Wall clock time and date at job start Tue Mar 31 2020 03:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99897 * 2 1 4 4 C 1.52997 * 109.47240 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47296 * 64.99441 * 4 3 2 6 6 C 1.46501 * 119.99532 * 90.00560 * 5 4 3 7 7 C 1.50694 * 109.47475 * 95.46841 * 6 5 4 8 8 H 1.08007 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00167 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99978 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00057 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47144 * 89.99519 * 11 9 7 13 13 H 1.48498 * 109.47104 * 209.99534 * 11 9 7 14 14 H 1.48506 * 109.46955 * 329.99347 * 11 9 7 15 15 C 1.34770 * 120.00298 * 269.72525 * 5 4 3 16 16 O 1.21571 * 119.99832 * 5.18786 * 15 5 4 17 17 C 1.47714 * 119.99990 * 185.18053 * 15 5 4 18 18 N 1.31800 * 126.51923 * 5.31389 * 17 15 5 19 19 N 1.28467 * 110.07529 * 179.87739 * 18 17 15 20 20 H 0.97004 * 124.88775 * 180.15318 * 19 18 17 21 21 C 1.35038 * 110.22991 * 0.39446 * 19 18 17 22 22 C 1.35363 * 107.22565 * 359.76356 * 21 19 18 23 23 N 1.48009 * 127.24582 * 179.97438 * 22 21 19 24 24 O 1.21793 * 120.00012 * 0.03671 * 23 22 21 25 25 O 1.21805 * 119.99606 * 180.02562 * 23 22 21 26 26 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47299 * 300.00166 * 1 2 3 28 28 H 1.09006 * 109.47028 * 60.00180 * 1 2 3 29 29 H 1.08998 * 109.47103 * 59.99499 * 3 2 1 30 30 H 1.09003 * 109.47268 * 299.99776 * 3 2 1 31 31 H 1.09005 * 109.46752 * 304.99349 * 4 3 2 32 32 H 1.08996 * 109.47377 * 185.00147 * 4 3 2 33 33 H 1.09009 * 109.46833 * 215.46862 * 6 5 4 34 34 H 1.09000 * 109.47241 * 335.46670 * 6 5 4 35 35 H 0.96996 * 120.00183 * 180.02562 * 10 9 7 36 36 H 1.07994 * 126.38530 * 179.74076 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.2864 1.4006 -2.4147 7 6 5.7685 1.6699 -2.4580 8 1 6.4144 1.2594 -1.6959 9 6 6.3000 2.4401 -3.4706 10 7 7.5934 2.6755 -3.5081 11 14 5.1828 3.1506 -4.7884 12 1 4.7011 4.4885 -4.3604 13 1 5.9380 3.2800 -6.0604 14 1 4.0212 2.2479 -4.9919 15 6 4.1002 -0.7751 -1.3337 16 8 3.7579 -1.4750 -0.4005 17 6 4.6525 -1.3928 -2.5565 18 7 5.1512 -0.7589 -3.5990 19 7 5.5437 -1.6045 -4.4829 20 1 5.9468 -1.3709 -5.3337 21 6 5.3095 -2.8652 -4.0596 22 6 4.7412 -2.7775 -2.8342 23 7 4.3040 -3.8948 -1.9674 24 8 4.4442 -5.0457 -2.3404 25 8 3.8043 -3.6632 -0.8810 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5683 0.8411 32 1 3.9785 2.1765 0.0889 33 1 3.9842 0.8837 -3.3256 34 1 3.7477 2.3450 -2.3372 35 1 7.9673 3.2176 -4.2202 36 1 5.5334 -3.7740 -4.5984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119105639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:36 Heat of formation + Delta-G solvation = -1.686603 kcal Electronic energy + Delta-G solvation = -25409.630352 eV Core-core repulsion = 21513.834376 eV Total energy + Delta-G solvation = -3895.795976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.33244 -42.67526 -40.56093 -38.57074 -37.37515 -36.72281 -34.49159 -33.62008 -32.77982 -31.20592 -29.35285 -27.61707 -27.19219 -25.57491 -24.43140 -23.32642 -22.65805 -20.82311 -19.77884 -19.39868 -19.03893 -18.52733 -18.27313 -18.07258 -17.45855 -17.01125 -16.94123 -16.40964 -16.11301 -15.78575 -15.16576 -14.89874 -14.62880 -14.25805 -13.92446 -13.43365 -13.12719 -13.04374 -12.72958 -12.59271 -12.41565 -12.33418 -12.04239 -11.99570 -11.92730 -11.70484 -11.60878 -11.09232 -10.87925 -10.85507 -10.61723 -10.49438 -9.38261 -8.19352 -6.20683 -0.80753 0.37140 0.39286 0.85417 1.39123 1.42944 1.51983 1.70390 2.18510 2.30720 2.40163 2.99711 3.12031 3.17258 3.31434 3.58291 4.00440 4.17420 4.23046 4.32629 4.43663 4.54370 4.57778 4.62741 4.79179 4.86123 4.90914 5.04906 5.38638 5.54338 5.64570 5.79584 6.26000 6.38264 6.39274 6.59354 6.74604 6.78793 7.29513 7.42559 8.97457 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.007964 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.840753 B = 3514.971742 C = 5321.333305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.049 3.951 4 C 0.116 3.884 5 N -0.583 5.583 6 C 0.216 3.784 7 C -0.497 4.497 8 H 0.022 0.978 9 C 0.031 3.969 10 N -0.948 5.948 11 Si 0.932 3.068 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.244 1.244 15 C 0.572 3.428 16 O -0.515 6.515 17 C 0.028 3.972 18 N -0.194 5.194 19 N -0.353 5.353 20 H 0.479 0.521 21 C 0.124 3.876 22 C -0.160 4.160 23 N 0.064 4.936 24 O -0.161 6.161 25 O -0.170 6.170 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.264 0.736 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -5.151 -4.803 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.028 4.028 4 C -0.006 4.006 5 N -0.315 5.315 6 C 0.094 3.906 7 C -0.536 4.536 8 H 0.040 0.960 9 C -0.166 4.166 10 N -0.589 5.589 11 Si 0.756 3.244 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.167 1.167 15 C 0.357 3.643 16 O -0.389 6.389 17 C -0.136 4.136 18 N -0.028 5.028 19 N -0.069 5.069 20 H 0.330 0.670 21 C -0.027 4.027 22 C -0.257 4.257 23 N 0.580 4.420 24 O -0.377 6.377 25 O -0.380 6.380 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -8.944 -3.961 -5.165 11.062 hybrid contribution -0.015 -0.123 -0.341 0.363 sum -8.959 -4.084 -5.507 11.281 Atomic orbital electron populations 1.22833 0.80469 1.02914 1.00588 1.88131 1.20596 1.28067 1.95450 1.23019 0.93167 0.85086 1.01527 1.21628 0.93406 0.99538 0.86046 1.47731 1.64382 1.04977 1.14369 1.19833 0.95136 0.90793 0.84799 1.21161 0.91809 1.30543 1.10075 0.95971 1.25458 0.95741 0.96075 0.99354 1.70061 1.13423 1.40708 1.34699 0.85969 0.79930 0.79657 0.78883 1.19751 1.21022 1.16712 1.17081 0.79067 0.82882 0.85303 1.90928 1.48831 1.61358 1.37763 1.22163 1.04735 0.89600 0.97104 1.74853 1.11237 1.18471 0.98260 1.43847 1.42424 1.02728 1.17912 0.66962 1.23346 0.94176 0.92954 0.92176 1.21289 1.20177 0.86914 0.97353 1.42485 0.98032 1.00740 1.00780 1.94405 1.59600 1.05593 1.78080 1.94811 1.44929 1.90817 1.07429 0.89988 0.92477 0.93843 0.89777 0.92843 0.90960 0.87321 0.93120 0.94042 0.92675 0.71871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -14.09 9.31 -136.93 -1.27 -15.37 16 3 C 0.05 1.47 6.28 71.98 0.45 1.92 16 4 C 0.12 4.14 5.82 86.38 0.50 4.64 16 5 N -0.58 -24.64 2.45 -829.74 -2.04 -26.68 16 6 C 0.22 9.33 3.82 85.63 0.33 9.65 16 7 C -0.50 -25.48 8.28 25.60 0.21 -25.27 16 8 H 0.02 1.34 8.06 -2.91 -0.02 1.32 16 9 C 0.03 1.61 5.47 84.66 0.46 2.08 16 10 N -0.95 -53.76 13.96 21.45 0.30 -53.46 16 11 Si 0.93 38.25 27.47 68.60 1.88 40.13 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 13 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.24 -9.11 6.54 99.48 0.65 -8.46 16 15 C 0.57 25.97 7.32 86.75 0.63 26.61 16 16 O -0.52 -25.35 12.07 24.22 0.29 -25.05 16 17 C 0.03 1.16 6.71 42.46 0.29 1.44 16 18 N -0.19 -7.13 7.79 -48.18 -0.38 -7.50 16 19 N -0.35 -8.47 6.83 -57.51 -0.39 -8.87 16 20 H 0.48 7.13 8.96 -219.99 -1.97 5.15 16 21 C 0.12 2.69 11.77 83.54 0.98 3.67 16 22 C -0.16 -5.52 7.25 36.52 0.26 -5.26 16 23 N 0.06 2.45 4.45 -46.13 -0.21 2.25 16 24 O -0.16 -5.51 19.07 18.90 0.36 -5.15 16 25 O -0.17 -7.72 15.63 26.29 0.41 -7.30 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 2.75 7.49 -2.38 -0.02 2.74 16 32 H 0.11 3.50 8.07 -2.39 -0.02 3.48 16 33 H 0.05 2.17 4.98 -2.38 -0.01 2.16 16 34 H 0.04 1.66 7.46 -2.39 -0.02 1.65 16 35 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 36 H 0.27 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -78.99 315.63 3.45 -75.54 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -0.89 Total: 10.01 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 5.37 Total: 21.45 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -2.71 Total: -94.26 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.21 Total: -52.87 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 1.88 Total: 40.13 kcal Total: -78.99 3.45 -75.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119105639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.858 kcal (2) G-P(sol) polarization free energy of solvation -78.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds