Wall clock time and date at job start Tue Mar 31 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.50695 * 109.47406 * 239.99792 * 2 1 3 5 5 H 1.07999 * 120.00252 * 245.34710 * 4 2 1 6 6 C 1.37882 * 120.00017 * 65.35332 * 4 2 1 7 7 N 1.31512 * 119.99807 * 5.14042 * 6 4 2 8 8 Si 1.86797 * 119.99961 * 185.14713 * 6 4 2 9 9 H 1.48503 * 109.47312 * 84.99700 * 8 6 4 10 10 H 1.48495 * 109.47272 * 324.99487 * 8 6 4 11 11 H 1.48502 * 109.47008 * 204.99631 * 8 6 4 12 12 N 1.46505 * 109.47075 * 119.99685 * 2 1 3 13 13 C 1.34774 * 120.00085 * 275.00460 * 12 2 1 14 14 O 1.21280 * 119.99975 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00029 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.12254 * 300.70392 * 15 13 12 17 17 C 1.55824 * 110.14322 * 62.36885 * 15 13 12 18 18 S 1.83953 * 100.69090 * 162.31463 * 17 15 13 19 19 C 1.82955 * 96.07873 * 340.10845 * 18 17 15 20 20 C 1.52994 * 112.06935 * 113.84232 * 19 18 17 21 21 C 1.53879 * 110.31330 * 239.44699 * 19 18 17 22 22 C 1.56691 * 100.21449 * 142.11615 * 21 19 18 23 23 C 1.51271 * 104.79721 * 335.68914 * 22 21 19 24 24 O 1.21285 * 124.79215 * 190.11708 * 23 22 21 25 25 N 1.34785 * 110.41594 * 10.10889 * 23 22 21 26 26 H 1.08992 * 109.47480 * 294.97156 * 1 2 3 27 27 H 1.08993 * 109.46657 * 54.97693 * 1 2 3 28 28 H 1.09004 * 109.46489 * 174.97207 * 1 2 3 29 29 H 0.96997 * 120.00294 * 180.02562 * 7 6 4 30 30 H 0.97005 * 120.00023 * 95.00075 * 12 2 1 31 31 H 1.09001 * 111.17158 * 280.17704 * 17 15 13 32 32 H 1.09005 * 111.16757 * 44.45679 * 17 15 13 33 33 H 1.08999 * 109.47492 * 61.01536 * 20 19 18 34 34 H 1.09005 * 109.47093 * 181.01489 * 20 19 18 35 35 H 1.08999 * 109.47153 * 301.01115 * 20 19 18 36 36 H 1.09009 * 111.10564 * 260.51095 * 21 19 18 37 37 H 1.08999 * 111.10859 * 24.63085 * 21 19 18 38 38 H 1.08996 * 110.74670 * 216.57719 * 22 21 19 39 39 H 1.09000 * 109.85533 * 94.35011 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5803 -1.6361 -1.1336 6 6 1.7928 -0.1786 -2.4797 7 7 1.2154 0.9975 -2.5940 8 14 2.2880 -1.1286 -4.0099 9 1 1.2114 -2.0868 -4.3678 10 1 3.5453 -1.8730 -3.7451 11 1 2.5010 -0.1811 -5.1334 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6488 -0.7287 3.5878 16 1 1.9899 -1.5610 3.8352 17 6 4.1006 -1.2446 3.3551 18 16 4.6401 -1.5392 5.0889 19 6 3.3812 -0.4648 5.8687 20 6 2.3858 -1.2641 6.7119 21 6 4.0608 0.6517 6.6809 22 6 3.0923 1.8453 6.3770 23 6 2.4390 1.4872 5.0605 24 8 1.7534 2.2394 4.4009 25 7 2.7265 0.2141 4.7239 26 1 -0.3634 0.4338 0.9315 27 1 -0.3632 0.5898 -0.8415 28 1 -0.3632 -1.0238 -0.0901 29 1 1.0465 1.3716 -3.4728 30 1 2.2491 -1.6318 1.1527 31 1 4.1019 -2.1703 2.7797 32 1 4.7164 -0.4840 2.8750 33 1 2.9177 -1.7762 7.5137 34 1 1.6468 -0.5872 7.1406 35 1 1.8836 -1.9985 6.0821 36 1 4.0830 0.4067 7.7429 37 1 5.0638 0.8551 6.3058 38 1 3.6471 2.7790 6.2853 39 1 2.3432 1.9241 7.1649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299434058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:38 Heat of formation + Delta-G solvation = -49.820143 kcal Electronic energy + Delta-G solvation = -22871.120027 eV Core-core repulsion = 19519.530038 eV Total energy + Delta-G solvation = -3351.589989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68173 -38.69392 -36.81272 -34.84842 -33.90766 -32.34670 -30.43096 -29.91348 -28.62694 -25.52702 -25.27658 -24.74702 -21.96367 -21.27417 -19.74766 -18.93471 -17.56098 -17.12016 -16.16741 -15.96585 -15.72071 -15.26997 -14.91266 -14.60521 -14.08394 -13.93557 -13.76117 -13.57811 -13.14878 -13.05298 -12.69268 -12.60502 -12.36020 -12.30454 -12.10230 -11.71349 -11.40302 -11.22479 -11.07811 -10.99294 -10.81298 -10.48532 -10.35684 -10.29343 -9.65097 -9.09817 -9.06612 -8.74847 -8.55834 -7.99457 -7.95906 -6.14978 -4.22662 1.39567 1.91114 2.55329 2.75011 3.22698 3.24234 3.30409 3.31755 3.81370 4.06488 4.20123 4.34599 4.41374 4.47966 4.70264 4.82882 5.08356 5.09562 5.19091 5.24155 5.35444 5.36175 5.42449 5.54414 5.61208 5.67169 5.82213 6.02141 6.77865 6.88373 7.08390 7.23123 7.39789 7.51719 7.65291 7.82888 8.04794 8.29404 8.58994 8.76785 9.05888 9.43961 10.93294 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.004209 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.579595 B = 6650.148978 C = 7291.502957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.267 3.733 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.706 5.706 13 C 0.490 3.510 14 O -0.499 6.499 15 C 0.133 3.867 16 H 0.112 0.888 17 C -0.070 4.070 18 S -0.275 6.275 19 C 0.168 3.832 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.144 4.144 23 C 0.534 3.466 24 O -0.463 6.463 25 N -0.612 5.612 26 H 0.017 0.983 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 -6.155 19.574 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.165 3.835 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.728 3.272 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.355 5.355 13 C 0.270 3.730 14 O -0.373 6.373 15 C 0.026 3.974 16 H 0.130 0.870 17 C -0.220 4.220 18 S -0.046 6.046 19 C -0.029 4.029 20 C -0.197 4.197 21 C -0.149 4.149 22 C -0.185 4.185 23 C 0.320 3.680 24 O -0.331 6.331 25 N -0.351 5.351 26 H 0.036 0.964 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.801 -5.275 19.358 20.885 hybrid contribution -0.485 -0.523 -1.472 1.636 sum 5.316 -5.799 17.886 19.539 Atomic orbital electron populations 1.22009 0.98707 0.99487 0.99741 1.18756 0.90683 0.94362 0.79675 0.92840 1.21144 1.37127 1.08803 0.90375 0.92058 1.24898 0.94916 0.94705 0.99072 1.69960 1.41814 1.15816 1.24223 0.86485 0.78888 0.79608 0.82240 1.20437 1.19894 1.21129 1.46478 1.65541 1.13427 1.10101 1.19948 0.80577 0.88224 0.84210 1.90942 1.48259 1.14480 1.83634 1.22214 0.96163 0.91810 0.87197 0.87045 1.24916 0.96455 1.05870 0.94773 1.87782 1.46513 1.64336 1.05936 1.24125 0.93319 0.94828 0.90589 1.22080 0.98097 0.99963 0.99520 1.23077 0.99251 0.91952 1.00668 1.22737 0.99774 1.00240 0.95765 1.20753 0.80775 0.79442 0.87049 1.90884 1.35263 1.51620 1.55355 1.49568 1.62610 1.11954 1.11016 0.96387 0.90658 0.95117 0.92511 0.78109 0.85777 0.87660 0.90358 0.91067 0.91164 0.88560 0.88591 0.87375 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.26 37.16 0.34 -3.17 16 2 C 0.27 6.79 2.43 -69.08 -0.17 6.62 16 3 H 0.05 1.61 7.56 -51.93 -0.39 1.22 16 4 C -0.54 -14.06 8.67 -34.44 -0.30 -14.36 16 5 H 0.06 1.51 7.72 -52.49 -0.41 1.11 16 6 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 7 N -0.88 -25.23 11.98 55.43 0.66 -24.56 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.71 -14.32 5.02 -54.93 -0.28 -14.60 16 13 C 0.49 9.85 7.21 -10.99 -0.08 9.78 16 14 O -0.50 -12.63 12.76 -18.77 -0.24 -12.87 16 15 C 0.13 1.94 3.31 -66.84 -0.22 1.72 16 16 H 0.11 1.38 7.73 -51.93 -0.40 0.98 16 17 C -0.07 -0.86 6.95 38.66 0.27 -0.59 16 18 S -0.28 -3.02 22.19 -107.50 -2.39 -5.40 16 19 C 0.17 1.73 0.90 -66.47 -0.06 1.67 16 20 C -0.14 -1.10 9.12 37.15 0.34 -0.77 16 21 C -0.11 -0.90 6.46 -24.28 -0.16 -1.06 16 22 C -0.14 -1.42 6.87 -25.61 -0.18 -1.59 16 23 C 0.53 8.60 7.93 -10.70 -0.08 8.52 16 24 O -0.46 -10.16 14.95 -18.77 -0.28 -10.44 16 25 N -0.61 -8.82 3.15 -151.09 -0.48 -9.30 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 2.04 6.84 -51.93 -0.36 1.68 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.39 6.53 8.53 -40.82 -0.35 6.18 16 31 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.44 8.12 -51.93 -0.42 1.02 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.60 7.73 -51.93 -0.40 0.20 16 36 H 0.10 0.52 7.97 -51.92 -0.41 0.11 16 37 H 0.10 0.82 7.87 -51.93 -0.41 0.41 16 38 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -34.83 330.69 -9.06 -43.89 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.64 Total: 4.23 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -0.39 Total: 8.51 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.09 Total: -48.46 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.52 Total: -23.31 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.39 Total: -5.40 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.83 -9.06 -43.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299434058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.927 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds