Wall clock time and date at job start Tue Mar 31 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.50695 * 109.47406 * 239.99792 * 2 1 3 5 5 H 1.07999 * 120.00252 * 245.34710 * 4 2 1 6 6 C 1.37882 * 120.00017 * 65.35332 * 4 2 1 7 7 N 1.31512 * 119.99807 * 5.14042 * 6 4 2 8 8 Si 1.86797 * 119.99961 * 185.14713 * 6 4 2 9 9 H 1.48503 * 109.47312 * 84.99700 * 8 6 4 10 10 H 1.48495 * 109.47272 * 324.99487 * 8 6 4 11 11 H 1.48502 * 109.47008 * 204.99631 * 8 6 4 12 12 N 1.46505 * 109.47075 * 119.99685 * 2 1 3 13 13 C 1.34774 * 120.00085 * 275.00460 * 12 2 1 14 14 O 1.21280 * 119.99975 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00029 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.12254 * 300.70392 * 15 13 12 17 17 C 1.55824 * 110.14322 * 62.36885 * 15 13 12 18 18 S 1.83953 * 100.69090 * 162.31463 * 17 15 13 19 19 C 1.82955 * 96.07873 * 340.10845 * 18 17 15 20 20 C 1.52994 * 112.06935 * 113.84232 * 19 18 17 21 21 C 1.53879 * 110.31330 * 239.44699 * 19 18 17 22 22 C 1.56691 * 100.21449 * 142.11615 * 21 19 18 23 23 C 1.51271 * 104.79721 * 335.68914 * 22 21 19 24 24 O 1.21285 * 124.79215 * 190.11708 * 23 22 21 25 25 N 1.34785 * 110.41594 * 10.10889 * 23 22 21 26 26 H 1.08992 * 109.47480 * 294.97156 * 1 2 3 27 27 H 1.08993 * 109.46657 * 54.97693 * 1 2 3 28 28 H 1.09004 * 109.46489 * 174.97207 * 1 2 3 29 29 H 0.96997 * 120.00294 * 180.02562 * 7 6 4 30 30 H 0.97005 * 120.00023 * 95.00075 * 12 2 1 31 31 H 1.09001 * 111.17158 * 280.17704 * 17 15 13 32 32 H 1.09005 * 111.16757 * 44.45679 * 17 15 13 33 33 H 1.08999 * 109.47492 * 61.01536 * 20 19 18 34 34 H 1.09005 * 109.47093 * 181.01489 * 20 19 18 35 35 H 1.08999 * 109.47153 * 301.01115 * 20 19 18 36 36 H 1.09009 * 111.10564 * 260.51095 * 21 19 18 37 37 H 1.08999 * 111.10859 * 24.63085 * 21 19 18 38 38 H 1.08996 * 110.74670 * 216.57719 * 22 21 19 39 39 H 1.09000 * 109.85533 * 94.35011 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5803 -1.6361 -1.1336 6 6 1.7928 -0.1786 -2.4797 7 7 1.2154 0.9975 -2.5940 8 14 2.2880 -1.1286 -4.0099 9 1 1.2114 -2.0868 -4.3678 10 1 3.5453 -1.8730 -3.7451 11 1 2.5010 -0.1811 -5.1334 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6488 -0.7287 3.5878 16 1 1.9899 -1.5610 3.8352 17 6 4.1006 -1.2446 3.3551 18 16 4.6401 -1.5392 5.0889 19 6 3.3812 -0.4648 5.8687 20 6 2.3858 -1.2641 6.7119 21 6 4.0608 0.6517 6.6809 22 6 3.0923 1.8453 6.3770 23 6 2.4390 1.4872 5.0605 24 8 1.7534 2.2394 4.4009 25 7 2.7265 0.2141 4.7239 26 1 -0.3634 0.4338 0.9315 27 1 -0.3632 0.5898 -0.8415 28 1 -0.3632 -1.0238 -0.0901 29 1 1.0465 1.3716 -3.4728 30 1 2.2491 -1.6318 1.1527 31 1 4.1019 -2.1703 2.7797 32 1 4.7164 -0.4840 2.8750 33 1 2.9177 -1.7762 7.5137 34 1 1.6468 -0.5872 7.1406 35 1 1.8836 -1.9985 6.0821 36 1 4.0830 0.4067 7.7429 37 1 5.0638 0.8551 6.3058 38 1 3.6471 2.7790 6.2853 39 1 2.3432 1.9241 7.1649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299434058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:38 Heat of formation + Delta-G solvation = -74.346228 kcal Electronic energy + Delta-G solvation = -22872.183558 eV Core-core repulsion = 19519.530038 eV Total energy + Delta-G solvation = -3352.653520 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82399 -40.28276 -38.06222 -36.75429 -35.09448 -34.24804 -31.36790 -31.23693 -30.12110 -27.36541 -26.30301 -26.03913 -23.36035 -22.50036 -21.38162 -20.31241 -18.87996 -18.46009 -17.63096 -17.26251 -17.02734 -16.76039 -16.44894 -15.64984 -15.57868 -15.35554 -14.84180 -14.70521 -14.57201 -14.27982 -14.02066 -13.83679 -13.65265 -13.37761 -13.25869 -13.00836 -12.95748 -12.83915 -12.73438 -12.39496 -12.28467 -12.14831 -11.96192 -11.44695 -11.16693 -10.90257 -10.65325 -10.49700 -10.01534 -9.82035 -8.83900 -8.21735 -6.37897 0.50706 0.94702 1.43188 1.45236 1.46699 1.55196 1.60506 1.71024 2.28856 2.48494 3.10771 3.14530 3.22714 3.50066 3.68749 3.82244 3.85866 3.94293 4.21903 4.38759 4.51735 4.57496 4.67965 4.74557 4.79687 4.80633 4.97764 4.99342 5.03741 5.06599 5.24402 5.36925 5.54375 5.57905 5.82849 5.98493 6.12788 6.70505 6.84587 7.13325 7.30006 7.49800 8.87463 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.004209 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.579595 B = 6650.148978 C = 7291.502957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.274 3.726 3 H -0.006 1.006 4 C -0.544 4.544 5 H 0.080 0.920 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.975 3.025 9 H -0.269 1.269 10 H -0.260 1.260 11 H -0.290 1.290 12 N -0.697 5.697 13 C 0.484 3.516 14 O -0.556 6.556 15 C 0.139 3.861 16 H 0.141 0.859 17 C -0.072 4.072 18 S -0.251 6.251 19 C 0.163 3.837 20 C -0.134 4.134 21 C -0.099 4.099 22 C -0.132 4.132 23 C 0.516 3.484 24 O -0.540 6.540 25 N -0.625 5.625 26 H 0.008 0.992 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.265 0.735 30 H 0.407 0.593 31 H 0.150 0.850 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.239 -9.262 21.707 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.171 3.829 3 H 0.012 0.988 4 C -0.582 4.582 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.799 3.201 9 H -0.194 1.194 10 H -0.184 1.184 11 H -0.216 1.216 12 N -0.348 5.348 13 C 0.267 3.733 14 O -0.433 6.433 15 C 0.033 3.967 16 H 0.158 0.842 17 C -0.221 4.221 18 S -0.022 6.022 19 C -0.032 4.032 20 C -0.194 4.194 21 C -0.138 4.138 22 C -0.172 4.172 23 C 0.306 3.694 24 O -0.414 6.414 25 N -0.364 5.364 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.243 0.757 31 H 0.168 0.832 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.417 -8.477 21.547 24.313 hybrid contribution -0.953 0.459 -2.075 2.329 sum 6.464 -8.018 19.471 22.028 Atomic orbital electron populations 1.21820 0.98581 0.99962 0.98071 1.18302 0.90740 0.91949 0.81951 0.98804 1.21502 1.36946 1.09243 0.90532 0.90173 1.25880 0.94803 0.95433 1.02649 1.70136 1.43302 1.17760 1.24902 0.85317 0.79145 0.78039 0.77592 1.19414 1.18385 1.21613 1.46152 1.65381 1.14202 1.09102 1.20907 0.79150 0.87734 0.85483 1.90942 1.50373 1.17271 1.84725 1.22232 0.98060 0.91829 0.84622 0.84187 1.24862 0.94254 1.06325 0.96697 1.87726 1.46645 1.63982 1.03824 1.24558 0.93650 0.95469 0.89522 1.22129 0.97853 0.99769 0.99670 1.23190 0.98173 0.89787 1.02670 1.22782 1.00460 1.01265 0.92740 1.22018 0.79773 0.79229 0.88427 1.90840 1.38770 1.53658 1.58134 1.49772 1.62294 1.12133 1.12196 0.97260 0.93292 0.93080 0.92634 0.75736 0.83187 0.89719 0.87687 0.90400 0.91670 0.84438 0.88835 0.86630 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 9.26 71.98 0.67 -5.87 16 2 C 0.27 14.55 2.43 44.24 0.11 14.65 16 3 H -0.01 -0.39 7.56 -2.39 -0.02 -0.41 16 4 C -0.54 -28.73 8.67 25.60 0.22 -28.51 16 5 H 0.08 3.84 7.72 -2.91 -0.02 3.82 16 6 C 0.01 0.67 5.29 84.66 0.45 1.12 16 7 N -0.92 -54.79 11.98 21.45 0.26 -54.53 16 8 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 11 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 12 N -0.70 -28.84 5.02 -446.09 -2.24 -31.07 16 13 C 0.48 20.17 7.21 87.66 0.63 20.80 16 14 O -0.56 -30.14 12.76 20.23 0.26 -29.88 16 15 C 0.14 3.95 3.31 44.97 0.15 4.10 16 16 H 0.14 3.16 7.73 -2.39 -0.02 3.14 16 17 C -0.07 -1.63 6.95 72.96 0.51 -1.12 16 18 S -0.25 -4.69 22.19 -56.49 -1.25 -5.95 16 19 C 0.16 2.86 0.90 44.93 0.04 2.90 16 20 C -0.13 -1.64 9.12 71.98 0.66 -0.98 16 21 C -0.10 -1.24 6.46 32.18 0.21 -1.04 16 22 C -0.13 -2.33 6.87 31.32 0.22 -2.11 16 23 C 0.52 16.93 7.93 87.84 0.70 17.62 16 24 O -0.54 -25.31 14.95 20.22 0.30 -25.01 16 25 N -0.63 -17.59 3.15 -750.31 -2.37 -19.96 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.05 2.78 6.84 -2.39 -0.02 2.76 16 28 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.41 13.33 8.53 -92.70 -0.79 12.54 16 31 H 0.15 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.08 2.29 8.12 -2.38 -0.02 2.27 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.06 0.89 7.73 -2.39 -0.02 0.87 16 36 H 0.14 0.68 7.97 -2.38 -0.02 0.66 16 37 H 0.09 1.27 7.87 -2.39 -0.02 1.26 16 38 H 0.12 1.90 8.14 -2.39 -0.02 1.89 16 39 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -83.26 330.69 1.81 -81.45 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.27 Total: 19.27 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 4.55 Total: 21.57 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -4.35 Total: -105.56 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: 0.56 Total: -54.89 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -1.25 Total: -5.95 kcal Total: -83.26 1.81 -81.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299434058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.106 kcal (2) G-P(sol) polarization free energy of solvation -83.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds