Wall clock time and date at job start Tue Mar 31 2020 04:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47152 * 2 1 4 4 H 1.08998 * 109.47466 * 54.99720 * 3 2 1 5 5 C 1.52997 * 109.47342 * 175.00221 * 3 2 1 6 6 N 1.46507 * 109.46753 * 294.99850 * 3 2 1 7 7 C 1.34780 * 119.99813 * 155.00089 * 6 3 2 8 8 O 1.21277 * 119.99843 * 359.97438 * 7 6 3 9 9 C 1.50696 * 119.99652 * 180.02562 * 7 6 3 10 10 S 1.81005 * 109.46917 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99839 * 179.97438 * 10 9 7 12 12 N 1.32384 * 126.26343 * 0.02562 * 11 10 9 13 13 N 1.28518 * 110.20980 * 179.97438 * 12 11 10 14 14 C 1.33096 * 109.74216 * 0.02562 * 13 12 11 15 15 C 1.39775 * 126.56594 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00085 * 174.27770 * 15 14 13 17 17 C 1.40078 * 119.99826 * 354.28233 * 15 14 13 18 18 N 1.30815 * 120.00177 * 6.02399 * 17 15 14 19 19 Si 1.86801 * 120.00143 * 186.02472 * 17 15 14 20 20 H 1.48495 * 109.47488 * 94.97829 * 19 17 15 21 21 H 1.48503 * 109.47079 * 214.98295 * 19 17 15 22 22 H 1.48503 * 109.47062 * 334.97862 * 19 17 15 23 23 N 1.36678 * 126.25710 * 179.71688 * 11 10 9 24 24 C 1.46503 * 127.14945 * 359.96511 * 23 11 10 25 25 H 1.09004 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47399 * 300.00030 * 1 2 3 27 27 H 1.08999 * 109.47405 * 60.00564 * 1 2 3 28 28 H 1.09001 * 109.47399 * 239.99970 * 2 1 3 29 29 H 1.08999 * 109.47405 * 119.99436 * 2 1 3 30 30 H 1.09003 * 109.46913 * 299.99631 * 5 3 2 31 31 H 1.08998 * 109.47249 * 59.99367 * 5 3 2 32 32 H 1.08996 * 109.47608 * 179.97438 * 5 3 2 33 33 H 0.97004 * 119.99900 * 335.00040 * 6 3 2 34 34 H 1.09005 * 109.47094 * 60.00206 * 9 7 6 35 35 H 1.08999 * 109.47337 * 299.99733 * 9 7 6 36 36 H 0.96996 * 120.00202 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.46650 * 90.02835 * 24 23 11 38 38 H 1.09000 * 109.46747 * 210.02544 * 24 23 11 39 39 H 1.08999 * 109.47324 * 330.02706 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0974 -1.2519 7 6 1.5256 3.4384 -1.2997 8 8 1.7318 4.1028 -0.3063 9 6 1.1263 4.1120 -2.5873 10 16 1.0413 5.9017 -2.3308 11 6 0.5689 6.4204 -3.9471 12 7 0.3590 5.6345 -4.9915 13 7 0.0273 6.3364 -6.0157 14 6 0.0046 7.6263 -5.6885 15 6 -0.3111 8.6942 -6.5333 16 1 -0.3868 9.6947 -6.1337 17 6 -0.5293 8.4667 -7.8981 18 7 -0.5544 7.2437 -8.3616 19 14 -0.7844 9.9098 -9.0565 20 1 0.5102 10.2740 -9.6862 21 1 -1.7589 9.5316 -10.1113 22 1 -1.3074 11.0711 -8.2928 23 7 0.3465 7.7072 -4.3503 24 6 0.4507 8.9202 -3.5354 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8532 0.9571 1.0571 31 1 3.9994 0.9053 -0.7161 32 1 3.9282 2.4720 0.1252 33 1 1.4871 1.5659 -2.0464 34 1 0.1500 3.7437 -2.9025 35 1 1.8646 3.8897 -3.3578 36 1 -0.7052 7.0862 -9.3067 37 1 1.4666 9.3109 -3.5939 38 1 -0.2485 9.6690 -3.9076 39 1 0.2116 8.6832 -2.4987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075322768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:21 Heat of formation + Delta-G solvation = -4.281912 kcal Electronic energy + Delta-G solvation = -21203.900279 eV Core-core repulsion = 17886.577727 eV Total energy + Delta-G solvation = -3317.322552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45128 -40.93578 -37.48774 -35.62138 -35.15118 -33.60224 -31.53006 -31.16884 -29.98043 -28.21422 -27.38891 -24.75518 -22.82609 -22.68016 -22.02720 -21.56646 -19.28282 -18.39383 -17.95057 -17.33612 -17.00074 -16.71189 -16.38509 -16.13604 -15.33479 -15.08223 -14.98425 -14.78920 -14.40216 -14.29520 -14.02452 -13.83133 -13.77083 -13.21389 -13.11288 -12.97065 -12.73796 -12.66020 -12.26481 -12.03073 -11.95484 -11.86407 -11.66811 -11.62067 -11.43833 -11.11201 -10.58691 -10.37766 -10.30289 -10.15627 -8.55730 -8.53470 -6.57725 0.29777 1.17065 1.19646 1.42713 1.43842 1.59459 1.61523 2.14762 2.19810 2.44062 2.51110 3.33283 3.60253 3.82364 3.99880 4.08422 4.11034 4.19761 4.36887 4.45321 4.50410 4.62255 4.64194 4.75983 4.85579 4.87887 4.96448 4.99308 5.12197 5.17683 5.29270 5.32459 5.42435 5.51815 5.57288 6.02644 6.22450 6.38897 6.76192 6.92103 7.08030 8.41198 8.63036 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.032530 B = 0.002930 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.540483 B = 9554.481180 C =10070.308412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C 0.138 3.862 4 H 0.071 0.929 5 C -0.161 4.161 6 N -0.704 5.704 7 C 0.542 3.458 8 O -0.561 6.561 9 C -0.130 4.130 10 S 0.040 5.960 11 C 0.044 3.956 12 N -0.326 5.326 13 N -0.387 5.387 14 C 0.318 3.682 15 C -0.472 4.472 16 H 0.102 0.898 17 C 0.030 3.970 18 N -0.786 5.786 19 Si 1.006 2.994 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.247 1.247 23 N -0.521 5.521 24 C 0.093 3.907 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.415 0.585 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.285 0.715 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 -9.382 13.221 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C 0.034 3.966 4 H 0.089 0.911 5 C -0.219 4.219 6 N -0.357 5.357 7 C 0.327 3.673 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.265 5.735 11 C -0.330 4.330 12 N -0.170 5.170 13 N -0.234 5.234 14 C 0.071 3.929 15 C -0.512 4.512 16 H 0.120 0.880 17 C -0.191 4.191 18 N -0.411 5.411 19 Si 0.825 3.175 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.171 1.171 23 N -0.222 5.222 24 C -0.050 4.050 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.253 0.747 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.245 -9.762 13.945 17.543 hybrid contribution -0.397 0.768 -1.521 1.749 sum 3.848 -8.994 12.424 15.813 Atomic orbital electron populations 1.21809 0.95706 1.02294 1.01618 1.21806 0.96098 0.93424 1.04614 1.21188 0.95408 0.94187 0.85846 0.91122 1.22161 0.94713 1.01570 1.03505 1.45920 1.69426 1.05286 1.15088 1.19599 0.76381 0.83405 0.87931 1.90704 1.51607 1.64726 1.37004 1.23478 1.08451 0.95785 1.00520 1.85023 1.87208 1.02646 0.98626 1.26598 1.17749 0.85912 1.02730 1.74371 1.17303 1.28811 0.96562 1.75287 1.29878 1.00717 1.17482 1.22042 0.95170 0.95014 0.80639 1.18622 1.46714 0.93183 0.92696 0.87957 1.26968 0.92168 1.00010 0.99966 1.70148 1.31502 1.23414 1.16085 0.84844 0.78953 0.76899 0.76789 1.18844 1.19428 1.17056 1.46357 1.59043 1.06361 1.10432 1.21854 1.03463 0.84842 0.94850 0.91289 0.93388 0.93287 0.89850 0.88664 0.89766 0.91270 0.94496 0.74749 0.85954 0.85969 0.90492 0.90716 0.89156 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.80 71.98 0.71 -1.26 16 2 C -0.12 -1.28 5.47 30.59 0.17 -1.12 16 3 C 0.14 2.28 2.58 44.99 0.12 2.40 16 4 H 0.07 1.48 7.58 -2.39 -0.02 1.46 16 5 C -0.16 -2.52 9.48 71.98 0.68 -1.84 16 6 N -0.70 -13.61 4.53 -442.53 -2.00 -15.62 16 7 C 0.54 15.03 7.81 87.66 0.68 15.72 16 8 O -0.56 -19.28 15.52 -3.02 -0.05 -19.33 16 9 C -0.13 -4.06 5.71 71.23 0.41 -3.65 16 10 S 0.04 1.51 20.92 -56.49 -1.18 0.33 16 11 C 0.04 2.13 8.09 179.18 1.45 3.58 16 12 N -0.33 -18.14 11.62 -56.17 -0.65 -18.80 16 13 N -0.39 -24.03 10.50 -55.02 -0.58 -24.61 16 14 C 0.32 18.22 7.53 133.23 1.00 19.22 16 15 C -0.47 -25.29 9.05 23.09 0.21 -25.08 16 16 H 0.10 4.87 7.27 -2.91 -0.02 4.85 16 17 C 0.03 1.53 5.49 85.29 0.47 2.00 16 18 N -0.79 -44.28 11.96 21.85 0.26 -44.02 16 19 Si 1.01 37.65 29.57 68.60 2.03 39.68 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 21 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 23 N -0.52 -25.54 3.26 -543.62 -1.77 -27.31 16 24 C 0.09 3.35 10.89 127.77 1.39 4.74 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.70 7.75 -2.39 -0.02 0.68 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.42 6.00 8.60 -92.71 -0.80 5.20 16 34 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 35 H 0.12 3.75 8.14 -2.40 -0.02 3.73 16 36 H 0.28 14.42 8.30 -92.71 -0.77 13.65 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.09 3.02 7.49 -2.39 -0.02 3.00 16 39 H 0.09 2.79 7.85 -2.39 -0.02 2.77 16 Total: -1.00 -77.44 347.34 3.60 -73.84 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.27 Total: 21.12 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.28 Total: 14.71 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -4.74 Total: -130.35 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.33 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.18 Total: 0.33 kcal Total: -77.44 3.60 -73.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.556 kcal (2) G-P(sol) polarization free energy of solvation -77.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds