Wall clock time and date at job start Tue Mar 31 2020 03:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46937 * 2 1 4 4 C 1.46505 * 120.00128 * 266.44896 * 3 2 1 5 5 C 1.50698 * 109.46803 * 276.72968 * 4 3 2 6 6 H 1.08000 * 120.00286 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99942 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00360 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99871 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46643 * 90.00284 * 9 7 5 11 11 H 1.48495 * 109.47471 * 210.00299 * 9 7 5 12 12 H 1.48503 * 109.47133 * 330.00794 * 9 7 5 13 13 C 1.34773 * 119.99760 * 86.44833 * 3 2 1 14 14 O 1.21282 * 120.00398 * 5.46509 * 13 3 2 15 15 C 1.50708 * 119.99872 * 185.45887 * 13 3 2 16 16 C 1.53655 * 112.54065 * 292.70636 * 15 13 3 17 17 C 1.54896 * 100.67584 * 268.75965 * 16 15 13 18 18 C 1.51192 * 104.24090 * 333.64191 * 17 16 15 19 19 O 1.21277 * 124.71813 * 191.25065 * 18 17 16 20 20 N 1.35820 * 110.55605 * 11.21261 * 18 17 16 21 21 C 1.46844 * 138.49577 * 194.82574 * 20 18 17 22 22 C 1.54428 * 113.56107 * 164.33735 * 21 20 18 23 23 S 1.83554 * 112.61529 * 58.31060 * 15 13 3 24 24 H 1.09008 * 109.47031 * 184.91600 * 1 2 3 25 25 H 1.08997 * 109.47058 * 304.91553 * 1 2 3 26 26 H 1.08997 * 109.47290 * 64.91342 * 1 2 3 27 27 H 1.09005 * 109.46898 * 240.00031 * 2 1 3 28 28 H 1.08999 * 109.47216 * 120.00589 * 2 1 3 29 29 H 1.08998 * 109.47070 * 36.72557 * 4 3 2 30 30 H 1.09001 * 109.47006 * 156.73199 * 4 3 2 31 31 H 0.96999 * 120.00209 * 179.97438 * 8 7 5 32 32 H 1.08996 * 111.18852 * 26.62575 * 16 15 13 33 33 H 1.08998 * 111.18287 * 150.89488 * 16 15 13 34 34 H 1.09003 * 110.47357 * 92.31038 * 17 16 15 35 35 H 1.08998 * 110.47215 * 214.91411 * 17 16 15 36 36 H 1.08996 * 108.67495 * 43.26184 * 21 20 18 37 37 H 1.08997 * 108.67536 * 285.40880 * 21 20 18 38 38 H 1.09003 * 110.98677 * 224.41965 * 22 21 20 39 39 H 1.08997 * 110.98755 * 100.61562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3366 2.0457 -1.2663 5 6 3.7303 1.6664 -1.6961 6 1 4.3201 0.9977 -1.0868 7 6 4.2528 2.1740 -2.8668 8 7 5.4692 1.8435 -3.2417 9 14 3.2328 3.3312 -3.9204 10 1 3.4773 4.7328 -3.4950 11 1 3.6178 3.1721 -5.3457 12 1 1.7924 3.0087 -3.7577 13 6 2.1747 2.0406 1.1650 14 8 2.0069 1.4611 2.2171 15 6 2.5583 3.4980 1.1602 16 6 3.9813 3.7309 0.6292 17 6 4.7933 3.6666 1.9467 18 6 3.8047 4.0799 3.0134 19 8 4.0967 4.3449 4.1603 20 7 2.5445 4.1140 2.5083 21 6 1.2262 4.6461 2.8762 22 6 0.2277 4.6898 1.6989 23 16 1.3553 4.5416 0.2476 24 1 -0.3633 -1.0240 0.0881 25 1 -0.3633 0.5882 0.8427 26 1 -0.3634 0.4357 -0.9307 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6235 1.7339 -2.0295 30 1 2.2784 3.1261 -1.1343 31 1 5.8366 2.2002 -4.0655 32 1 4.2804 2.9384 -0.0567 33 1 4.0708 4.7100 0.1588 34 1 5.1468 2.6515 2.1276 35 1 5.6314 4.3627 1.9123 36 1 1.3535 5.6569 3.2635 37 1 0.8068 4.0237 3.6666 38 1 -0.3115 5.6369 1.6793 39 1 -0.4647 3.8491 1.7428 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535724607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:02 Heat of formation + Delta-G solvation = -40.885988 kcal Electronic energy + Delta-G solvation = -23876.675061 eV Core-core repulsion = 20525.472487 eV Total energy + Delta-G solvation = -3351.202575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72954 -38.79959 -36.45690 -35.53549 -33.87025 -32.82471 -30.99537 -29.45648 -28.08428 -27.47192 -24.09227 -23.24841 -22.74837 -21.68170 -19.89827 -18.59302 -17.58151 -17.18245 -16.68084 -16.04411 -15.64545 -15.31667 -15.04125 -14.40938 -14.38841 -13.89879 -13.74976 -13.48928 -13.37198 -13.09187 -12.78225 -12.59529 -12.44746 -12.19459 -11.88133 -11.80042 -11.62822 -11.24792 -11.05180 -10.93801 -10.75480 -10.55605 -10.38310 -10.32811 -9.79706 -9.71664 -9.60943 -8.84524 -8.56873 -7.94408 -7.68939 -6.35651 -4.37520 1.47562 1.93937 2.61757 2.75090 3.12341 3.15779 3.20965 3.24212 3.58231 4.16844 4.17788 4.54716 4.71914 4.77947 4.84534 4.95173 5.17575 5.29070 5.45181 5.46397 5.51450 5.61927 5.64791 5.72952 5.88778 6.12181 6.13190 6.22416 6.24539 6.38271 6.47565 6.66188 6.67640 7.11948 7.17687 7.31067 7.88456 8.19344 8.24337 8.56797 8.69569 9.22825 10.75239 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.007615 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.751040 B = 3676.142486 C = 4086.106958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.573 5.573 4 C 0.202 3.798 5 C -0.549 4.549 6 H 0.083 0.917 7 C 0.084 3.916 8 N -0.881 5.881 9 Si 0.861 3.139 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.260 1.260 13 C 0.529 3.471 14 O -0.546 6.546 15 C 0.160 3.840 16 C -0.130 4.130 17 C -0.141 4.141 18 C 0.552 3.448 19 O -0.527 6.527 20 N -0.606 5.606 21 C 0.127 3.873 22 C -0.097 4.097 23 S -0.219 6.219 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.269 0.731 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 4.181 4.491 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.303 5.303 4 C 0.080 3.920 5 C -0.587 4.587 6 H 0.101 0.899 7 C -0.121 4.121 8 N -0.517 5.517 9 Si 0.686 3.314 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.184 1.184 13 C 0.311 3.689 14 O -0.426 6.426 15 C -0.040 4.040 16 C -0.168 4.168 17 C -0.182 4.182 18 C 0.341 3.659 19 O -0.402 6.402 20 N -0.344 5.344 21 C 0.005 3.995 22 C -0.245 4.245 23 S 0.010 5.990 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.171 0.829 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.138 0.862 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.724 4.588 4.494 10.834 hybrid contribution -0.583 0.234 0.246 0.675 sum -9.307 4.822 4.740 11.504 Atomic orbital electron populations 1.22115 0.96629 1.01520 1.01874 1.21335 0.93361 0.82690 1.03330 1.47749 1.62334 1.13427 1.06758 1.20155 0.97356 0.93429 0.81045 1.21302 0.98002 1.31127 1.08234 0.89890 1.24826 0.94663 0.95760 0.96867 1.69874 1.14920 1.43346 1.23555 0.87050 0.81667 0.82174 0.80472 1.19312 1.20750 1.18439 1.19761 0.77955 0.86859 0.84375 1.90658 1.52602 1.68154 1.31172 1.24142 1.00645 0.93238 0.85987 1.23241 0.87487 1.08025 0.98097 1.22433 0.97940 1.05148 0.92712 1.21204 0.81268 0.75049 0.88332 1.90673 1.80746 1.50077 1.18718 1.49505 1.08699 1.57573 1.18604 1.21430 0.81308 1.00186 0.96592 1.24715 0.99350 1.06875 0.93542 1.88551 1.25895 1.65138 1.19398 0.92054 0.92983 0.92500 0.89450 0.90802 0.94483 0.93922 0.92083 0.82898 0.88479 0.87145 0.86916 0.90010 0.90506 0.86178 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.22 37.16 0.38 -1.94 16 2 C 0.12 1.96 6.15 -4.04 -0.02 1.93 16 3 N -0.57 -10.98 2.47 -175.05 -0.43 -11.42 16 4 C 0.20 4.14 3.50 -5.19 -0.02 4.12 16 5 C -0.55 -13.03 7.31 -34.44 -0.25 -13.28 16 6 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 7 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.88 -23.61 13.96 55.43 0.77 -22.84 16 9 Si 0.86 18.70 27.47 -169.99 -4.67 14.03 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 13 C 0.53 10.34 6.71 -10.98 -0.07 10.26 16 14 O -0.55 -11.82 16.28 5.56 0.09 -11.72 16 15 C 0.16 2.84 0.31 -67.80 -0.02 2.82 16 16 C -0.13 -2.28 5.46 -25.39 -0.14 -2.42 16 17 C -0.14 -2.28 6.81 -26.64 -0.18 -2.46 16 18 C 0.55 10.13 8.38 -10.27 -0.09 10.04 16 19 O -0.53 -10.97 18.03 5.56 0.10 -10.87 16 20 N -0.61 -10.40 2.96 -159.72 -0.47 -10.88 16 21 C 0.13 1.75 7.25 -3.11 -0.02 1.73 16 22 C -0.10 -1.16 7.56 37.91 0.29 -0.87 16 23 S -0.22 -3.49 19.53 -107.50 -2.10 -5.59 16 24 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 1.46 8.05 -51.93 -0.42 1.04 16 28 H 0.07 1.28 7.46 -51.93 -0.39 0.89 16 29 H 0.04 0.77 7.18 -51.93 -0.37 0.40 16 30 H 0.04 0.87 3.16 -35.11 -0.11 0.76 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.15 3.09 4.42 -51.93 -0.23 2.86 16 33 H 0.10 1.60 7.87 -51.93 -0.41 1.19 16 34 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -29.82 324.34 -7.39 -37.21 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.32 Total: 5.25 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -0.25 Total: 11.93 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.13 Total: -45.13 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.19 Total: -22.59 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.67 Total: 14.03 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.10 Total: -5.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.82 -7.39 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535724607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.675 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds