Wall clock time and date at job start Tue Mar 31 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46507 * 120.00009 * 2 1 4 4 C 1.50702 * 109.46766 * 274.99937 * 3 2 1 5 5 H 1.08003 * 120.00075 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00191 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99749 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00452 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.46780 * 90.00135 * 8 6 4 10 10 H 1.48497 * 109.47144 * 209.99934 * 8 6 4 11 11 H 1.48496 * 109.47201 * 330.00252 * 8 6 4 12 12 S 1.65596 * 120.00008 * 179.97438 * 2 1 3 13 13 O 1.42108 * 106.40392 * 156.45889 * 12 2 1 14 14 O 1.42099 * 106.40100 * 23.54235 * 12 2 1 15 15 N 1.65595 * 107.22132 * 270.00235 * 12 2 1 16 16 C 1.46494 * 120.00354 * 64.99855 * 15 12 2 17 17 C 1.52999 * 109.47391 * 165.00069 * 16 15 12 18 18 C 1.53786 * 113.61361 * 184.99937 * 17 16 15 19 19 C 1.53781 * 87.17350 * 220.06273 * 18 17 16 20 20 F 1.39895 * 113.61535 * 139.93941 * 19 18 17 21 21 F 1.39898 * 113.61514 * 270.84285 * 19 18 17 22 22 C 1.53782 * 87.08260 * 25.39213 * 19 18 17 23 23 H 1.09001 * 109.46703 * 269.99996 * 1 2 3 24 24 H 1.08994 * 109.47281 * 30.00177 * 1 2 3 25 25 H 1.09002 * 109.46750 * 150.00262 * 1 2 3 26 26 H 1.09001 * 109.47000 * 34.99238 * 3 2 1 27 27 H 1.08994 * 109.47013 * 155.00358 * 3 2 1 28 28 H 0.96999 * 120.00281 * 179.97438 * 7 6 4 29 29 H 0.97007 * 120.00244 * 245.00169 * 15 12 2 30 30 H 1.09002 * 109.47287 * 44.99888 * 16 15 12 31 31 H 1.09004 * 109.47020 * 285.00170 * 16 15 12 32 32 H 1.08993 * 112.90825 * 316.25137 * 17 16 15 33 33 H 1.09002 * 113.61357 * 105.47190 * 18 17 16 34 34 H 1.09002 * 113.61608 * 334.65352 * 18 17 16 35 35 H 1.08997 * 113.61668 * 89.11298 * 22 19 18 36 36 H 1.08998 * 113.61674 * 219.93807 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3415 1.7657 -1.4155 5 1 1.9290 1.1934 -2.2332 6 6 2.9997 2.9508 -1.6665 7 7 3.5016 3.6479 -0.6706 8 14 3.1788 3.5664 -3.4211 9 1 2.0178 4.4264 -3.7647 10 1 4.4317 4.3539 -3.5439 11 1 3.2289 2.4083 -4.3493 12 16 2.2930 -1.4341 0.0006 13 8 3.5760 -1.1570 -0.5440 14 8 1.4114 -2.4067 -0.5434 15 7 2.5381 -1.8580 1.5825 16 6 1.3947 -2.1768 2.4411 17 6 1.8876 -2.8834 3.7055 18 6 0.7523 -3.3713 4.6209 19 6 1.6147 -2.9116 5.8082 20 9 0.8817 -2.2946 6.8276 21 9 2.4851 -3.8981 6.2838 22 6 2.2791 -1.9188 4.8398 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6501 2.0044 0.5893 27 1 3.1858 1.1177 0.4342 28 1 3.9651 4.4815 -0.8472 29 1 3.4388 -1.8952 1.9408 30 1 0.7080 -2.8308 1.9037 31 1 0.8795 -1.2566 2.7166 32 1 2.6405 -3.6443 3.5001 33 1 0.5962 -4.4495 4.5862 34 1 -0.1728 -2.8059 4.5084 35 1 1.7721 -0.9554 4.7862 36 1 3.3555 -1.8233 4.9827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490035743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:55 Heat of formation + Delta-G solvation = -182.223797 kcal Electronic energy + Delta-G solvation = -22738.561085 eV Core-core repulsion = 18827.000113 eV Total energy + Delta-G solvation = -3911.560972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.095 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -49.78494 -48.13968 -39.47447 -38.22341 -37.17599 -36.80947 -35.36106 -34.48001 -29.63627 -28.29878 -27.13927 -26.72590 -24.18361 -23.65225 -21.10790 -20.24129 -18.97162 -18.64407 -18.37298 -17.97710 -17.58914 -17.29288 -17.17417 -16.70024 -16.10202 -15.52752 -15.15313 -15.00393 -14.93078 -14.49633 -14.39335 -14.22434 -14.04859 -13.86194 -13.50536 -13.32418 -13.28765 -13.10869 -13.02523 -12.89700 -12.45885 -12.36485 -12.20511 -12.19099 -11.99179 -11.82447 -11.72149 -11.34195 -10.58864 -10.44215 -9.74987 -8.19407 -6.30832 -0.27630 1.39736 1.42192 1.52509 2.08230 2.41581 2.54681 2.68066 2.87974 3.11920 3.30633 3.35800 3.40401 3.56890 4.06264 4.16395 4.30033 4.43835 4.57633 4.63015 4.68684 4.75772 4.79986 4.86137 4.89365 5.00210 5.12668 5.23481 5.31127 5.49864 5.72194 5.89474 6.11428 6.19770 6.77850 7.38219 8.87878 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.003719 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.912286 B = 7527.142392 C = 7942.219775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.003 6.003 3 C 0.272 3.728 4 C -0.550 4.550 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.924 5.924 8 Si 0.954 3.046 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.275 1.275 12 S 2.799 3.201 13 O -1.014 7.014 14 O -1.009 7.009 15 N -1.119 6.119 16 C 0.124 3.876 17 C -0.106 4.106 18 C -0.145 4.145 19 C 0.239 3.761 20 F -0.203 7.203 21 F -0.193 7.193 22 C -0.163 4.163 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.018 0.982 28 H 0.267 0.733 29 H 0.422 0.578 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.124 0.876 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.998 -12.510 12.748 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C 0.149 3.851 4 C -0.590 4.590 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.564 5.564 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.200 1.200 12 S 2.807 3.193 13 O -0.998 6.998 14 O -0.992 6.992 15 N -0.883 5.883 16 C -0.002 4.002 17 C -0.126 4.126 18 C -0.184 4.184 19 C 0.203 3.797 20 F -0.184 7.184 21 F -0.174 7.174 22 C -0.201 4.201 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.258 0.742 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.837 -12.840 11.987 18.849 hybrid contribution 0.780 0.751 -0.132 1.091 sum -6.056 -12.088 11.854 17.982 Atomic orbital electron populations 1.21624 0.78055 1.03529 1.02736 1.57467 1.15736 1.21870 1.89383 1.18593 0.90512 0.80363 0.95667 1.21873 1.36146 1.06556 0.94409 0.93084 1.25707 0.94848 0.96816 1.01266 1.69997 1.37962 1.15705 1.32693 0.85617 0.78092 0.78296 0.80082 1.19086 1.20463 1.19997 1.01148 0.71995 0.72460 0.73666 1.93578 1.43099 1.85457 1.77637 1.93502 1.67692 1.60114 1.77882 1.55763 1.16046 1.85607 1.30841 1.21448 0.87403 1.00618 0.90687 1.22592 0.99171 0.98431 0.92434 1.24133 0.99216 1.05579 0.89457 1.22440 0.87838 0.86802 0.82614 1.92990 1.77775 1.82970 1.64652 1.92992 1.70658 1.63415 1.90293 1.24351 1.04052 0.99301 0.92371 0.90394 0.91415 0.90625 0.95190 0.96425 0.92411 0.74244 0.89200 0.89798 0.86589 0.87260 0.84806 0.85801 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.59 10.68 127.77 1.36 3.95 16 2 N -1.00 -38.60 3.23 -543.20 -1.75 -40.36 16 3 C 0.27 13.30 5.08 85.63 0.44 13.73 16 4 C -0.55 -30.70 9.38 25.60 0.24 -30.46 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.01 0.74 5.46 84.65 0.46 1.20 16 7 N -0.92 -53.43 13.29 21.44 0.28 -53.14 16 8 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 S 2.80 102.29 6.10 -56.49 -0.34 101.94 16 13 O -1.01 -47.40 17.11 -128.00 -2.19 -49.59 16 14 O -1.01 -38.30 16.21 -128.00 -2.07 -40.38 16 15 N -1.12 -27.46 6.05 -187.50 -1.14 -28.59 16 16 C 0.12 2.14 6.09 86.38 0.53 2.67 16 17 C -0.11 -1.42 3.77 -10.20 -0.04 -1.45 16 18 C -0.15 -1.59 7.42 31.12 0.23 -1.36 16 19 C 0.24 3.84 3.28 31.12 0.10 3.95 16 20 F -0.20 -3.99 17.41 44.97 0.78 -3.21 16 21 F -0.19 -3.77 17.38 44.97 0.78 -2.99 16 22 C -0.16 -2.29 7.43 31.18 0.23 -2.06 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 24 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 25 H 0.08 2.13 7.02 -2.39 -0.02 2.12 16 26 H 0.03 1.48 8.11 -2.39 -0.02 1.46 16 27 H 0.02 0.93 7.61 -2.39 -0.02 0.91 16 28 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.42 9.11 8.65 -96.74 -0.84 8.27 16 30 H 0.09 1.49 7.75 -2.39 -0.02 1.47 16 31 H 0.08 1.25 7.85 -2.38 -0.02 1.23 16 32 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.13 1.04 8.10 -2.39 -0.02 1.02 16 35 H 0.12 1.60 7.90 -2.39 -0.02 1.58 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -72.72 325.97 0.20 -72.52 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.26 Total: 7.40 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 3.55 Total: -9.85 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -2.60 Total: -122.09 kcal Atomic # 8 Polarization: -85.70 SS G_CDS: -4.27 Total: -89.96 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 1.56 Total: -6.20 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 102.29 SS G_CDS: -0.34 Total: 101.94 kcal Total: -72.72 0.20 -72.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490035743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.701 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds