Wall clock time and date at job start Tue Mar 31 2020 04:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47150 * 2 1 4 4 C 1.46502 * 119.99748 * 270.00278 * 3 2 1 5 5 C 1.53004 * 109.46880 * 269.99650 * 4 3 2 6 6 C 1.34774 * 120.00408 * 89.99620 * 3 2 1 7 7 O 1.21284 * 119.99911 * 0.02562 * 6 3 2 8 8 C 1.50698 * 120.00197 * 180.02562 * 6 3 2 9 9 S 1.81001 * 109.47052 * 179.97438 * 8 6 3 10 10 C 1.76202 * 99.99784 * 179.97438 * 9 8 6 11 11 N 1.32388 * 126.26021 * 359.97438 * 10 9 8 12 12 N 1.28516 * 110.20609 * 180.02562 * 11 10 9 13 13 C 1.33098 * 109.74302 * 0.02562 * 12 11 10 14 14 C 1.39776 * 126.56257 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99778 * 186.09356 * 14 13 12 16 16 C 1.40085 * 120.00068 * 6.08606 * 14 13 12 17 17 N 1.30808 * 119.99942 * 184.12744 * 16 14 13 18 18 Si 1.86799 * 119.99669 * 4.13543 * 16 14 13 19 19 H 1.48509 * 109.46950 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.47355 * 299.99259 * 18 16 14 21 21 H 1.48501 * 109.47215 * 59.99928 * 18 16 14 22 22 N 1.36669 * 126.25987 * 180.30691 * 10 9 8 23 23 C 1.46505 * 127.15024 * 359.97438 * 22 10 9 24 24 H 1.08999 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47279 * 299.99930 * 1 2 3 26 26 H 1.09000 * 109.47017 * 60.00478 * 1 2 3 27 27 H 1.08994 * 109.47498 * 239.99841 * 2 1 3 28 28 H 1.09000 * 109.47735 * 119.99316 * 2 1 3 29 29 H 1.09004 * 109.47214 * 29.99267 * 4 3 2 30 30 H 1.08993 * 109.47363 * 149.99835 * 4 3 2 31 31 H 1.08999 * 109.46839 * 300.00313 * 5 4 3 32 32 H 1.09007 * 109.47121 * 59.99773 * 5 4 3 33 33 H 1.09000 * 109.47311 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46642 * 59.99892 * 8 6 3 35 35 H 1.08993 * 109.47041 * 300.00220 * 8 6 3 36 36 H 0.97000 * 120.00392 * 354.84969 * 17 16 14 37 37 H 1.08991 * 109.47295 * 270.14314 * 23 22 10 38 38 H 1.08996 * 109.46934 * 30.14387 * 23 22 10 39 39 H 1.09000 * 109.46691 * 150.13746 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7075 1.8315 -1.7104 6 6 2.2429 2.0167 1.1671 7 8 2.0412 1.4449 2.2175 8 6 2.7447 3.4377 1.1671 9 16 2.9451 4.0068 2.8736 10 6 3.5246 5.6453 2.5835 11 7 3.7245 6.2075 1.4017 12 7 4.1504 7.4110 1.5489 13 6 4.2512 7.6969 2.8449 14 6 4.6796 8.9061 3.4000 15 1 4.8150 8.9920 4.4681 16 6 4.9333 10.0064 2.5710 17 7 5.4110 11.1126 3.0803 18 14 4.5894 9.8940 0.7384 19 1 4.9394 11.1830 0.0891 20 1 5.4061 8.8038 0.1474 21 1 3.1486 9.6064 0.5219 22 7 3.8561 6.5662 3.5374 23 6 3.8016 6.3930 4.9912 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.5816 1.6876 -2.0284 30 1 2.0955 3.1410 -1.1385 31 1 4.3882 2.2156 -0.9508 32 1 3.8745 0.7622 -1.8407 33 1 3.8890 2.3449 -2.6547 34 1 2.0263 4.0766 0.6533 35 1 3.7047 3.4840 0.6531 36 1 5.5193 11.1973 4.0405 37 1 2.8188 6.6914 5.3560 38 1 3.9790 5.3466 5.2393 39 1 4.5666 7.0122 5.4597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075322770.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:45 Heat of formation + Delta-G solvation = -0.983447 kcal Electronic energy + Delta-G solvation = -21741.801274 eV Core-core repulsion = 18424.621755 eV Total energy + Delta-G solvation = -3317.179520 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.84932 -41.09857 -37.32432 -35.93692 -35.40717 -33.46457 -32.05037 -31.27902 -29.82482 -28.40928 -27.22077 -24.52313 -24.14489 -23.33774 -22.18658 -20.19398 -20.12916 -18.53748 -18.27467 -17.43705 -17.06725 -16.82928 -16.55130 -15.83424 -15.55178 -15.16494 -14.92599 -14.87881 -14.75395 -14.30514 -14.29327 -14.14460 -13.57717 -13.54078 -13.40981 -13.10665 -12.95192 -12.84995 -12.59844 -12.06602 -11.99639 -11.91812 -11.72558 -11.54764 -11.40797 -11.08499 -10.92674 -10.57762 -10.36940 -9.82542 -9.49105 -8.72728 -6.86257 0.14503 0.97724 1.03615 1.37060 1.55249 1.60437 1.93811 1.95996 2.12459 2.20989 2.42552 3.04498 3.28055 3.90016 3.93003 4.00031 4.16058 4.21237 4.29405 4.32765 4.44286 4.46118 4.51369 4.55007 4.58474 4.68887 4.73707 4.90996 4.97891 5.03452 5.22930 5.28864 5.34870 5.37078 5.54336 5.67161 6.00306 6.16909 6.39023 6.56366 6.92783 7.92420 8.13547 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.003857 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.059505 B = 7258.181349 C = 8148.463098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.600 5.600 4 C 0.095 3.905 5 C -0.170 4.170 6 C 0.536 3.464 7 O -0.561 6.561 8 C -0.130 4.130 9 S 0.049 5.951 10 C 0.070 3.930 11 N -0.303 5.303 12 N -0.444 5.444 13 C 0.326 3.674 14 C -0.509 4.509 15 H 0.082 0.918 16 C 0.041 3.959 17 N -0.823 5.823 18 Si 1.146 2.854 19 H -0.298 1.298 20 H -0.274 1.274 21 H -0.293 1.293 22 N -0.514 5.514 23 C 0.092 3.908 24 H 0.083 0.917 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.286 0.714 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 -19.750 -6.799 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.014 4.014 3 N -0.333 5.333 4 C -0.027 4.027 5 C -0.228 4.228 6 C 0.323 3.677 7 O -0.441 6.441 8 C -0.282 4.282 9 S 0.274 5.726 10 C -0.305 4.305 11 N -0.146 5.146 12 N -0.293 5.293 13 C 0.079 3.921 14 C -0.550 4.550 15 H 0.101 0.899 16 C -0.179 4.179 17 N -0.449 5.449 18 Si 0.974 3.026 19 H -0.227 1.227 20 H -0.201 1.201 21 H -0.220 1.220 22 N -0.214 5.214 23 C -0.051 4.051 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.198 -19.638 -8.075 22.420 hybrid contribution 0.317 0.231 2.242 2.276 sum -6.882 -19.407 -5.832 21.401 Atomic orbital electron populations 1.22093 0.95113 1.03192 1.01702 1.21632 0.94958 0.80798 1.03963 1.48057 1.64642 1.14972 1.05609 1.21912 0.98202 0.98079 0.84502 1.22193 0.95600 1.02961 1.02088 1.19693 0.77140 0.86619 0.84274 1.90704 1.53451 1.67902 1.32029 1.23602 1.07909 0.97485 0.99198 1.85289 1.82367 0.97037 1.07897 1.26693 1.14859 1.00334 0.88648 1.74160 1.16864 1.03210 1.20374 1.73850 1.32918 1.09087 1.13428 1.21788 0.94036 0.88512 0.87740 1.19413 1.45072 0.93700 0.96829 0.89944 1.27828 0.88869 0.90378 1.10798 1.70668 1.30243 1.27136 1.16804 0.82215 0.77964 0.73097 0.69276 1.22704 1.20083 1.22004 1.46166 1.55889 1.11197 1.08100 1.21909 1.03833 1.03994 0.75316 0.89775 0.94748 0.91363 0.87268 0.91422 0.87006 0.90139 0.94108 0.91319 0.89801 0.85637 0.85792 0.90303 0.90270 0.88551 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.24 71.98 0.74 -1.49 16 2 C 0.11 1.61 6.13 86.38 0.53 2.14 16 3 N -0.60 -11.26 2.47 -821.81 -2.03 -13.30 16 4 C 0.09 1.28 5.93 86.38 0.51 1.79 16 5 C -0.17 -2.27 10.24 71.98 0.74 -1.53 16 6 C 0.54 14.28 7.69 87.66 0.67 14.95 16 7 O -0.56 -18.54 15.44 -3.04 -0.05 -18.59 16 8 C -0.13 -3.73 4.26 71.24 0.30 -3.43 16 9 S 0.05 1.70 20.92 -56.49 -1.18 0.52 16 10 C 0.07 3.09 8.09 179.18 1.45 4.54 16 11 N -0.30 -15.11 11.62 -56.17 -0.65 -15.76 16 12 N -0.44 -24.49 7.52 -55.02 -0.41 -24.91 16 13 C 0.33 17.41 7.27 133.23 0.97 18.38 16 14 C -0.51 -27.58 9.50 23.09 0.22 -27.36 16 15 H 0.08 4.34 7.46 -2.91 -0.02 4.32 16 16 C 0.04 2.24 5.52 85.29 0.47 2.71 16 17 N -0.82 -44.38 13.65 21.86 0.30 -44.08 16 18 Si 1.15 57.32 25.90 68.60 1.78 59.09 16 19 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 20 H -0.27 -14.20 6.76 99.48 0.67 -13.53 16 21 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 22 N -0.51 -23.52 3.26 -543.63 -1.77 -25.30 16 23 C 0.09 3.16 10.89 127.77 1.39 4.55 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.11 0.95 8.07 -2.39 -0.02 0.93 16 28 H 0.07 1.27 7.42 -2.39 -0.02 1.25 16 29 H 0.11 0.90 8.07 -2.39 -0.02 0.88 16 30 H 0.08 1.22 6.44 -2.39 -0.02 1.21 16 31 H 0.04 0.72 7.22 -2.39 -0.02 0.70 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.13 3.48 7.40 -2.39 -0.02 3.46 16 35 H 0.12 3.49 7.19 -2.40 -0.02 3.47 16 36 H 0.29 14.69 8.72 -92.71 -0.81 13.88 16 37 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.10 2.82 7.85 -2.39 -0.02 2.80 16 39 H 0.08 2.84 7.48 -2.39 -0.02 2.82 16 Total: -1.00 -71.08 339.68 4.95 -66.14 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 0.98 Total: 0.93 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 7.99 Total: 15.25 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -4.57 Total: -123.34 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.59 kcal Atomic # 14 Polarization: 57.32 SS G_CDS: 1.78 Total: 59.09 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.18 Total: 0.52 kcal Total: -71.08 4.95 -66.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322770.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.153 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds