Wall clock time and date at job start Tue Mar 31 2020 04:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47152 * 2 1 4 4 H 1.08998 * 109.47466 * 54.99720 * 3 2 1 5 5 C 1.52997 * 109.47342 * 175.00221 * 3 2 1 6 6 N 1.46507 * 109.46753 * 294.99850 * 3 2 1 7 7 C 1.34780 * 119.99813 * 155.00089 * 6 3 2 8 8 O 1.21277 * 119.99843 * 359.97438 * 7 6 3 9 9 C 1.50696 * 119.99652 * 180.02562 * 7 6 3 10 10 S 1.81005 * 109.46917 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99839 * 179.97438 * 10 9 7 12 12 N 1.32384 * 126.26343 * 0.02562 * 11 10 9 13 13 N 1.28518 * 110.20980 * 179.97438 * 12 11 10 14 14 C 1.33096 * 109.74216 * 0.02562 * 13 12 11 15 15 C 1.39775 * 126.56594 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00085 * 174.27770 * 15 14 13 17 17 C 1.40078 * 119.99826 * 354.28233 * 15 14 13 18 18 N 1.30815 * 120.00177 * 6.02399 * 17 15 14 19 19 Si 1.86801 * 120.00143 * 186.02472 * 17 15 14 20 20 H 1.48495 * 109.47488 * 94.97829 * 19 17 15 21 21 H 1.48503 * 109.47079 * 214.98295 * 19 17 15 22 22 H 1.48503 * 109.47062 * 334.97862 * 19 17 15 23 23 N 1.36678 * 126.25710 * 179.71688 * 11 10 9 24 24 C 1.46503 * 127.14945 * 359.96511 * 23 11 10 25 25 H 1.09004 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47399 * 300.00030 * 1 2 3 27 27 H 1.08999 * 109.47405 * 60.00564 * 1 2 3 28 28 H 1.09001 * 109.47399 * 239.99970 * 2 1 3 29 29 H 1.08999 * 109.47405 * 119.99436 * 2 1 3 30 30 H 1.09003 * 109.46913 * 299.99631 * 5 3 2 31 31 H 1.08998 * 109.47249 * 59.99367 * 5 3 2 32 32 H 1.08996 * 109.47608 * 179.97438 * 5 3 2 33 33 H 0.97004 * 119.99900 * 335.00040 * 6 3 2 34 34 H 1.09005 * 109.47094 * 60.00206 * 9 7 6 35 35 H 1.08999 * 109.47337 * 299.99733 * 9 7 6 36 36 H 0.96996 * 120.00202 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.46650 * 90.02835 * 24 23 11 38 38 H 1.09000 * 109.46747 * 210.02544 * 24 23 11 39 39 H 1.08999 * 109.47324 * 330.02706 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0974 -1.2519 7 6 1.5256 3.4384 -1.2997 8 8 1.7318 4.1028 -0.3063 9 6 1.1263 4.1120 -2.5873 10 16 1.0413 5.9017 -2.3308 11 6 0.5689 6.4204 -3.9471 12 7 0.3590 5.6345 -4.9915 13 7 0.0273 6.3364 -6.0157 14 6 0.0046 7.6263 -5.6885 15 6 -0.3111 8.6942 -6.5333 16 1 -0.3868 9.6947 -6.1337 17 6 -0.5293 8.4667 -7.8981 18 7 -0.5544 7.2437 -8.3616 19 14 -0.7844 9.9098 -9.0565 20 1 0.5102 10.2740 -9.6862 21 1 -1.7589 9.5316 -10.1113 22 1 -1.3074 11.0711 -8.2928 23 7 0.3465 7.7072 -4.3503 24 6 0.4507 8.9202 -3.5354 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8532 0.9571 1.0571 31 1 3.9994 0.9053 -0.7161 32 1 3.9282 2.4720 0.1252 33 1 1.4871 1.5659 -2.0464 34 1 0.1500 3.7437 -2.9025 35 1 1.8646 3.8897 -3.3578 36 1 -0.7052 7.0862 -9.3067 37 1 1.4666 9.3109 -3.5939 38 1 -0.2485 9.6690 -3.9076 39 1 0.2116 8.6832 -2.4987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075322768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:22 Heat of formation + Delta-G solvation = 18.087674 kcal Electronic energy + Delta-G solvation = -21202.930261 eV Core-core repulsion = 17886.577727 eV Total energy + Delta-G solvation = -3316.352534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50384 -39.84217 -36.59342 -33.70142 -33.31474 -32.64892 -30.52496 -29.41645 -28.84902 -26.46925 -25.50699 -24.07192 -21.58193 -20.84795 -20.70089 -20.33227 -17.44290 -17.06464 -16.72024 -15.85967 -15.47910 -15.37360 -14.69254 -14.52326 -14.20859 -14.12665 -13.85397 -13.56903 -13.40907 -13.03246 -12.77248 -12.36168 -12.21607 -12.19817 -12.01309 -11.57138 -11.40476 -11.34076 -11.32759 -10.96157 -10.92703 -10.39642 -10.25150 -9.93045 -9.72628 -9.60553 -9.22411 -8.69940 -8.41732 -8.39328 -6.80340 -6.66106 -4.57361 1.84210 2.60929 2.80067 2.91124 3.06236 3.09923 3.19258 3.35629 3.87172 4.24191 4.41042 4.41214 4.71622 4.77359 4.80575 5.17310 5.28440 5.31262 5.33690 5.36480 5.49864 5.57952 5.63574 5.65758 5.67780 5.85466 5.91423 5.94994 6.04495 6.07420 6.38150 6.76103 6.89514 7.23730 7.35340 7.49088 7.88547 8.14164 8.17827 8.69905 8.85886 10.26735 10.62233 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.032530 B = 0.002930 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.540483 B = 9554.481180 C =10070.308412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C 0.141 3.859 4 H 0.089 0.911 5 C -0.165 4.165 6 N -0.723 5.723 7 C 0.536 3.464 8 O -0.527 6.527 9 C -0.134 4.134 10 S 0.018 5.982 11 C 0.032 3.968 12 N -0.290 5.290 13 N -0.334 5.334 14 C 0.347 3.653 15 C -0.448 4.448 16 H 0.084 0.916 17 C 0.079 3.921 18 N -0.737 5.737 19 Si 0.921 3.079 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.262 1.262 23 N -0.513 5.513 24 C 0.101 3.899 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.402 0.598 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.279 0.721 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -9.414 12.426 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.036 3.964 4 H 0.107 0.893 5 C -0.223 4.223 6 N -0.377 5.377 7 C 0.321 3.679 8 O -0.403 6.403 9 C -0.286 4.286 10 S 0.244 5.756 11 C -0.340 4.340 12 N -0.137 5.137 13 N -0.181 5.181 14 C 0.102 3.898 15 C -0.488 4.488 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.361 5.361 19 Si 0.744 3.256 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.186 1.186 23 N -0.215 5.215 24 C -0.044 4.044 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.237 0.763 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.874 -9.754 13.136 16.813 hybrid contribution -0.337 0.912 -1.476 1.767 sum 3.537 -8.842 11.660 15.055 Atomic orbital electron populations 1.21790 0.95206 1.01722 1.02508 1.21837 0.96679 0.95332 1.03027 1.21015 0.94946 0.92979 0.87423 0.89323 1.22194 0.95379 1.02877 1.01892 1.45988 1.71246 1.06610 1.13824 1.19911 0.76409 0.82312 0.89250 1.90714 1.49590 1.63757 1.36245 1.23394 1.07907 0.98012 0.99251 1.85049 1.88072 0.99963 1.02524 1.25700 1.21089 0.85895 1.01295 1.74498 1.15008 1.28143 0.96003 1.75421 1.27785 0.99296 1.15640 1.21626 0.94242 0.94979 0.78943 1.18110 1.46144 0.92718 0.91837 0.89747 1.25793 0.93454 0.96911 0.98511 1.70015 1.30271 1.20541 1.15293 0.86109 0.78900 0.80965 0.79583 1.19437 1.19993 1.18615 1.46028 1.59842 1.04826 1.10841 1.21513 1.01962 0.86449 0.94508 0.92564 0.92552 0.92301 0.91307 0.90443 0.91726 0.92417 0.91835 0.76290 0.86357 0.86334 0.91018 0.92425 0.90348 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.80 37.16 0.36 -0.75 16 2 C -0.13 -0.86 5.47 -26.73 -0.15 -1.01 16 3 C 0.14 1.28 2.58 -67.93 -0.17 1.11 16 4 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 5 C -0.17 -1.44 9.48 37.16 0.35 -1.08 16 6 N -0.72 -7.47 4.53 -53.80 -0.24 -7.71 16 7 C 0.54 7.62 7.81 -10.99 -0.09 7.54 16 8 O -0.53 -9.16 15.52 5.56 0.09 -9.07 16 9 C -0.13 -2.11 5.71 36.00 0.21 -1.90 16 10 S 0.02 0.36 20.92 -107.50 -2.25 -1.89 16 11 C 0.03 0.77 8.09 -87.27 -0.71 0.07 16 12 N -0.29 -7.87 11.62 30.89 0.36 -7.51 16 13 N -0.33 -10.01 10.50 31.26 0.33 -9.68 16 14 C 0.35 9.72 7.53 -154.81 -1.17 8.56 16 15 C -0.45 -11.89 9.05 -38.32 -0.35 -12.24 16 16 H 0.08 2.04 7.27 -52.48 -0.38 1.65 16 17 C 0.08 2.01 5.49 -17.29 -0.09 1.92 16 18 N -0.74 -20.18 11.96 55.56 0.66 -19.51 16 19 Si 0.92 18.51 29.57 -169.99 -5.03 13.48 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 N -0.51 -12.56 3.26 -123.18 -0.40 -12.96 16 24 C 0.10 1.88 10.89 59.85 0.65 2.53 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 3.27 8.60 -40.82 -0.35 2.92 16 34 H 0.12 1.83 8.14 -51.91 -0.42 1.40 16 35 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 36 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.37 7.49 -51.93 -0.39 0.98 16 39 H 0.07 1.12 7.85 -51.93 -0.41 0.72 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -34.38 347.34 -8.08 -42.46 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.69 Total: 2.42 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.15 Total: 4.74 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.71 Total: -57.37 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.25 Total: -1.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.38 -8.08 -42.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.547 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds