Wall clock time and date at job start Tue Mar 31 2020 03:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47596 * 333.08686 * 3 2 1 5 5 C 1.33877 * 122.76271 * 90.02163 * 4 3 2 6 6 O 1.21223 * 125.40081 * 359.97438 * 5 4 3 7 7 C 1.51320 * 109.20567 * 180.24721 * 5 4 3 8 8 C 1.54226 * 103.55401 * 359.63406 * 7 5 4 9 9 H 1.09009 * 110.93847 * 241.66865 * 8 7 5 10 10 N 1.46496 * 110.40997 * 118.76827 * 8 7 5 11 11 C 1.39689 * 120.00095 * 159.52184 * 10 8 7 12 12 C 1.39330 * 119.95114 * 359.72809 * 11 10 8 13 13 C 1.38484 * 120.42398 * 179.76004 * 12 11 10 14 14 C 1.37688 * 120.32569 * 0.51511 * 13 12 11 15 15 C 1.40750 * 119.89112 * 359.74268 * 14 13 12 16 16 C 1.41406 * 120.21055 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99612 * 24.44612 * 16 15 14 18 18 C 1.39932 * 120.00359 * 204.45064 * 16 15 14 19 19 N 1.30827 * 119.99822 * 17.86986 * 18 16 15 20 20 Si 1.86794 * 120.00100 * 197.86546 * 18 16 15 21 21 H 1.48503 * 109.47287 * 60.00033 * 20 18 16 22 22 H 1.48497 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47308 * 300.00200 * 20 18 16 24 24 C 1.38281 * 119.95002 * 180.02562 * 11 10 8 25 25 C 1.33880 * 122.76068 * 270.02983 * 4 3 2 26 26 O 1.21221 * 125.39699 * 359.96889 * 25 4 3 27 27 H 4.40643 * 5.51325 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.46925 * 213.08589 * 3 2 1 29 29 H 1.09003 * 109.46710 * 93.08970 * 3 2 1 30 30 H 1.09000 * 110.60363 * 118.27410 * 7 5 4 31 31 H 1.09005 * 110.60486 * 241.23899 * 7 5 4 32 32 H 0.97000 * 120.00386 * 339.52597 * 10 8 7 33 33 H 1.07999 * 119.79114 * 359.97438 * 12 11 10 34 34 H 1.07996 * 119.84080 * 180.25572 * 13 12 11 35 35 H 1.07992 * 120.05600 * 179.71799 * 14 13 12 36 36 H 0.97000 * 120.00071 * 180.02562 * 19 18 16 37 37 H 1.07999 * 120.16558 * 359.95790 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2306 0.6251 5 6 3.3774 -2.3490 -0.0696 6 8 3.2272 -2.4794 -1.2654 7 6 3.8624 -3.4268 0.8754 8 6 3.8672 -2.7271 2.2497 9 1 4.8736 -2.6956 2.6674 10 7 2.9496 -3.4029 3.1703 11 6 3.0943 -3.2349 4.5495 12 6 4.1153 -2.4289 5.0487 13 6 4.2648 -2.2515 6.4140 14 6 3.4117 -2.8789 7.2940 15 6 2.3789 -3.7005 6.8046 16 6 1.4993 -4.3484 7.7023 17 1 1.3406 -3.9424 8.6905 18 6 0.8345 -5.5158 7.3106 19 7 1.2666 -6.2013 6.2835 20 14 -0.6699 -6.0953 8.2541 21 1 -1.7216 -5.0483 8.2004 22 1 -1.1852 -7.3470 7.6436 23 1 -0.2985 -6.3516 9.6689 24 6 2.2279 -3.8737 5.4174 25 6 3.3760 -1.3301 1.9383 26 8 3.2252 -0.4418 2.7492 27 1 -1.0498 -0.0002 0.0003 28 1 3.0089 0.8619 0.5610 29 1 3.0093 0.0562 -1.0262 30 1 3.1760 -4.2735 0.8762 31 1 4.8690 -3.7478 0.6069 32 1 2.2415 -3.9671 2.8222 33 1 4.7924 -1.9364 4.3665 34 1 5.0569 -1.6214 6.7905 35 1 3.5350 -2.7412 8.3580 36 1 0.8056 -7.0102 6.0116 37 1 1.4387 -4.5021 5.0318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491754521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:00 Heat of formation + Delta-G solvation = 25.782396 kcal Electronic energy + Delta-G solvation = -23093.781870 eV Core-core repulsion = 19610.026302 eV Total energy + Delta-G solvation = -3483.755568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.99883 -38.69459 -37.77914 -36.00771 -35.61534 -33.84276 -33.12458 -31.34658 -29.47670 -27.98139 -27.05612 -25.52172 -25.04689 -22.41085 -20.95524 -20.55341 -19.80369 -18.55477 -17.56104 -17.25451 -16.78361 -16.49968 -15.83285 -15.10944 -14.96805 -14.81079 -14.53125 -14.25467 -14.08498 -13.69764 -13.61092 -13.14940 -12.83301 -12.40983 -12.18828 -12.17139 -11.65256 -11.40975 -11.12101 -11.06579 -10.71886 -10.52866 -10.45503 -10.41959 -10.17164 -10.07891 -9.69025 -9.50537 -9.29463 -8.86903 -7.33506 -6.77413 -6.35447 -4.33234 1.45708 1.95807 2.60201 2.62645 2.86113 2.99884 3.07716 3.11415 3.18701 3.31012 3.80201 3.96088 4.08309 4.15127 4.26880 4.33243 4.70804 4.92041 4.99021 5.07515 5.36374 5.43805 5.50710 5.68842 5.80380 6.22522 6.54232 6.66862 6.79397 7.00116 7.10660 7.21237 7.27361 7.34088 7.37079 7.67162 7.73704 7.88584 8.03499 8.12345 8.41395 8.45907 8.75072 8.97407 9.05268 10.22767 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.003956 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.632799 B = 7075.964939 C = 7465.487353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.216 4.216 3 C 0.211 3.789 4 N -0.574 5.574 5 C 0.533 3.467 6 O -0.487 6.487 7 C -0.163 4.163 8 C 0.138 3.862 9 H 0.128 0.872 10 N -0.735 5.735 11 C 0.204 3.796 12 C -0.280 4.280 13 C -0.066 4.066 14 C -0.251 4.251 15 C 0.137 3.863 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.079 3.921 19 N -0.794 5.794 20 Si 0.904 3.096 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.220 4.220 25 C 0.503 3.497 26 O -0.450 6.450 27 H 0.221 0.779 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.397 0.603 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.278 0.722 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 5.084 -12.323 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.217 4.217 3 C 0.091 3.909 4 N -0.319 5.319 5 C 0.322 3.678 6 O -0.359 6.359 7 C -0.203 4.203 8 C 0.026 3.974 9 H 0.146 0.854 10 N -0.371 5.371 11 C 0.108 3.892 12 C -0.302 4.302 13 C -0.085 4.085 14 C -0.271 4.271 15 C 0.134 3.866 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.420 5.420 20 Si 0.729 3.271 21 H -0.189 1.189 22 H -0.205 1.205 23 H -0.190 1.190 24 C -0.244 4.244 25 C 0.288 3.712 26 O -0.316 6.316 27 H 0.238 0.762 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.233 0.767 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.579 5.407 -12.641 13.989 hybrid contribution -1.263 -0.412 0.203 1.344 sum 1.316 4.995 -12.438 13.468 Atomic orbital electron populations 1.25011 0.95967 0.97678 0.99677 1.23090 0.94576 1.02574 1.01489 1.18455 0.84616 0.87230 1.00637 1.47045 1.59736 1.13870 1.11249 1.20819 0.75111 0.83751 0.88079 1.90761 1.49599 1.81760 1.13765 1.22842 1.06428 0.98532 0.92546 1.21306 0.97917 0.87719 0.90427 0.85438 1.44222 1.35804 1.54164 1.02946 1.17584 0.95298 0.95439 0.80889 1.19845 1.04382 1.11159 0.94843 1.20284 0.97574 0.97729 0.92947 1.20898 1.00473 1.08612 0.97165 1.17301 0.89215 0.88556 0.91533 1.19528 1.22034 1.07253 1.00621 0.90552 1.25858 0.97303 0.95893 0.94797 1.69839 1.35731 1.12852 1.23531 0.86439 0.81901 0.78273 0.80504 1.18929 1.20454 1.19044 1.20715 1.03073 1.07980 0.92610 1.22283 0.76227 0.92302 0.80390 1.90788 1.46600 1.44508 1.49702 0.76179 0.86662 0.86782 0.85522 0.85235 0.76725 0.89569 0.89463 0.89267 0.91113 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 19.25 29.55 0.57 -1.38 16 2 C -0.22 -2.81 13.68 -37.12 -0.51 -3.32 16 3 C 0.21 2.40 6.03 -6.83 -0.04 2.36 16 4 N -0.57 -7.25 2.51 -118.47 -0.30 -7.55 16 5 C 0.53 6.39 8.08 -11.08 -0.09 6.30 16 6 O -0.49 -6.93 17.48 5.61 0.10 -6.83 16 7 C -0.16 -1.59 6.78 -26.94 -0.18 -1.77 16 8 C 0.14 1.84 3.03 -68.14 -0.21 1.64 16 9 H 0.13 1.62 6.61 -51.92 -0.34 1.28 16 10 N -0.74 -12.56 5.32 -52.42 -0.28 -12.84 16 11 C 0.20 4.51 6.64 -83.86 -0.56 3.95 16 12 C -0.28 -6.15 8.96 -39.08 -0.35 -6.50 16 13 C -0.07 -1.51 10.02 -39.69 -0.40 -1.91 16 14 C -0.25 -6.25 9.79 -38.83 -0.38 -6.63 16 15 C 0.14 3.65 5.57 -106.85 -0.60 3.06 16 16 C -0.46 -12.35 9.05 -37.74 -0.34 -12.69 16 17 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 18 C 0.08 1.97 5.14 -17.35 -0.09 1.88 16 19 N -0.79 -20.09 10.95 55.55 0.61 -19.48 16 20 Si 0.90 18.63 29.59 -169.99 -5.03 13.60 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.22 -5.57 8.53 -38.67 -0.33 -5.90 16 25 C 0.50 7.50 7.72 -11.08 -0.09 7.41 16 26 O -0.45 -8.42 17.14 5.61 0.10 -8.32 16 27 H 0.22 1.80 7.80 -54.10 -0.42 1.38 16 28 H 0.12 1.19 7.83 -51.93 -0.41 0.78 16 29 H 0.11 1.07 7.83 -51.93 -0.41 0.66 16 30 H 0.13 1.14 7.65 -51.93 -0.40 0.74 16 31 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 6.30 8.30 -40.82 -0.34 5.97 16 33 H 0.09 1.70 6.19 -52.49 -0.32 1.38 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 36 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 37 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -32.01 331.41 -7.18 -39.19 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -3.78 Total: 10.76 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -3.59 Total: -13.51 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.03 Total: -39.88 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.19 Total: -15.15 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.01 -7.18 -39.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491754521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.973 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds