Wall clock time and date at job start Tue Mar 31 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99734 * 2 1 4 4 C 1.50698 * 109.46838 * 84.99900 * 3 2 1 5 5 H 1.07998 * 120.00443 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99978 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99713 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00145 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46960 * 90.00674 * 8 6 4 10 10 H 1.48502 * 109.47097 * 210.00312 * 8 6 4 11 11 H 1.48504 * 109.47479 * 330.00538 * 8 6 4 12 12 S 1.65598 * 120.00431 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40459 * 208.82075 * 12 2 1 14 14 O 1.42102 * 106.40118 * 341.73870 * 12 2 1 15 15 N 1.65596 * 107.21742 * 95.27547 * 12 2 1 16 16 C 1.47423 * 125.65418 * 285.65336 * 15 12 2 17 17 C 1.54903 * 104.83557 * 155.83491 * 16 15 12 18 18 C 1.55161 * 101.58153 * 37.01211 * 17 16 15 19 19 C 1.47023 * 125.64498 * 105.34730 * 15 12 2 20 20 H 1.09002 * 109.88499 * 300.51053 * 19 15 12 21 21 C 1.53004 * 109.88462 * 61.67989 * 19 15 12 22 22 F 1.39895 * 109.47215 * 173.21630 * 21 19 15 23 23 F 1.39898 * 109.46823 * 293.22195 * 21 19 15 24 24 H 1.08999 * 109.47561 * 264.93083 * 1 2 3 25 25 H 1.08996 * 109.47508 * 24.93596 * 1 2 3 26 26 H 1.09002 * 109.47200 * 144.93590 * 1 2 3 27 27 H 1.08992 * 109.47067 * 204.99552 * 3 2 1 28 28 H 1.08999 * 109.47183 * 324.99999 * 3 2 1 29 29 H 0.97001 * 120.00068 * 180.02562 * 7 6 4 30 30 H 1.08999 * 110.37116 * 274.67980 * 16 15 12 31 31 H 1.09004 * 110.36215 * 36.88811 * 16 15 12 32 32 H 1.08999 * 111.00484 * 155.08726 * 17 16 15 33 33 H 1.09003 * 111.00265 * 278.90055 * 17 16 15 34 34 H 1.09000 * 110.71875 * 82.86376 * 18 17 16 35 35 H 1.08999 * 110.71711 * 205.95802 * 18 17 16 36 36 H 1.09003 * 109.46990 * 53.22068 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 1.4154 5 1 1.9281 1.1939 2.2331 6 6 3.0005 2.9505 1.6665 7 7 3.5032 3.6470 0.6707 8 14 3.1782 3.5668 3.4209 9 1 4.4329 3.0323 4.0085 10 1 3.2242 5.0511 3.4218 11 1 2.0188 3.1070 4.2270 12 16 2.2931 -1.4341 0.0006 13 8 3.5280 -1.1841 0.6577 14 8 1.3727 -2.4287 0.4282 15 7 2.6641 -1.7865 -1.5743 16 6 1.7153 -2.2721 -2.5927 17 6 2.3421 -1.8592 -3.9477 18 6 3.8535 -2.0745 -3.6702 19 6 3.9932 -1.6609 -2.1901 20 1 4.3371 -0.6288 -2.1226 21 6 4.9835 -2.5897 -1.4846 22 9 6.2022 -2.5802 -2.1714 23 9 5.1841 -2.1473 -0.1726 24 1 -0.3634 -0.0908 1.0236 25 1 -0.3634 0.9318 -0.4332 26 1 -0.3634 -0.8412 -0.5904 27 1 3.1857 1.1178 -0.4342 28 1 1.6501 2.0043 -0.5894 29 1 3.9673 4.4803 0.8473 30 1 1.6179 -3.3562 -2.5343 31 1 0.7429 -1.7971 -2.4622 32 1 1.9962 -2.5083 -4.7521 33 1 2.1307 -0.8140 -4.1736 34 1 4.1259 -3.1207 -3.8096 35 1 4.4583 -1.4314 -4.3096 36 1 4.5831 -3.6034 -1.4690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352513403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:43 Heat of formation + Delta-G solvation = -165.741567 kcal Electronic energy + Delta-G solvation = -24255.046598 eV Core-core repulsion = 20344.200349 eV Total energy + Delta-G solvation = -3910.846249 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.095 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.65108 -46.60132 -38.61376 -36.61203 -35.51352 -35.13746 -32.43355 -30.97642 -30.46204 -27.79430 -25.24842 -24.97272 -22.37153 -21.96912 -21.33111 -18.87338 -17.60729 -17.58813 -16.73267 -16.60997 -16.37043 -15.92761 -15.64488 -14.99837 -14.40341 -13.93164 -13.62106 -13.52346 -13.27149 -13.23090 -13.08002 -12.97289 -12.73813 -12.35336 -12.11777 -11.75326 -11.62668 -11.42779 -11.37447 -11.16476 -11.12537 -11.08296 -11.04369 -10.73819 -10.63383 -10.48890 -9.99600 -9.77865 -9.06869 -8.43334 -8.08880 -6.05922 -4.09353 1.06614 3.31976 3.34221 3.40222 3.43760 3.78597 4.06106 4.20083 4.26594 4.41648 4.46986 4.84059 4.88600 5.02192 5.10909 5.26020 5.29428 5.39043 5.44711 5.57626 5.63340 5.69487 5.79181 5.98037 6.00040 6.09503 6.28433 6.35853 6.51114 7.17430 7.36869 7.57086 7.91655 8.20212 8.92686 9.55847 11.02769 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.006290 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.412998 B = 4450.764251 C = 4966.790167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.994 5.994 3 C 0.260 3.740 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.273 1.273 12 S 2.776 3.224 13 O -0.932 6.932 14 O -0.991 6.991 15 N -1.016 6.016 16 C 0.119 3.881 17 C -0.128 4.128 18 C -0.119 4.119 19 C 0.107 3.893 20 H 0.104 0.896 21 C 0.235 3.765 22 F -0.204 7.204 23 F -0.164 7.164 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.263 0.737 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -11.746 -11.841 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.837 5.837 3 C 0.138 3.862 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.198 1.198 12 S 2.785 3.215 13 O -0.915 6.915 14 O -0.975 6.975 15 N -0.853 5.853 16 C -0.007 4.007 17 C -0.167 4.167 18 C -0.158 4.158 19 C -0.001 4.001 20 H 0.122 0.878 21 C 0.179 3.821 22 F -0.185 7.185 23 F -0.145 7.145 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.298 -12.063 -10.998 16.485 hybrid contribution 0.156 0.764 0.702 1.049 sum -2.142 -11.299 -10.296 15.436 Atomic orbital electron populations 1.21237 0.80088 1.01391 1.01227 1.57741 1.14246 1.23524 1.88227 1.19051 0.90782 0.78581 0.97743 1.21467 1.35996 1.06240 0.92864 0.92183 1.24923 0.95086 0.96480 0.97503 1.69914 1.37374 1.15401 1.30910 0.86507 0.78816 0.77592 0.84600 1.20368 1.21173 1.19828 1.02333 0.73747 0.73095 0.72284 1.93772 1.42617 1.84890 1.70252 1.93543 1.65566 1.59037 1.79378 1.59656 1.14325 1.81476 1.29805 1.21988 0.92363 0.99152 0.87152 1.22799 0.94332 1.02877 0.96695 1.22595 0.97638 1.02643 0.92898 1.22282 0.83213 1.00819 0.93810 0.87847 1.22497 0.82021 1.00140 0.77467 1.92959 1.47728 1.97825 1.80018 1.93297 1.95160 1.90899 1.35143 0.93173 0.91147 0.93255 0.94765 0.94806 0.92711 0.91298 0.90620 0.89783 0.90036 0.90184 0.89169 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.84 10.27 59.85 0.61 2.46 16 2 N -0.99 -20.70 3.23 -123.06 -0.40 -21.10 16 3 C 0.26 6.49 5.10 -5.19 -0.03 6.47 16 4 C -0.53 -14.91 9.38 -34.44 -0.32 -15.23 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 S 2.78 55.72 6.08 -107.50 -0.65 55.07 16 13 O -0.93 -22.30 12.97 -57.17 -0.74 -23.04 16 14 O -0.99 -20.71 16.96 -57.17 -0.97 -21.68 16 15 N -1.02 -15.31 3.45 -104.42 -0.36 -15.67 16 16 C 0.12 1.30 7.16 -2.53 -0.02 1.29 16 17 C -0.13 -1.08 7.08 -24.58 -0.17 -1.26 16 18 C -0.12 -1.11 6.12 -24.90 -0.15 -1.26 16 19 C 0.11 1.48 3.23 -66.95 -0.22 1.26 16 20 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 21 C 0.23 3.42 4.79 37.16 0.18 3.60 16 22 F -0.20 -2.90 16.95 2.25 0.04 -2.86 16 23 F -0.16 -3.24 13.29 2.25 0.03 -3.21 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 26 H 0.05 0.70 7.75 -51.93 -0.40 0.30 16 27 H 0.03 0.91 7.75 -51.93 -0.40 0.50 16 28 H 0.03 0.85 7.94 -51.93 -0.41 0.44 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 316.04 15.07 4.76 4.76 Total: -1.00 -34.40 316.04 -7.75 -42.14 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.96 Total: -5.07 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.22 Total: -0.99 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.02 Total: -62.25 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.71 Total: -44.72 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.07 Total: -6.07 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 55.72 SS G_CDS: -0.65 Total: 55.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.40 -7.75 -42.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352513403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.598 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds