Wall clock time and date at job start Tue Mar 31 2020 03:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99897 * 2 1 4 4 C 1.52997 * 109.47240 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47296 * 64.99441 * 4 3 2 6 6 C 1.46501 * 119.99532 * 90.00560 * 5 4 3 7 7 C 1.50694 * 109.47475 * 95.46841 * 6 5 4 8 8 H 1.08007 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00167 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99978 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00057 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47144 * 89.99519 * 11 9 7 13 13 H 1.48498 * 109.47104 * 209.99534 * 11 9 7 14 14 H 1.48506 * 109.46955 * 329.99347 * 11 9 7 15 15 C 1.34770 * 120.00298 * 269.72525 * 5 4 3 16 16 O 1.21571 * 119.99832 * 5.18786 * 15 5 4 17 17 C 1.47714 * 119.99990 * 185.18053 * 15 5 4 18 18 N 1.31800 * 126.51923 * 5.31389 * 17 15 5 19 19 N 1.28467 * 110.07529 * 179.87739 * 18 17 15 20 20 H 0.97004 * 124.88775 * 180.15318 * 19 18 17 21 21 C 1.35038 * 110.22991 * 0.39446 * 19 18 17 22 22 C 1.35363 * 107.22565 * 359.76356 * 21 19 18 23 23 N 1.48009 * 127.24582 * 179.97438 * 22 21 19 24 24 O 1.21793 * 120.00012 * 0.03671 * 23 22 21 25 25 O 1.21805 * 119.99606 * 180.02562 * 23 22 21 26 26 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47299 * 300.00166 * 1 2 3 28 28 H 1.09006 * 109.47028 * 60.00180 * 1 2 3 29 29 H 1.08998 * 109.47103 * 59.99499 * 3 2 1 30 30 H 1.09003 * 109.47268 * 299.99776 * 3 2 1 31 31 H 1.09005 * 109.46752 * 304.99349 * 4 3 2 32 32 H 1.08996 * 109.47377 * 185.00147 * 4 3 2 33 33 H 1.09009 * 109.46833 * 215.46862 * 6 5 4 34 34 H 1.09000 * 109.47241 * 335.46670 * 6 5 4 35 35 H 0.96996 * 120.00183 * 180.02562 * 10 9 7 36 36 H 1.07994 * 126.38530 * 179.74076 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.2864 1.4006 -2.4147 7 6 5.7685 1.6699 -2.4580 8 1 6.4144 1.2594 -1.6959 9 6 6.3000 2.4401 -3.4706 10 7 7.5934 2.6755 -3.5081 11 14 5.1828 3.1506 -4.7884 12 1 4.7011 4.4885 -4.3604 13 1 5.9380 3.2800 -6.0604 14 1 4.0212 2.2479 -4.9919 15 6 4.1002 -0.7751 -1.3337 16 8 3.7579 -1.4750 -0.4005 17 6 4.6525 -1.3928 -2.5565 18 7 5.1512 -0.7589 -3.5990 19 7 5.5437 -1.6045 -4.4829 20 1 5.9468 -1.3709 -5.3337 21 6 5.3095 -2.8652 -4.0596 22 6 4.7412 -2.7775 -2.8342 23 7 4.3040 -3.8948 -1.9674 24 8 4.4442 -5.0457 -2.3404 25 8 3.8043 -3.6632 -0.8810 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5683 0.8411 32 1 3.9785 2.1765 0.0889 33 1 3.9842 0.8837 -3.3256 34 1 3.7477 2.3450 -2.3372 35 1 7.9673 3.2176 -4.2202 36 1 5.5334 -3.7740 -4.5984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119105639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:36 Heat of formation + Delta-G solvation = 22.305077 kcal Electronic energy + Delta-G solvation = -25408.589995 eV Core-core repulsion = 21513.834376 eV Total energy + Delta-G solvation = -3894.755619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.01767 -41.21880 -39.00248 -37.29423 -35.90512 -35.07018 -32.61147 -32.25063 -31.43531 -29.76372 -27.61192 -26.26788 -26.00516 -24.17356 -22.66975 -21.95241 -21.26953 -19.49963 -18.30055 -17.93291 -17.20469 -17.03261 -16.96418 -16.60264 -16.12591 -15.66331 -15.53505 -15.08562 -14.62356 -14.22826 -13.75658 -13.48033 -13.05534 -12.53328 -12.32654 -12.17912 -11.75370 -11.55906 -11.19748 -11.05292 -10.91321 -10.82496 -10.61942 -10.53564 -10.34203 -10.18116 -9.76630 -9.65567 -9.49533 -9.36139 -9.17470 -8.69436 -7.73448 -6.20364 -4.16485 0.59268 1.70610 1.76084 2.23493 2.87342 3.11366 3.20531 3.22338 3.61712 3.88495 4.15522 4.25605 4.42092 4.56069 4.85675 5.11657 5.16818 5.35103 5.43369 5.56594 5.61714 5.64374 5.71545 5.84113 5.99937 6.31507 6.44837 6.63513 6.82126 6.86039 7.32131 7.46446 7.53087 7.71126 8.09357 8.24054 8.39837 8.83370 8.93446 9.40585 10.92763 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.007964 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.840753 B = 3514.971742 C = 5321.333305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.043 3.957 4 C 0.125 3.875 5 N -0.578 5.578 6 C 0.205 3.795 7 C -0.507 4.507 8 H 0.074 0.926 9 C 0.079 3.921 10 N -0.898 5.898 11 Si 0.866 3.134 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.265 1.265 15 C 0.585 3.415 16 O -0.491 6.491 17 C 0.055 3.945 18 N -0.164 5.164 19 N -0.371 5.371 20 H 0.459 0.541 21 C 0.068 3.932 22 C -0.125 4.125 23 N 0.058 4.942 24 O -0.212 6.212 25 O -0.082 6.082 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 -4.858 -2.168 9.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.035 4.035 4 C 0.001 3.999 5 N -0.310 5.310 6 C 0.084 3.916 7 C -0.546 4.546 8 H 0.092 0.908 9 C -0.123 4.123 10 N -0.537 5.537 11 Si 0.693 3.307 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.189 1.189 15 C 0.369 3.631 16 O -0.363 6.363 17 C -0.109 4.109 18 N 0.003 4.997 19 N -0.084 5.084 20 H 0.306 0.694 21 C -0.082 4.082 22 C -0.222 4.222 23 N 0.579 4.421 24 O -0.411 6.411 25 O -0.315 6.315 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.756 -3.795 -2.673 9.039 hybrid contribution -0.494 -0.043 -1.054 1.165 sum -8.250 -3.838 -3.727 9.832 Atomic orbital electron populations 1.22674 0.82519 1.02278 0.99021 1.88175 1.18186 1.26784 1.95121 1.23058 0.95258 0.85402 0.99759 1.21413 0.91186 0.99621 0.87633 1.47621 1.64524 1.05140 1.13746 1.20022 0.97511 0.90076 0.83987 1.21220 0.90612 1.31239 1.11542 0.90780 1.24742 0.94592 0.95835 0.97164 1.69904 1.11127 1.39237 1.33446 0.87023 0.81417 0.80182 0.82072 1.20156 1.21264 1.18937 1.16665 0.79213 0.82612 0.84644 1.90948 1.47789 1.60917 1.36654 1.22273 1.03433 0.88170 0.97046 1.75015 1.10403 1.16724 0.97598 1.43777 1.43760 1.02838 1.18058 0.69393 1.22538 0.99129 0.91881 0.94689 1.21088 1.17278 0.88142 0.95643 1.42326 0.98583 1.00329 1.00860 1.94474 1.62492 1.05200 1.78954 1.94768 1.40591 1.90469 1.05651 0.90016 0.94698 0.94909 0.92940 0.93508 0.89464 0.88469 0.93627 0.95606 0.92693 0.77849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.35 9.31 -47.83 -0.45 -6.80 16 3 C 0.04 0.66 6.28 37.16 0.23 0.89 16 4 C 0.12 2.18 5.82 -4.05 -0.02 2.15 16 5 N -0.58 -11.97 2.45 -176.23 -0.43 -12.40 16 6 C 0.21 4.47 3.82 -5.20 -0.02 4.45 16 7 C -0.51 -12.80 8.28 -34.44 -0.29 -13.08 16 8 H 0.07 2.14 8.06 -52.48 -0.42 1.72 16 9 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -25.11 13.96 55.43 0.77 -24.34 16 11 Si 0.87 19.11 27.47 -169.99 -4.67 14.44 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 15 C 0.59 12.80 7.32 -12.39 -0.09 12.71 16 16 O -0.49 -11.41 12.07 -24.15 -0.29 -11.71 16 17 C 0.06 1.12 6.71 -82.77 -0.56 0.57 16 18 N -0.16 -3.11 7.79 33.42 0.26 -2.85 16 19 N -0.37 -5.04 6.83 30.47 0.21 -4.84 16 20 H 0.46 4.32 8.96 -190.44 -1.71 2.61 16 21 C 0.07 0.87 11.77 -17.17 -0.20 0.67 16 22 C -0.12 -2.24 7.25 -79.73 -0.58 -2.82 16 23 N 0.06 1.14 4.45 34.07 0.15 1.29 16 24 O -0.21 -3.88 19.07 -29.46 -0.56 -4.45 16 25 O -0.08 -1.79 15.63 -37.22 -0.58 -2.37 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.57 7.49 -51.93 -0.39 1.18 16 32 H 0.10 1.55 8.07 -51.93 -0.42 1.13 16 33 H 0.05 1.01 4.98 -51.92 -0.26 0.75 16 34 H 0.03 0.54 7.46 -51.93 -0.39 0.15 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.20 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 315.63 15.07 4.76 4.76 Total: -1.00 -34.05 315.63 -6.63 -40.68 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.29 Total: -0.43 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.51 Total: 9.01 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.96 Total: -43.14 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.88 Total: -25.32 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.67 Total: 14.44 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.05 -6.63 -40.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119105639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.983 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds