Wall clock time and date at job start Tue Mar 31 2020 04:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30302 * 126.33874 * 90.02582 * 4 3 2 6 6 N 1.28526 * 110.07912 * 179.97438 * 5 4 3 7 7 C 1.31289 * 109.85218 * 359.97438 * 6 5 4 8 8 S 1.76200 * 126.48201 * 179.97438 * 7 6 5 9 9 N 1.36530 * 107.03454 * 359.77532 * 7 6 5 10 10 C 1.46503 * 127.14435 * 180.23188 * 9 7 6 11 11 C 1.50710 * 109.46897 * 270.14538 * 10 9 7 12 12 O 1.21278 * 119.99587 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99638 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99654 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47044 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.47021 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99965 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00004 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00248 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47276 * 59.99988 * 20 18 16 22 22 H 1.48501 * 109.47479 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47260 * 299.99880 * 20 18 16 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.40998 * 100.00142 * 89.97423 * 8 7 6 32 32 H 1.08996 * 109.47133 * 30.14070 * 10 9 7 33 33 H 1.09001 * 109.47256 * 150.15079 * 10 9 7 34 34 H 0.97001 * 120.00476 * 0.02562 * 13 11 10 35 35 H 1.09007 * 109.46983 * 299.99840 * 14 13 11 36 36 H 1.08997 * 109.47368 * 59.99856 * 14 13 11 37 37 H 1.08996 * 109.46913 * 299.99209 * 15 14 13 38 38 H 1.08997 * 109.47299 * 59.99638 * 15 14 13 39 39 H 0.97000 * 119.99902 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3186 1.4433 -1.0506 6 7 5.5526 1.4437 -0.6912 7 6 5.6354 1.4438 0.6190 8 16 7.1154 1.4437 1.5752 9 7 4.3579 1.4486 1.1005 10 6 3.9420 1.4553 2.5053 11 6 3.7997 0.0367 2.9938 12 8 4.0242 -0.8886 2.2426 13 7 3.4241 -0.2035 4.2657 14 6 3.2864 -1.5824 4.7407 15 6 2.8519 -1.5755 6.2077 16 6 2.7109 -2.9940 6.6966 17 1 2.9107 -3.8181 6.0277 18 6 2.3267 -3.2398 7.9977 19 7 2.0839 -2.2363 8.8124 20 14 2.1512 -4.9981 8.6035 21 1 3.4547 -5.6981 8.4760 22 1 1.7296 -4.9913 10.0274 23 1 1.1291 -5.7027 7.7886 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 7.3216 2.8323 1.7074 32 1 4.6921 1.9721 3.1038 33 1 2.9853 1.9693 2.5985 34 1 3.2450 0.5367 4.8665 35 1 2.5362 -2.0996 4.1424 36 1 4.2431 -2.0962 4.6472 37 1 3.6018 -1.0583 6.8062 38 1 1.8951 -1.0618 6.3009 39 1 1.8133 -2.4092 9.7277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273137221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:12 Heat of formation + Delta-G solvation = 26.909829 kcal Electronic energy + Delta-G solvation = -21763.862492 eV Core-core repulsion = 18447.892515 eV Total energy + Delta-G solvation = -3315.969976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -43.17593 -39.53581 -35.75641 -35.20200 -34.73086 -32.99613 -31.05950 -30.29126 -28.36451 -27.19710 -24.80178 -23.07188 -22.38342 -21.49557 -20.97174 -20.32360 -18.40359 -17.65017 -17.09120 -16.49463 -15.92782 -15.70291 -15.28114 -15.10318 -14.78649 -14.65869 -14.52758 -13.72716 -13.52524 -13.42635 -12.65629 -12.41487 -12.37638 -12.07586 -11.87773 -11.56916 -11.39329 -11.33522 -11.10739 -10.93880 -10.91585 -10.74322 -10.69162 -10.46065 -9.96737 -9.60207 -9.34205 -9.29628 -8.76425 -8.64030 -8.48635 -6.17911 -4.21252 0.78750 1.08441 2.12876 2.19049 2.55233 2.71191 3.26052 3.29286 3.30530 3.37092 3.97547 4.22184 4.34171 4.45228 4.57649 4.70040 4.78076 4.97098 5.07308 5.19599 5.27818 5.39067 5.52625 5.56955 5.68867 5.92379 6.00502 6.12803 6.15775 6.18489 6.38197 6.55252 6.64328 7.37481 7.48130 7.66853 7.79552 8.14122 8.29452 8.39800 8.84141 9.44358 10.93496 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.003485 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.942914 B = 8033.629352 C = 9166.156836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.035 4.035 4 C 0.215 3.785 5 N -0.292 5.292 6 N -0.240 5.240 7 C 0.152 3.848 8 S 0.000 6.000 9 N -0.441 5.441 10 C 0.078 3.922 11 C 0.493 3.507 12 O -0.525 6.525 13 N -0.712 5.712 14 C 0.123 3.877 15 C 0.014 3.986 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.400 0.600 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 12.941 -12.243 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.075 4.075 4 C -0.053 4.053 5 N -0.134 5.134 6 N -0.083 5.083 7 C -0.223 4.223 8 S 0.150 5.850 9 N -0.133 5.133 10 C -0.050 4.050 11 C 0.275 3.725 12 O -0.401 6.401 13 N -0.363 5.363 14 C 0.001 3.999 15 C -0.024 4.024 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.234 0.766 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.154 12.057 -13.529 18.250 hybrid contribution -1.245 0.332 1.731 2.158 sum 0.908 12.389 -11.798 17.132 Atomic orbital electron populations 1.21743 0.94700 1.02421 1.01792 1.21539 0.96269 0.94349 1.03971 1.20234 0.82921 0.99783 1.04557 1.25199 0.96808 1.01051 0.82235 1.74106 0.96390 1.19186 1.23688 1.74747 1.11997 1.14347 1.07244 1.25807 0.89140 1.12631 0.94734 1.87388 1.21361 1.11460 1.64768 1.46501 1.06114 1.53077 1.07576 1.21901 1.04902 0.98571 0.79576 1.20285 0.78800 0.90007 0.83422 1.90783 1.49408 1.44806 1.55078 1.46251 1.67761 1.11431 1.10853 1.21814 1.00900 0.78880 0.98294 1.19323 0.97000 0.98344 0.87711 1.20983 1.46959 0.91743 0.96616 0.92287 1.24976 0.94990 0.97422 0.96722 1.69934 1.46256 1.30794 1.06263 0.86571 0.78764 0.84523 0.77702 1.20039 1.21191 1.20077 0.92534 0.92509 0.92074 0.90880 0.91018 0.87930 0.89885 0.93997 0.85349 0.85475 0.76644 0.92329 0.92195 0.95825 0.95900 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 3 C -0.04 -0.33 5.59 -27.89 -0.16 -0.48 16 4 C 0.22 2.81 7.32 -153.99 -1.13 1.68 16 5 N -0.29 -4.62 12.18 32.99 0.40 -4.21 16 6 N -0.24 -3.93 12.23 30.68 0.38 -3.56 16 7 C 0.15 2.15 8.37 -88.34 -0.74 1.41 16 8 S 0.00 0.00 25.78 -107.50 -2.77 -2.77 16 9 N -0.44 -5.55 2.30 -114.81 -0.26 -5.81 16 10 C 0.08 0.75 6.36 -5.19 -0.03 0.72 16 11 C 0.49 6.94 7.87 -10.98 -0.09 6.85 16 12 O -0.52 -9.78 15.73 5.56 0.09 -9.70 16 13 N -0.71 -10.24 5.56 -60.29 -0.33 -10.57 16 14 C 0.12 2.35 5.61 -4.04 -0.02 2.33 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -13.86 9.11 -34.44 -0.31 -14.17 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 20 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.98 7.40 -51.93 -0.38 0.59 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.57 7.26 -51.93 -0.38 0.20 16 31 H 0.10 0.77 9.55 96.90 0.93 1.70 16 32 H 0.13 0.91 7.86 -51.93 -0.41 0.50 16 33 H 0.13 0.78 7.25 -51.93 -0.38 0.40 16 34 H 0.40 4.58 8.47 -40.82 -0.35 4.23 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -33.68 351.65 -8.31 -41.99 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.31 Total: 0.30 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.51 Total: -2.33 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.91 Total: -48.48 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.77 Total: -2.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.68 -8.31 -41.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273137221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.901 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds