325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.340 kcal (2) G-P(sol) polarization free energy of solvation -88.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds